One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_6nt_mkv4_m2/peak-motifs_oligos_6nt_mkv4_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m2_shift7 ; 15 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m2_shift7 (oligos_6nt_mkv4_m2)
; oligos_6nt_mkv4_m2; m=0 (reference); ncol1=10; shift=7; ncol=17; -------amACTGAAaa ; Alignment reference a 0 0 0 0 0 0 0 3064 2447 6102 12 38 24 6128 6121 2576 2614 c 0 0 0 0 0 0 0 771 1857 4 6187 223 9 24 65 1166 986 g 0 0 0 0 0 0 0 1146 1006 69 16 291 6160 12 19 1525 1488 t 0 0 0 0 0 0 0 1238 909 44 4 5667 26 55 14 952 1131

MA0050.4_shift5 (Irf1)
; oligos_6nt_mkv4_m2 versus MA0050.4 (Irf1); m=1/14; ncol2=11; w=-2; offset=-2; strand=D; shift=5; score=0.651842; -----tGAAAcTGAAA- ; cor=; Ncor= a 0 0 0 0 0 3724.0 1661.0 13772.0 14795.0 14878.0 1939.0 1900.0 1017.0 14145.0 14424.0 14172.0 0 c 0 0 0 0 0 1292.0 637.0 361.0 253.0 176.0 9822.0 933.0 314.0 298.0 353.0 365.0 0 g 0 0 0 0 0 2035.0 12682.0 1024.0 258.0 240.0 3315.0 274.0 14013.0 775.0 499.0 607.0 0 t 0 0 0 0 0 8589.0 660.0 483.0 334.0 346.0 564.0 12533.0 296.0 422.0 364.0 496.0 0

MA1709.2_shift7 (ZIM3)
; oligos_6nt_mkv4_m2 versus MA1709.2 (ZIM3); m=2/14; ncol2=11; w=0; offset=0; strand=D; shift=7; score=0.645353; -------mAACAGAAAc ; cor=; Ncor= a 0 0 0 0 0 0 0 5336.0 16896.0 16502.0 853.0 17067.0 194.0 15879.0 16933.0 14228.0 2482.0 c 0 0 0 0 0 0 0 8338.0 118.0 107.0 15856.0 38.0 72.0 840.0 90.0 306.0 7474.0 g 0 0 0 0 0 0 0 1327.0 106.0 229.0 435.0 39.0 16877.0 165.0 110.0 575.0 3674.0 t 0 0 0 0 0 0 0 2219.0 100.0 382.0 76.0 76.0 77.0 336.0 87.0 2111.0 3590.0

MA1623.2_shift6 (Stat2)
; oligos_6nt_mkv4_m2 versus MA1623.2 (Stat2); m=3/14; ncol2=10; w=-1; offset=-1; strand=D; shift=6; score=0.623259; ------gAAACAGAAA- ; cor=; Ncor= a 0 0 0 0 0 0 969.0 3554.0 3736.0 3738.0 286.0 3146.0 152.0 3700.0 3747.0 3514.0 0 c 0 0 0 0 0 0 306.0 76.0 75.0 72.0 2907.0 151.0 45.0 49.0 45.0 147.0 0 g 0 0 0 0 0 0 2287.0 168.0 71.0 87.0 524.0 74.0 3707.0 163.0 98.0 157.0 0 t 0 0 0 0 0 0 397.0 161.0 77.0 62.0 242.0 588.0 55.0 47.0 69.0 141.0 0

MA0652.2_shift5 (IRF8)
; oligos_6nt_mkv4_m2 versus MA0652.2 (IRF8); m=4/14; ncol2=13; w=-2; offset=-2; strand=D; shift=5; score=0.562174; -----CGAAACCGAAAC ; cor=; Ncor= a 0 0 0 0 0 63.0 3.0 5878.0 5878.0 5878.0 54.0 6.0 0.0 5878.0 5878.0 5878.0 11.0 c 0 0 0 0 0 5878.0 0.0 2.0 0.0 0.0 5878.0 5878.0 0.0 0.0 0.0 5.0 5878.0 g 0 0 0 0 0 19.0 5878.0 0.0 0.0 0.0 580.0 0.0 5878.0 3.0 2.0 0.0 1061.0 t 0 0 0 0 0 884.0 2.0 0.0 33.0 3.0 6.0 1228.0 0.0 0.0 68.0 0.0 15.0

MA0517.2_rc_shift5 (STAT1::STAT2_rc)
; oligos_6nt_mkv4_m2 versus MA0517.2_rc (STAT1::STAT2_rc); m=5/14; ncol2=13; w=-2; offset=-2; strand=R; shift=5; score=0.547854; -----rGRAAmyGAAAC ; cor=; Ncor= a 0 0 0 0 0 191.0 107.0 442.0 608.0 593.0 241.0 99.0 39.0 600.0 615.0 618.0 2.0 c 0 0 0 0 0 36.0 9.0 4.0 0.0 10.0 161.0 191.0 0.0 4.0 0.0 0.0 467.0 g 0 0 0 0 0 365.0 489.0 170.0 2.0 13.0 111.0 75.0 581.0 13.0 2.0 2.0 148.0 t 0 0 0 0 0 28.0 15.0 4.0 10.0 4.0 107.0 255.0 0.0 3.0 3.0 0.0 3.0

MA0772.2_shift5 (IRF7)
; oligos_6nt_mkv4_m2 versus MA0772.2 (IRF7); m=6/14; ncol2=13; w=-2; offset=-2; strand=D; shift=5; score=0.544209; -----CGAAAryGAAAv ; cor=; Ncor= a 0 0 0 0 0 97.0 36.0 957.0 957.0 957.0 279.0 8.0 30.0 957.0 957.0 957.0 1184.0 c 0 0 0 0 0 957.0 67.0 3.0 0.0 2.0 156.0 582.0 3.0 16.0 3.0 10.0 957.0 g 0 0 0 0 0 50.0 957.0 1.0 0.0 1.0 505.0 2.0 957.0 4.0 3.0 7.0 1235.0 t 0 0 0 0 0 46.0 90.0 0.0 1.0 1.0 17.0 375.0 7.0 5.0 1.0 41.0 301.0

MA1155.1_shift2 (ZSCAN4)
; oligos_6nt_mkv4_m2 versus MA1155.1 (ZSCAN4); m=7/14; ncol2=15; w=-5; offset=-5; strand=D; shift=2; score=0.522338; --tGCACACmCTGaAAa ; cor=; Ncor= a 0 0 257.0 290.0 0.0 1292.0 0.0 1281.0 3.0 772.0 7.0 8.0 3.0 1118.0 1225.0 1269.0 1000.0 c 0 0 383.0 2.0 1676.0 0.0 1665.0 0.0 1702.0 374.0 1684.0 11.0 50.0 107.0 279.0 0.0 200.0 g 0 0 112.0 1737.0 1.0 0.0 0.0 2.0 0.0 320.0 0.0 75.0 1873.0 230.0 0.0 2.0 365.0 t 0 0 1373.0 0.0 0.0 2.0 0.0 2.0 73.0 8.0 2.0 1699.0 218.0 362.0 6.0 1.0 229.0

MA1420.1_shift4 (IRF5)
; oligos_6nt_mkv4_m2 versus MA1420.1 (IRF5); m=8/14; ncol2=14; w=-3; offset=-3; strand=D; shift=4; score=0.52137; ----cCGAAACCGAAmC ; cor=; Ncor= a 0 0 0 0 35.0 10.0 15.0 223.0 224.0 225.0 1.0 0.0 105.0 224.0 206.0 223.0 29.0 c 0 0 0 0 169.0 177.0 3.0 2.0 5.0 0.0 180.0 182.0 30.0 11.0 6.0 84.0 171.0 g 0 0 0 0 22.0 17.0 357.0 6.0 4.0 5.0 0.0 0.0 365.0 7.0 25.0 12.0 25.0 t 0 0 0 0 42.0 38.0 21.0 7.0 44.0 1.0 4.0 37.0 8.0 1.0 40.0 15.0 22.0

MA0063.3_shift8 (NKX2-5)
; oligos_6nt_mkv4_m2 versus MA0063.3 (NKX2-5); m=9/14; ncol2=7; w=0; offset=1; strand=D; shift=8; score=0.515166; --------CACTCAA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 96.0 5246.0 144.0 135.0 222.0 4819.0 4931.0 0 0 c 0 0 0 0 0 0 0 0 5002.0 48.0 5098.0 82.0 4319.0 120.0 165.0 0 0 g 0 0 0 0 0 0 0 0 24.0 76.0 49.0 61.0 62.0 217.0 98.0 0 0 t 0 0 0 0 0 0 0 0 322.0 74.0 153.0 5166.0 841.0 288.0 250.0 0 0

MA1419.2_shift5 (IRF4)
; oligos_6nt_mkv4_m2 versus MA1419.2 (IRF4); m=10/14; ncol2=14; w=-2; offset=-2; strand=D; shift=5; score=0.506873; -----CGAAACCGAAAC ; cor=; Ncor= a 0 0 0 0 0 364.0 350.0 45331.0 45331.0 45331.0 187.0 27.0 57.0 45331.0 45331.0 45331.0 829.0 c 0 0 0 0 0 45331.0 66.0 124.0 8.0 6.0 45331.0 45331.0 6.0 46.0 11.0 15.0 45331.0 g 0 0 0 0 0 87.0 45331.0 91.0 25.0 4.0 593.0 4.0 45331.0 7.0 23.0 4.0 4251.0 t 0 0 0 0 0 5937.0 31.0 112.0 444.0 8.0 497.0 3801.0 3.0 5.0 1002.0 13.0 80.0

MA0653.1_shift3 (IRF9)
; oligos_6nt_mkv4_m2 versus MA0653.1 (IRF9); m=11/14; ncol2=15; w=-4; offset=-4; strand=D; shift=3; score=0.486427; ---AwCGAAACCGAAAC ; cor=; Ncor= a 0 0 0 3467.0 2392.0 49.0 43.0 3467.0 3467.0 3467.0 43.0 16.0 2.0 3467.0 3467.0 3467.0 4.0 c 0 0 0 52.0 498.0 3467.0 3.0 5.0 0.0 2.0 3467.0 3467.0 0.0 2.0 1.0 0.0 3467.0 g 0 0 0 43.0 204.0 33.0 3467.0 1.0 0.0 0.0 197.0 0.0 3467.0 0.0 0.0 0.0 239.0 t 0 0 0 110.0 1076.0 118.0 5.0 0.0 3.0 1.0 9.0 831.0 1.0 0.0 21.0 3.0 2.0

MA0100.4_shift7 (MYB)
; oligos_6nt_mkv4_m2 versus MA0100.4 (MYB); m=12/14; ncol2=6; w=0; offset=0; strand=D; shift=7; score=0.480571; -------CAACTG---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 1478.0 1519.0 0.0 1.0 8.0 0 0 0 0 c 0 0 0 0 0 0 0 1513.0 3.0 2.0 1527.0 60.0 3.0 0 0 0 0 g 0 0 0 0 0 0 0 5.0 39.0 0.0 0.0 68.0 1516.0 0 0 0 0 t 0 0 0 0 0 0 0 9.0 7.0 6.0 0.0 1398.0 0.0 0 0 0 0

MA1418.2_shift0 (IRF3)
; oligos_6nt_mkv4_m2 versus MA1418.2 (IRF3); m=13/14; ncol2=17; w=-7; offset=-7; strand=D; shift=0; score=0.428181; rrAAmGGAAACCGAAAC ; cor=; Ncor= a 8451.0 12887.0 18311.0 19157.0 14210.0 288.0 154.0 19385.0 19350.0 19428.0 423.0 711.0 394.0 19322.0 19386.0 19410.0 569.0 c 700.0 17.0 83.0 214.0 14600.0 7338.0 14.0 15.0 15.0 22.0 18363.0 18316.0 8.0 137.0 51.0 84.0 17758.0 g 14773.0 9047.0 3484.0 193.0 5575.0 26852.0 27999.0 55.0 59.0 43.0 1150.0 3396.0 27995.0 83.0 36.0 56.0 3274.0 t 2099.0 629.0 2153.0 377.0 6865.0 3058.0 19.0 10.0 54.0 324.0 864.0 2348.0 8.0 26.0 486.0 787.0 516.0

MA0693.4_rc_shift11 (Vdr_rc)
; oligos_6nt_mkv4_m2 versus MA0693.4_rc (Vdr_rc); m=14/14; ncol2=7; w=0; offset=4; strand=R; shift=11; score=0.414732; -----------TGAACT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 750.0 2057.0 35628.0 35489.0 1110.0 813.0 c 0 0 0 0 0 0 0 0 0 0 0 826.0 406.0 574.0 1555.0 36028.0 1137.0 g 0 0 0 0 0 0 0 0 0 0 0 661.0 34477.0 655.0 520.0 599.0 644.0 t 0 0 0 0 0 0 0 0 0 0 0 36305.0 1602.0 1685.0 978.0 805.0 35948.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m2_shift7 (oligos_6nt_mkv4_m2)				; oligos_6nt_mkv4_m2; m=0 (reference); ncol1=10; shift=7; ncol=17; -------amACTGAAaa ; Alignment reference a 0 0 0 0 0 0 0 3064 2447 6102 12 38 24 6128 6121 2576 2614 c 0 0 0 0 0 0 0 771 1857 4 6187 223 9 24 65 1166 986 g 0 0 0 0 0 0 0 1146 1006 69 16 291 6160 12 19 1525 1488 t 0 0 0 0 0 0 0 1238 909 44 4 5667 26 55 14 952 1131
MA0050.4_shift5 (Irf1)				; oligos_6nt_mkv4_m2 versus MA0050.4 (Irf1); m=1/14; ncol2=11; w=-2; offset=-2; strand=D; shift=5; score=0.651842; -----tGAAAcTGAAA- ; cor=; Ncor= a 0 0 0 0 0 3724.0 1661.0 13772.0 14795.0 14878.0 1939.0 1900.0 1017.0 14145.0 14424.0 14172.0 0 c 0 0 0 0 0 1292.0 637.0 361.0 253.0 176.0 9822.0 933.0 314.0 298.0 353.0 365.0 0 g 0 0 0 0 0 2035.0 12682.0 1024.0 258.0 240.0 3315.0 274.0 14013.0 775.0 499.0 607.0 0 t 0 0 0 0 0 8589.0 660.0 483.0 334.0 346.0 564.0 12533.0 296.0 422.0 364.0 496.0 0
MA1709.2_shift7 (ZIM3)				; oligos_6nt_mkv4_m2 versus MA1709.2 (ZIM3); m=2/14; ncol2=11; w=0; offset=0; strand=D; shift=7; score=0.645353; -------mAACAGAAAc ; cor=; Ncor= a 0 0 0 0 0 0 0 5336.0 16896.0 16502.0 853.0 17067.0 194.0 15879.0 16933.0 14228.0 2482.0 c 0 0 0 0 0 0 0 8338.0 118.0 107.0 15856.0 38.0 72.0 840.0 90.0 306.0 7474.0 g 0 0 0 0 0 0 0 1327.0 106.0 229.0 435.0 39.0 16877.0 165.0 110.0 575.0 3674.0 t 0 0 0 0 0 0 0 2219.0 100.0 382.0 76.0 76.0 77.0 336.0 87.0 2111.0 3590.0
MA1623.2_shift6 (Stat2)				; oligos_6nt_mkv4_m2 versus MA1623.2 (Stat2); m=3/14; ncol2=10; w=-1; offset=-1; strand=D; shift=6; score=0.623259; ------gAAACAGAAA- ; cor=; Ncor= a 0 0 0 0 0 0 969.0 3554.0 3736.0 3738.0 286.0 3146.0 152.0 3700.0 3747.0 3514.0 0 c 0 0 0 0 0 0 306.0 76.0 75.0 72.0 2907.0 151.0 45.0 49.0 45.0 147.0 0 g 0 0 0 0 0 0 2287.0 168.0 71.0 87.0 524.0 74.0 3707.0 163.0 98.0 157.0 0 t 0 0 0 0 0 0 397.0 161.0 77.0 62.0 242.0 588.0 55.0 47.0 69.0 141.0 0
MA0652.2_shift5 (IRF8)				; oligos_6nt_mkv4_m2 versus MA0652.2 (IRF8); m=4/14; ncol2=13; w=-2; offset=-2; strand=D; shift=5; score=0.562174; -----CGAAACCGAAAC ; cor=; Ncor= a 0 0 0 0 0 63.0 3.0 5878.0 5878.0 5878.0 54.0 6.0 0.0 5878.0 5878.0 5878.0 11.0 c 0 0 0 0 0 5878.0 0.0 2.0 0.0 0.0 5878.0 5878.0 0.0 0.0 0.0 5.0 5878.0 g 0 0 0 0 0 19.0 5878.0 0.0 0.0 0.0 580.0 0.0 5878.0 3.0 2.0 0.0 1061.0 t 0 0 0 0 0 884.0 2.0 0.0 33.0 3.0 6.0 1228.0 0.0 0.0 68.0 0.0 15.0
MA0517.2_rc_shift5 (STAT1::STAT2_rc)				; oligos_6nt_mkv4_m2 versus MA0517.2_rc (STAT1::STAT2_rc); m=5/14; ncol2=13; w=-2; offset=-2; strand=R; shift=5; score=0.547854; -----rGRAAmyGAAAC ; cor=; Ncor= a 0 0 0 0 0 191.0 107.0 442.0 608.0 593.0 241.0 99.0 39.0 600.0 615.0 618.0 2.0 c 0 0 0 0 0 36.0 9.0 4.0 0.0 10.0 161.0 191.0 0.0 4.0 0.0 0.0 467.0 g 0 0 0 0 0 365.0 489.0 170.0 2.0 13.0 111.0 75.0 581.0 13.0 2.0 2.0 148.0 t 0 0 0 0 0 28.0 15.0 4.0 10.0 4.0 107.0 255.0 0.0 3.0 3.0 0.0 3.0
MA0772.2_shift5 (IRF7)				; oligos_6nt_mkv4_m2 versus MA0772.2 (IRF7); m=6/14; ncol2=13; w=-2; offset=-2; strand=D; shift=5; score=0.544209; -----CGAAAryGAAAv ; cor=; Ncor= a 0 0 0 0 0 97.0 36.0 957.0 957.0 957.0 279.0 8.0 30.0 957.0 957.0 957.0 1184.0 c 0 0 0 0 0 957.0 67.0 3.0 0.0 2.0 156.0 582.0 3.0 16.0 3.0 10.0 957.0 g 0 0 0 0 0 50.0 957.0 1.0 0.0 1.0 505.0 2.0 957.0 4.0 3.0 7.0 1235.0 t 0 0 0 0 0 46.0 90.0 0.0 1.0 1.0 17.0 375.0 7.0 5.0 1.0 41.0 301.0
MA1155.1_shift2 (ZSCAN4)				; oligos_6nt_mkv4_m2 versus MA1155.1 (ZSCAN4); m=7/14; ncol2=15; w=-5; offset=-5; strand=D; shift=2; score=0.522338; --tGCACACmCTGaAAa ; cor=; Ncor= a 0 0 257.0 290.0 0.0 1292.0 0.0 1281.0 3.0 772.0 7.0 8.0 3.0 1118.0 1225.0 1269.0 1000.0 c 0 0 383.0 2.0 1676.0 0.0 1665.0 0.0 1702.0 374.0 1684.0 11.0 50.0 107.0 279.0 0.0 200.0 g 0 0 112.0 1737.0 1.0 0.0 0.0 2.0 0.0 320.0 0.0 75.0 1873.0 230.0 0.0 2.0 365.0 t 0 0 1373.0 0.0 0.0 2.0 0.0 2.0 73.0 8.0 2.0 1699.0 218.0 362.0 6.0 1.0 229.0
MA1420.1_shift4 (IRF5)				; oligos_6nt_mkv4_m2 versus MA1420.1 (IRF5); m=8/14; ncol2=14; w=-3; offset=-3; strand=D; shift=4; score=0.52137; ----cCGAAACCGAAmC ; cor=; Ncor= a 0 0 0 0 35.0 10.0 15.0 223.0 224.0 225.0 1.0 0.0 105.0 224.0 206.0 223.0 29.0 c 0 0 0 0 169.0 177.0 3.0 2.0 5.0 0.0 180.0 182.0 30.0 11.0 6.0 84.0 171.0 g 0 0 0 0 22.0 17.0 357.0 6.0 4.0 5.0 0.0 0.0 365.0 7.0 25.0 12.0 25.0 t 0 0 0 0 42.0 38.0 21.0 7.0 44.0 1.0 4.0 37.0 8.0 1.0 40.0 15.0 22.0
MA0063.3_shift8 (NKX2-5)				; oligos_6nt_mkv4_m2 versus MA0063.3 (NKX2-5); m=9/14; ncol2=7; w=0; offset=1; strand=D; shift=8; score=0.515166; --------CACTCAA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 96.0 5246.0 144.0 135.0 222.0 4819.0 4931.0 0 0 c 0 0 0 0 0 0 0 0 5002.0 48.0 5098.0 82.0 4319.0 120.0 165.0 0 0 g 0 0 0 0 0 0 0 0 24.0 76.0 49.0 61.0 62.0 217.0 98.0 0 0 t 0 0 0 0 0 0 0 0 322.0 74.0 153.0 5166.0 841.0 288.0 250.0 0 0
MA1419.2_shift5 (IRF4)				; oligos_6nt_mkv4_m2 versus MA1419.2 (IRF4); m=10/14; ncol2=14; w=-2; offset=-2; strand=D; shift=5; score=0.506873; -----CGAAACCGAAAC ; cor=; Ncor= a 0 0 0 0 0 364.0 350.0 45331.0 45331.0 45331.0 187.0 27.0 57.0 45331.0 45331.0 45331.0 829.0 c 0 0 0 0 0 45331.0 66.0 124.0 8.0 6.0 45331.0 45331.0 6.0 46.0 11.0 15.0 45331.0 g 0 0 0 0 0 87.0 45331.0 91.0 25.0 4.0 593.0 4.0 45331.0 7.0 23.0 4.0 4251.0 t 0 0 0 0 0 5937.0 31.0 112.0 444.0 8.0 497.0 3801.0 3.0 5.0 1002.0 13.0 80.0
MA0653.1_shift3 (IRF9)				; oligos_6nt_mkv4_m2 versus MA0653.1 (IRF9); m=11/14; ncol2=15; w=-4; offset=-4; strand=D; shift=3; score=0.486427; ---AwCGAAACCGAAAC ; cor=; Ncor= a 0 0 0 3467.0 2392.0 49.0 43.0 3467.0 3467.0 3467.0 43.0 16.0 2.0 3467.0 3467.0 3467.0 4.0 c 0 0 0 52.0 498.0 3467.0 3.0 5.0 0.0 2.0 3467.0 3467.0 0.0 2.0 1.0 0.0 3467.0 g 0 0 0 43.0 204.0 33.0 3467.0 1.0 0.0 0.0 197.0 0.0 3467.0 0.0 0.0 0.0 239.0 t 0 0 0 110.0 1076.0 118.0 5.0 0.0 3.0 1.0 9.0 831.0 1.0 0.0 21.0 3.0 2.0
MA0100.4_shift7 (MYB)				; oligos_6nt_mkv4_m2 versus MA0100.4 (MYB); m=12/14; ncol2=6; w=0; offset=0; strand=D; shift=7; score=0.480571; -------CAACTG---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0.0 1478.0 1519.0 0.0 1.0 8.0 0 0 0 0 c 0 0 0 0 0 0 0 1513.0 3.0 2.0 1527.0 60.0 3.0 0 0 0 0 g 0 0 0 0 0 0 0 5.0 39.0 0.0 0.0 68.0 1516.0 0 0 0 0 t 0 0 0 0 0 0 0 9.0 7.0 6.0 0.0 1398.0 0.0 0 0 0 0
MA1418.2_shift0 (IRF3)				; oligos_6nt_mkv4_m2 versus MA1418.2 (IRF3); m=13/14; ncol2=17; w=-7; offset=-7; strand=D; shift=0; score=0.428181; rrAAmGGAAACCGAAAC ; cor=; Ncor= a 8451.0 12887.0 18311.0 19157.0 14210.0 288.0 154.0 19385.0 19350.0 19428.0 423.0 711.0 394.0 19322.0 19386.0 19410.0 569.0 c 700.0 17.0 83.0 214.0 14600.0 7338.0 14.0 15.0 15.0 22.0 18363.0 18316.0 8.0 137.0 51.0 84.0 17758.0 g 14773.0 9047.0 3484.0 193.0 5575.0 26852.0 27999.0 55.0 59.0 43.0 1150.0 3396.0 27995.0 83.0 36.0 56.0 3274.0 t 2099.0 629.0 2153.0 377.0 6865.0 3058.0 19.0 10.0 54.0 324.0 864.0 2348.0 8.0 26.0 486.0 787.0 516.0
MA0693.4_rc_shift11 (Vdr_rc)				; oligos_6nt_mkv4_m2 versus MA0693.4_rc (Vdr_rc); m=14/14; ncol2=7; w=0; offset=4; strand=R; shift=11; score=0.414732; -----------TGAACT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 750.0 2057.0 35628.0 35489.0 1110.0 813.0 c 0 0 0 0 0 0 0 0 0 0 0 826.0 406.0 574.0 1555.0 36028.0 1137.0 g 0 0 0 0 0 0 0 0 0 0 0 661.0 34477.0 655.0 520.0 599.0 644.0 t 0 0 0 0 0 0 0 0 0 0 0 36305.0 1602.0 1685.0 978.0 805.0 35948.0