compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Program version 1.118 Quick mode Input files file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file1 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2.tf Output files alignments_1ton_html $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html prefix $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant match_table_html $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html match_table_txt $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab alignments_1ton $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab html_index $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2.tf file1 1 10 6219 file2 879 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file2 1 6 20 file2 2 14 43 file2 3 10 25 file2 4 15 10 file2 5 10 17 file2 6 10 18 file2 7 17 25 file2 8 15 33 file2 9 14 16 file2 10 6 16 file2 11 15 1369 ... 869 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6nt_mkv4_m2 | MA0050.4 | oligos_6nt_mkv4_m2 | Irf1 | 0.869 | 0.652 | 10 | 11 | 9 | 12 | 0.7500 | 0.9000 | 0.8182 | D | -2 |
| oligos_6nt_mkv4_m2 | MA1709.2 | oligos_6nt_mkv4_m2 | ZIM3 | 0.710 | 0.645 | 10 | 11 | 10 | 11 | 0.9091 | 1.0000 | 0.9091 | D | 0 |
| oligos_6nt_mkv4_m2 | MA1623.2 | oligos_6nt_mkv4_m2 | Stat2 | 0.762 | 0.623 | 10 | 10 | 9 | 11 | 0.8182 | 0.9000 | 0.9000 | D | -1 |
| oligos_6nt_mkv4_m2 | MA0652.2 | oligos_6nt_mkv4_m2 | IRF8 | 0.731 | 0.562 | 10 | 13 | 10 | 13 | 0.7692 | 1.0000 | 0.7692 | D | -2 |
| oligos_6nt_mkv4_m2 | MA0517.2 | oligos_6nt_mkv4_m2 | STAT1::STAT2 | 0.712 | 0.548 | 10 | 13 | 10 | 13 | 0.7692 | 1.0000 | 0.7692 | R | -2 |
| oligos_6nt_mkv4_m2 | MA0772.2 | oligos_6nt_mkv4_m2 | IRF7 | 0.707 | 0.544 | 10 | 13 | 10 | 13 | 0.7692 | 1.0000 | 0.7692 | D | -2 |
| oligos_6nt_mkv4_m2 | MA1155.1 | oligos_6nt_mkv4_m2 | ZSCAN4 | 0.784 | 0.522 | 10 | 15 | 10 | 15 | 0.6667 | 1.0000 | 0.6667 | D | -5 |
| oligos_6nt_mkv4_m2 | MA1420.1 | oligos_6nt_mkv4_m2 | IRF5 | 0.730 | 0.521 | 10 | 14 | 10 | 14 | 0.7143 | 1.0000 | 0.7143 | D | -3 |
| oligos_6nt_mkv4_m2 | MA0063.3 | oligos_6nt_mkv4_m2 | NKX2-5 | 0.736 | 0.515 | 10 | 7 | 7 | 10 | 0.7000 | 0.7000 | 1.0000 | D | 1 |
| oligos_6nt_mkv4_m2 | MA1419.2 | oligos_6nt_mkv4_m2 | IRF4 | 0.710 | 0.507 | 10 | 14 | 10 | 14 | 0.7143 | 1.0000 | 0.7143 | D | -2 |
| oligos_6nt_mkv4_m2 | MA0653.1 | oligos_6nt_mkv4_m2 | IRF9 | 0.730 | 0.486 | 10 | 15 | 10 | 15 | 0.6667 | 1.0000 | 0.6667 | D | -4 |
| oligos_6nt_mkv4_m2 | MA0100.4 | oligos_6nt_mkv4_m2 | MYB | 0.801 | 0.481 | 10 | 6 | 6 | 10 | 0.6000 | 0.6000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m2 | MA1418.2 | oligos_6nt_mkv4_m2 | IRF3 | 0.728 | 0.428 | 10 | 17 | 10 | 17 | 0.5882 | 1.0000 | 0.5882 | D | -7 |
| oligos_6nt_mkv4_m2 | MA0693.4 | oligos_6nt_mkv4_m2 | Vdr | 0.760 | 0.415 | 10 | 7 | 6 | 11 | 0.5455 | 0.6000 | 0.8571 | R | 4 |
Host name rsat Job started 2025-11-25.143952 Job done 2025-11-25.143959 Seconds 1.43 user 1.43 system 0.3 cuser 5.38 ; csystem 0.42