compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Program version 1.118 Quick mode Input files file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file1 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1.tf Output files alignments_1ton $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab match_table_txt $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab prefix $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant match_table_html $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html html_index $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html alignments_1ton_html $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1.tf file1 1 11 11464 file2 879 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file2 1 6 20 file2 2 14 43 file2 3 10 25 file2 4 15 10 file2 5 10 17 file2 6 10 18 file2 7 17 25 file2 8 15 33 file2 9 14 16 file2 10 6 16 file2 11 15 1369 ... 869 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6nt_mkv4_m1 | MA0052.5 | oligos_6nt_mkv4_m1 | MEF2A | 0.710 | 0.645 | 11 | 10 | 10 | 11 | 0.9091 | 0.9091 | 1.0000 | R | 0 |
| oligos_6nt_mkv4_m1 | MA1525.3 | oligos_6nt_mkv4_m1 | NFATC4 | 0.741 | 0.607 | 11 | 9 | 9 | 11 | 0.8182 | 0.8182 | 1.0000 | R | 2 |
| oligos_6nt_mkv4_m1 | MA0606.3 | oligos_6nt_mkv4_m1 | Nfat5 | 0.832 | 0.605 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | R | 3 |
| oligos_6nt_mkv4_m1 | MA0041.3 | oligos_6nt_mkv4_m1 | FOXD3 | 0.744 | 0.585 | 11 | 14 | 11 | 14 | 0.7857 | 1.0000 | 0.7857 | R | -3 |
| oligos_6nt_mkv4_m1 | MA2124.1 | oligos_6nt_mkv4_m1 | Hmga1 | 0.797 | 0.579 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | D | 2 |
| oligos_6nt_mkv4_m1 | MA0627.3 | oligos_6nt_mkv4_m1 | POU2F3 | 0.700 | 0.573 | 11 | 9 | 9 | 11 | 0.8182 | 0.8182 | 1.0000 | R | 2 |
| oligos_6nt_mkv4_m1 | MA0050.4 | oligos_6nt_mkv4_m1 | Irf1 | 0.750 | 0.519 | 11 | 11 | 9 | 13 | 0.6923 | 0.8182 | 0.8182 | R | -2 |
| oligos_6nt_mkv4_m1 | MA0152.3 | oligos_6nt_mkv4_m1 | Nfatc2 | 0.707 | 0.515 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | R | 3 |
| oligos_6nt_mkv4_m1 | MA0772.2 | oligos_6nt_mkv4_m1 | IRF7 | 0.784 | 0.471 | 11 | 13 | 9 | 15 | 0.6000 | 0.8182 | 0.6923 | R | 2 |
| oligos_6nt_mkv4_m1 | MA0517.2 | oligos_6nt_mkv4_m1 | STAT1::STAT2 | 0.735 | 0.441 | 11 | 13 | 9 | 15 | 0.6000 | 0.8182 | 0.6923 | D | 2 |
| oligos_6nt_mkv4_m1 | MA0624.3 | oligos_6nt_mkv4_m1 | Nfatc1 | 0.800 | 0.436 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | R | 4 |
| oligos_6nt_mkv4_m1 | MA0625.3 | oligos_6nt_mkv4_m1 | NFATC3 | 0.777 | 0.424 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | R | 4 |
| oligos_6nt_mkv4_m1 | MA1125.2 | oligos_6nt_mkv4_m1 | ZNF384 | 0.705 | 0.411 | 11 | 8 | 7 | 12 | 0.5833 | 0.6364 | 0.8750 | R | -1 |
| oligos_6nt_mkv4_m1 | MA1623.2 | oligos_6nt_mkv4_m1 | Stat2 | 0.811 | 0.406 | 11 | 10 | 7 | 14 | 0.5000 | 0.6364 | 0.7000 | R | 4 |
| oligos_6nt_mkv4_m1 | MA0757.2 | oligos_6nt_mkv4_m1 | ONECUT3 | 0.759 | 0.405 | 11 | 12 | 8 | 15 | 0.5333 | 0.7273 | 0.6667 | R | -4 |
Host name rsat Job started 2025-11-25.143944 Job done 2025-11-25.143952 Seconds 1.4 user 1.4 system 0.35 cuser 5.29 ; csystem 0.54