/var/www/html/rsat/public_html/tmp/www-data/2025/11/25/matrix-clustering_2025-11-25.130443_cQHnvU/matrix-clustering_tables/alignment_table.tab


id name cluster strand offset_up offset_down width aligned_consensus aligned_consensus_rc
oct4_peak_motifs_m16_local_words_8nt_m1 local_words_8nt_m1 cluster_1 D 2 4 24 ++sywTTgTTATGCAAATdw++++ ++++WHATTTGCATAACAAWRS++
oct4_peak_motifs_m17_local_words_8nt_m2 local_words_8nt_m2 cluster_1 R 2 4 24 ++SYWTTGTTATGCAAATDW++++ ++++whATTTGCATAAcAAwrs++
oct4_peak_motifs_m5_local_words_7nt_m1 local_words_7nt_m1 cluster_1 D 2 4 24 ++sywTTgTtATGCAAAtdw++++ ++++WHATTTGCATAACAAWRS++
oct4_peak_motifs_m6_local_words_7nt_m2 local_words_7nt_m2 cluster_1 R 2 4 24 ++SYWTTGTTATGCAAATDW++++ ++++whaTTTGCATaAcAAwrs++
oct4_peak_motifs_m10_positions_7nt_m2 positions_7nt_m2 cluster_1 R 2 4 24 ++SYWTTGTTATGCAAATDW++++ ++++whaTTTGCATaAcAAwrs++
oct4_meme-chip_m21_MEME_ChIP_21 MEME_ChIP_21 cluster_1 D 9 6 24 +++++++++TATGcwAAT++++++ ++++++ATTWGCATA+++++++++
oct4_meme-chip_m24_MEME_ChIP_24 MEME_ChIP_24 cluster_1 D 9 6 24 +++++++++TATGywAAT++++++ ++++++ATTWRCATA+++++++++
oct4_meme-chip_m13_MEME_ChIP_13 MEME_ChIP_13 cluster_1 D 6 2 24 ++++++twkTATGCWAATkmrm++ ++KYKMATTWGCATAMWA++++++
oct4_meme-chip_m14_MEME_ChIP_14 MEME_ChIP_14 cluster_1 D 6 2 24 ++++++ywdTATGCWAATkarm++ ++KYTMATTWGCATAHWR++++++
oct4_meme-chip_m16_MEME_ChIP_16 MEME_ChIP_16 cluster_1 D 8 4 24 ++++++++wTATGywAATkw++++ ++++WMATTWRCATAW++++++++
oct4_meme-chip_m18_MEME_ChIP_18 MEME_ChIP_18 cluster_1 D 8 4 24 ++++++++wTATGcwAATkw++++ ++++WMATTWGCATAW++++++++
oct4_meme-chip_m20_MEME_ChIP_20 MEME_ChIP_20 cluster_1 D 9 6 24 +++++++++TATGCwAAT++++++ ++++++ATTWGCATA+++++++++
oct4_meme-chip_m15_MEME_ChIP_15 MEME_ChIP_15 cluster_1 D 9 6 24 +++++++++TATGCAAAT++++++ ++++++ATTTGCATA+++++++++
oct4_meme-chip_m10_MEME_ChIP_10 MEME_ChIP_10 cluster_1 D 3 6 24 +++ywTTswyATGCAaAt++++++ ++++++ATTTGCATRWSAAWR+++
oct4_meme-chip_m25_MEME_ChIP_25 MEME_ChIP_25 cluster_1 R 3 6 24 +++YWTTSWTATGCWAAT++++++ ++++++aTtwGCATawsAAwr+++
oct4_peak_motifs_m19_positions_8nt_m1 positions_8nt_m1 cluster_1 D 2 3 24 ++syaTTgTtATGCAAATgwm+++ +++KWCATTTGCATAACAATRS++
oct4_homer_m1_homer_1 homer_1 cluster_1 D 3 7 24 +++ywTTswtATGcAaA+++++++ +++++++TTTGCATAWSAAWR+++
oct4_peak_motifs_m1_oligos_7nt_mkv5_m1 oligos_7nt_mkv5_m1 cluster_1 D 8 4 24 ++++++++wwATGCAAATgw++++ ++++WCATTTGCATWW++++++++
oct4_peak_motifs_m12_oligos_8nt_mkv6_m1 oligos_8nt_mkv6_m1 cluster_1 R 5 7 24 +++++SSCGCCTGCGCS+++++++ +++++++sgCGCAGGCGss+++++
oct4_peak_motifs_m13_oligos_8nt_mkv6_m2 oligos_8nt_mkv6_m2 cluster_1 R 5 7 24 +++++YGCGCATGCGCR+++++++ +++++++ygCGCatGCGcr+++++
oct4_meme-chip_m11_MEME_ChIP_11 MEME_ChIP_11 cluster_1 D 8 5 24 ++++++++wTATGcwAATt+++++ +++++AATTWGCATAW++++++++
oct4_meme-chip_m12_MEME_ChIP_12 MEME_ChIP_12 cluster_1 D 7 5 24 +++++++awTATGCwAATk+++++ +++++MATTWGCATAWT+++++++
oct4_meme-chip_m17_MEME_ChIP_17 MEME_ChIP_17 cluster_1 D 7 4 24 +++++++wwTATGCwAATtw++++ ++++WAATTWGCATAWW+++++++
oct4_meme-chip_m19_MEME_ChIP_19 MEME_ChIP_19 cluster_1 D 7 3 24 +++++++awTATGCwAATkAg+++ +++CTMATTWGCATAWT+++++++
oct4_homer_m16_homer_16 homer_16 cluster_1 R 8 6 24 ++++++++YTKKKTTTTK++++++ ++++++mAaAammmAr++++++++
oct4_homer_m18_homer_18 homer_18 cluster_1 R 8 6 24 ++++++++TTTTTTTTTT++++++ ++++++AAAAAAAAAA++++++++
oct4_meme-chip_m23_MEME_ChIP_23 MEME_ChIP_23 cluster_1 R 8 3 24 ++++++++WYATGCAAATKMR+++ +++ykmATTTGCATrw++++++++
oct4_peak_motifs_m11_positions_7nt_m4 positions_7nt_m4 cluster_1 R 7 3 24 +++++++YATATGCGCATATR+++ +++yaTATGCGCATAtr+++++++
oct4_peak_motifs_m21_positions_8nt_m3 positions_8nt_m3 cluster_1 D 6 2 24 ++++++gcaTATGCGCATAtgc++ ++GCATATGCGCATATGC++++++
oct4_peak_motifs_m2_oligos_7nt_mkv5_m2 oligos_7nt_mkv5_m2 cluster_1 D 8 5 24 ++++++++wwATGCTAAtt+++++ +++++AATTAGCATWW++++++++
oct4_peak_motifs_m18_local_words_8nt_m3 local_words_8nt_m3 cluster_1 R 8 4 24 ++++++++WYATGCATATKH++++ ++++dmATATGCATrw++++++++
oct4_homer_m9_homer_9 homer_9 cluster_1 D 6 4 24 ++++++ksrTATGCGCATwt++++ ++++AWATGCGCATAYSM++++++
oct4_peak_motifs_m7_local_words_7nt_m3 local_words_7nt_m3 cluster_1 D 6 4 24 ++++++wsATATGCAAATgw++++ ++++WCATTTGCATATSW++++++
oct4_homer_m4_homer_4 homer_4 cluster_1 D 5 5 24 +++++yGCGCAtGCGCrsk+++++ +++++MSYGCGCATGCGCR+++++
oct4_meme-chip_m1_MEME_ChIP_1 MEME_ChIP_1 cluster_1 D 10 7 24 ++++++++++ATGYwAA+++++++ +++++++TTWRCAT++++++++++
oct4_meme-chip_m5_MEME_ChIP_5 MEME_ChIP_5 cluster_1 R 9 7 24 +++++++++YMTGCGCA+++++++ +++++++TGCGCAkr+++++++++
oct4_homer_m19_homer_19 homer_19 cluster_1 D 7 7 24 +++++++CGCATGCGCA+++++++ +++++++TGCGCATGCG+++++++
oct4_peak_motifs_m9_positions_7nt_m1 positions_7nt_m1 cluster_1 D 0 4 24 wyaTtTgCATATGcAaAtrw++++ ++++WYATTTGCATATGCAAATRW
oct4_peak_motifs_m20_positions_8nt_m2 positions_8nt_m2 cluster_1 R 1 5 24 +YAYATGCATATGCATRTR+++++ +++++yayATGCATATGCATrtr+
oct4_peak_motifs_m4_oligos_7nt_mkv5_m4 oligos_7nt_mkv5_m4 cluster_1 R 2 10 24 ++YYATTGTTATKY++++++++++ ++++++++++rmATAACAATrr++
oct4_peak_motifs_m22_positions_8nt_m4 positions_8nt_m4 cluster_1 R 3 9 24 +++YWTTGTCATGYW+++++++++ +++++++++wrCATGACAAwr+++
oct4_peak_motifs_m15_oligos_8nt_mkv6_m4 oligos_8nt_mkv6_m4 cluster_1 R 5 7 24 +++++SSCGGCTGCGSS+++++++ +++++++ssCGCAGCCGss+++++
oct4_homer_m13_homer_13 homer_13 cluster_1 R 10 4 24 ++++++++++WTGCWAATKM++++ ++++kmATtWGCAW++++++++++
oct4_meme-chip_m2_MEME_ChIP_2 MEME_ChIP_2 cluster_1 D 5 11 24 +++++CCMCdCCC+++++++++++ +++++++++++GGGHGKGG+++++
oct4_meme-chip_m9_MEME_ChIP_9 MEME_ChIP_9 cluster_1 D 5 8 24 +++++CCCCwCCyCCm++++++++ ++++++++KGGRGGWGGGG+++++
oct4_peak_motifs_m14_oligos_8nt_mkv6_m3 oligos_8nt_mkv6_m3 cluster_1 D 5 7 24 +++++ssCGCTTCCGss+++++++ +++++++SSCGGAAGCGSS+++++
oct4_peak_motifs_m8_local_words_7nt_m4 local_words_7nt_m4 cluster_1 R 2 0 24 ++KYATTGTTATGCATAACAATRM kyaTTgTTaTGCAtAAcAAtrm++
oct4_meme-chip_m8_MEME_ChIP_8 MEME_ChIP_8 cluster_1 D 7 9 24 +++++++GGMGGMGG+++++++++ +++++++++CCkCCkCC+++++++
oct4_meme-chip_m3_MEME_ChIP_3 MEME_ChIP_3 cluster_1 R 4 12 24 ++++WTTGTYAT++++++++++++ ++++++++++++ATrACAAw++++
oct4_homer_m3_homer_3 homer_3 cluster_1 D 3 7 24 +++sCtsCTGCTgCybs+++++++ +++++++SVRGCAGCAGSAGS+++
oct4_homer_m15_homer_15 homer_15 cluster_1 R 3 11 24 +++SCWGCWGCWG+++++++++++ +++++++++++CwGCwGCwGs+++
oct4_meme-chip_m4_MEME_ChIP_4 MEME_ChIP_4 cluster_1 R 3 15 24 +++YTTCCY+++++++++++++++ +++++++++++++++rGGAAr+++
oct4_meme-chip_m7_MEME_ChIP_7 MEME_ChIP_7 cluster_1 R 4 14 24 ++++TYCCWG++++++++++++++ ++++++++++++++CwGGrA++++
oct4_homer_m2_homer_2 homer_2 cluster_1 R 4 6 24 ++++YYCMAGSCCWGCCT++++++ ++++++aGgCwGGsCTkGrr++++
oct4_homer_m11_homer_11 homer_11 cluster_1 D 5 9 24 +++++cyCwGcyyws+++++++++ +++++++++SWRRGCWGRG+++++
oct4_homer_m12_homer_12 homer_12 cluster_1 R 5 9 24 +++++YYYYYYYYYY+++++++++ +++++++++rRrrrrrrrR+++++
oct4_homer_m6_homer_6 homer_6 cluster_1 D 4 6 24 ++++TTTGTTtTGtTtTG++++++ ++++++CAAAACAAAACAAA++++
oct4_homer_m10_homer_10 homer_10 cluster_1 R 7 7 24 +++++++CWRASMMWGS+++++++ +++++++sCWkkstyWg+++++++
oct4_homer_m17_homer_17 homer_17 cluster_1 R 7 7 24 +++++++CACACACACA+++++++ +++++++TGTGTGTGTG+++++++
oct4_homer_m14_homer_14 homer_14 cluster_1 D 3 11 24 +++ytyyCwgsar+++++++++++ +++++++++++YTSCWGRRAR+++
oct4_homer_m5_homer_5 homer_5 cluster_1 R 1 9 24 +SMSGCYCCGCCCCY+++++++++ +++++++++rGGGGCGGRGCsks+
oct4_homer_m8_homer_8 homer_8 cluster_1 R 1 9 24 +ARGRCCACACCYMM+++++++++ +++++++++kkrGgTGTGgycyt+
oct4_homer_m7_homer_7 homer_7 cluster_1 D 4 6 24 ++++TGTGGGTGCTGGGM++++++ ++++++kCCCAgCaCCCACa++++
oct4_peak_motifs_m3_oligos_7nt_mkv5_m3 oligos_7nt_mkv5_m3 cluster_1 D 5 8 24 +++++SSGAGGGCGSS++++++++ ++++++++ssCGCCCTCss+++++
oct4_meme-chip_m22_MEME_ChIP_22 MEME_ChIP_22 cluster_1 D 2 2 24 ++mKkTTkyTkTkTttwkwwkG++ ++CMWWMWAAAMAMARMAAMMK++
oct4_meme-chip_m6_MEME_ChIP_6 MEME_ChIP_6 cluster_1 D 7 9 24 +++++++TGACCTTG+++++++++ +++++++++CAAGGTCA+++++++