One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m1_shift4 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m1_shift4 (oligos_7nt_mkv5_m1)
; oligos_7nt_mkv5_m1; m=0 (reference); ncol1=12; shift=4; ncol=16; ----tyATTTTTCAtk ; Alignment reference a 0 0 0 0 2805 2460 9976 297 593 223 248 290 806 10094 2748 2433 c 0 0 0 0 1446 4401 395 277 208 214 1246 1640 9675 324 2441 1518 g 0 0 0 0 2329 1446 451 230 179 108 197 173 255 220 1744 3406 t 0 0 0 0 4727 3000 485 10503 10327 10762 9616 9204 571 669 4374 3950

MA0606.3_rc_shift7 (Nfat5_rc)
; oligos_7nt_mkv5_m1 versus MA0606.3_rc (Nfat5_rc); m=1/10; ncol2=8; w=0; offset=3; strand=R; shift=7; score=0.554291; -------TTTTCCAT- ; cor=; Ncor= a 0 0 0 0 0 0 0 14.0 10.0 9.0 5.0 7.0 11.0 302.0 13.0 0 c 0 0 0 0 0 0 0 19.0 8.0 10.0 15.0 325.0 332.0 9.0 47.0 0 g 0 0 0 0 0 0 0 8.0 4.0 1.0 8.0 8.0 0.0 10.0 17.0 0 t 0 0 0 0 0 0 0 315.0 334.0 336.0 328.0 16.0 13.0 35.0 279.0 0

MA1525.3_rc_shift6 (NFATC4_rc)
; oligos_7nt_mkv5_m1 versus MA1525.3_rc (NFATC4_rc); m=2/10; ncol2=9; w=0; offset=2; strand=R; shift=6; score=0.537973; ------wkTTTCCrt- ; cor=; Ncor= a 0 0 0 0 0 0 3012.0 1164.0 107.0 0.0 0.0 0.0 0.0 4553.0 1505.0 0 c 0 0 0 0 0 0 138.0 1149.0 42.0 0.0 0.0 7139.0 7139.0 43.0 2590.0 0 g 0 0 0 0 0 0 1280.0 6522.0 460.0 0.0 0.0 0.0 0.0 2586.0 715.0 0 t 0 0 0 0 0 0 2709.0 7139.0 7139.0 7139.0 7139.0 0.0 0.0 16.0 7139.0 0

MA0152.3_rc_shift8 (Nfatc2_rc)
; oligos_7nt_mkv5_m1 versus MA0152.3_rc (Nfatc2_rc); m=3/10; ncol2=8; w=0; offset=4; strand=R; shift=8; score=0.523225; --------TTTCCATt ; cor=; Ncor= a 0 0 0 0 0 0 0 0 112.0 35.0 41.0 46.0 26.0 2844.0 121.0 321.0 c 0 0 0 0 0 0 0 0 79.0 45.0 65.0 3133.0 3118.0 101.0 329.0 292.0 g 0 0 0 0 0 0 0 0 104.0 19.0 38.0 27.0 17.0 124.0 206.0 460.0 t 0 0 0 0 0 0 0 0 2944.0 3140.0 3095.0 33.0 78.0 170.0 2583.0 2166.0

MA2124.1_shift6 (Hmga1)
; oligos_7nt_mkv5_m1 versus MA2124.1 (Hmga1); m=4/10; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.52265; ------ATTTTTAw-- ; cor=; Ncor= a 0 0 0 0 0 0 25051.0 820.0 1034.0 695.0 651.0 770.0 24433.0 9680.0 0 0 c 0 0 0 0 0 0 71.0 393.0 200.0 194.0 264.0 409.0 473.0 2348.0 0 0 g 0 0 0 0 0 0 188.0 421.0 303.0 138.0 237.0 294.0 358.0 2438.0 0 0 t 0 0 0 0 0 0 496.0 24172.0 24269.0 24779.0 24654.0 24333.0 542.0 11340.0 0 0

MA1125.2_rc_shift4 (ZNF384_rc)
; oligos_7nt_mkv5_m1 versus MA1125.2_rc (ZNF384_rc); m=5/10; ncol2=8; w=0; offset=0; strand=R; shift=4; score=0.503606; ----ttTTTTTT---- ; cor=; Ncor= a 0 0 0 0 4656.0 4436.0 21.0 191.0 153.0 314.0 188.0 59.0 0 0 0 0 c 0 0 0 0 2898.0 2767.0 0.0 14.0 15.0 26.0 19.0 13.0 0 0 0 0 g 0 0 0 0 3963.0 2908.0 6.0 26.0 13.0 21.0 35.0 7.0 0 0 0 0 t 0 0 0 0 18916.0 20322.0 30406.0 30202.0 30252.0 30072.0 30191.0 30354.0 0 0 0 0

MA1563.2_rc_shift4 (SOX18_rc)
; oligos_7nt_mkv5_m1 versus MA1563.2_rc (SOX18_rc); m=6/10; ncol2=8; w=0; offset=0; strand=R; shift=4; score=0.484484; ----bhATTGTt---- ; cor=; Ncor= a 0 0 0 0 0.0 228.0 447.0 0.0 0.0 2.0 0.0 34.0 0 0 0 0 c 0 0 0 0 424.0 221.0 0.0 17.0 0.0 91.0 0.0 170.0 0 0 0 0 g 0 0 0 0 551.0 0.0 0.0 35.0 0.0 424.0 0.0 81.0 0 0 0 0 t 0 0 0 0 382.0 203.0 0.0 424.0 424.0 0.0 424.0 424.0 0 0 0 0

MA1115.2_rc_shift8 (POU5F1_rc)
; oligos_7nt_mkv5_m1 versus MA1115.2_rc (POU5F1_rc); m=7/10; ncol2=7; w=0; offset=4; strand=R; shift=8; score=0.444523; --------TTTGCAT- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 307.0 838.0 1108.0 1723.0 634.0 12834.0 70.0 0 c 0 0 0 0 0 0 0 0 257.0 1026.0 118.0 548.0 11571.0 67.0 229.0 0 g 0 0 0 0 0 0 0 0 270.0 690.0 132.0 10310.0 192.0 130.0 122.0 0 t 0 0 0 0 0 0 0 0 12280.0 10560.0 11756.0 533.0 717.0 83.0 12693.0 0

MA0868.3_rc_shift5 (SOX8_rc)
; oligos_7nt_mkv5_m1 versus MA0868.3_rc (SOX8_rc); m=8/10; ncol2=7; w=0; offset=1; strand=R; shift=5; score=0.427882; -----yATTGTT---- ; cor=; Ncor= a 0 0 0 0 0 287.0 1827.0 36.0 16.0 70.0 45.0 222.0 0 0 0 0 c 0 0 0 0 0 1827.0 20.0 0.0 0.0 35.0 0.0 263.0 0 0 0 0 g 0 0 0 0 0 208.0 36.0 43.0 0.0 1827.0 0.0 151.0 0 0 0 0 t 0 0 0 0 0 1356.0 273.0 1827.0 1827.0 3.0 1827.0 1827.0 0 0 0 0

MA0757.2_rc_shift0 (ONECUT3_rc)
; oligos_7nt_mkv5_m1 versus MA0757.2_rc (ONECUT3_rc); m=9/10; ncol2=12; w=-4; offset=-4; strand=R; shift=0; score=0.413157; tTATyGATTTTt---- ; cor=; Ncor= a 1182.0 345.0 6080.0 22.0 11.0 5.0 6080.0 11.0 54.0 1221.0 878.0 709.0 0 0 0 0 c 417.0 187.0 7.0 9.0 2130.0 3.0 14.0 41.0 102.0 112.0 498.0 1141.0 0 0 0 0 g 861.0 105.0 6.0 6.0 20.0 6080.0 103.0 5.0 28.0 173.0 274.0 379.0 0 0 0 0 t 3620.0 6080.0 43.0 6080.0 3950.0 23.0 32.0 6080.0 6080.0 6080.0 6080.0 3851.0 0 0 0 0

MA0624.3_rc_shift8 (Nfatc1_rc)
; oligos_7nt_mkv5_m1 versus MA0624.3_rc (Nfatc1_rc); m=10/10; ncol2=6; w=0; offset=4; strand=R; shift=8; score=0.408253; --------TTTCCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 124.0 39.0 54.0 55.0 17.0 5771.0 0 0 c 0 0 0 0 0 0 0 0 43.0 32.0 27.0 6058.0 6106.0 65.0 0 0 g 0 0 0 0 0 0 0 0 77.0 13.0 30.0 16.0 13.0 227.0 0 0 t 0 0 0 0 0 0 0 0 5947.0 6107.0 6080.0 62.0 55.0 128.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m1_shift4 (oligos_7nt_mkv5_m1)				; oligos_7nt_mkv5_m1; m=0 (reference); ncol1=12; shift=4; ncol=16; ----tyATTTTTCAtk ; Alignment reference a 0 0 0 0 2805 2460 9976 297 593 223 248 290 806 10094 2748 2433 c 0 0 0 0 1446 4401 395 277 208 214 1246 1640 9675 324 2441 1518 g 0 0 0 0 2329 1446 451 230 179 108 197 173 255 220 1744 3406 t 0 0 0 0 4727 3000 485 10503 10327 10762 9616 9204 571 669 4374 3950
MA0606.3_rc_shift7 (Nfat5_rc)				; oligos_7nt_mkv5_m1 versus MA0606.3_rc (Nfat5_rc); m=1/10; ncol2=8; w=0; offset=3; strand=R; shift=7; score=0.554291; -------TTTTCCAT- ; cor=; Ncor= a 0 0 0 0 0 0 0 14.0 10.0 9.0 5.0 7.0 11.0 302.0 13.0 0 c 0 0 0 0 0 0 0 19.0 8.0 10.0 15.0 325.0 332.0 9.0 47.0 0 g 0 0 0 0 0 0 0 8.0 4.0 1.0 8.0 8.0 0.0 10.0 17.0 0 t 0 0 0 0 0 0 0 315.0 334.0 336.0 328.0 16.0 13.0 35.0 279.0 0
MA1525.3_rc_shift6 (NFATC4_rc)				; oligos_7nt_mkv5_m1 versus MA1525.3_rc (NFATC4_rc); m=2/10; ncol2=9; w=0; offset=2; strand=R; shift=6; score=0.537973; ------wkTTTCCrt- ; cor=; Ncor= a 0 0 0 0 0 0 3012.0 1164.0 107.0 0.0 0.0 0.0 0.0 4553.0 1505.0 0 c 0 0 0 0 0 0 138.0 1149.0 42.0 0.0 0.0 7139.0 7139.0 43.0 2590.0 0 g 0 0 0 0 0 0 1280.0 6522.0 460.0 0.0 0.0 0.0 0.0 2586.0 715.0 0 t 0 0 0 0 0 0 2709.0 7139.0 7139.0 7139.0 7139.0 0.0 0.0 16.0 7139.0 0
MA0152.3_rc_shift8 (Nfatc2_rc)				; oligos_7nt_mkv5_m1 versus MA0152.3_rc (Nfatc2_rc); m=3/10; ncol2=8; w=0; offset=4; strand=R; shift=8; score=0.523225; --------TTTCCATt ; cor=; Ncor= a 0 0 0 0 0 0 0 0 112.0 35.0 41.0 46.0 26.0 2844.0 121.0 321.0 c 0 0 0 0 0 0 0 0 79.0 45.0 65.0 3133.0 3118.0 101.0 329.0 292.0 g 0 0 0 0 0 0 0 0 104.0 19.0 38.0 27.0 17.0 124.0 206.0 460.0 t 0 0 0 0 0 0 0 0 2944.0 3140.0 3095.0 33.0 78.0 170.0 2583.0 2166.0
MA2124.1_shift6 (Hmga1)				; oligos_7nt_mkv5_m1 versus MA2124.1 (Hmga1); m=4/10; ncol2=8; w=0; offset=2; strand=D; shift=6; score=0.52265; ------ATTTTTAw-- ; cor=; Ncor= a 0 0 0 0 0 0 25051.0 820.0 1034.0 695.0 651.0 770.0 24433.0 9680.0 0 0 c 0 0 0 0 0 0 71.0 393.0 200.0 194.0 264.0 409.0 473.0 2348.0 0 0 g 0 0 0 0 0 0 188.0 421.0 303.0 138.0 237.0 294.0 358.0 2438.0 0 0 t 0 0 0 0 0 0 496.0 24172.0 24269.0 24779.0 24654.0 24333.0 542.0 11340.0 0 0
MA1125.2_rc_shift4 (ZNF384_rc)				; oligos_7nt_mkv5_m1 versus MA1125.2_rc (ZNF384_rc); m=5/10; ncol2=8; w=0; offset=0; strand=R; shift=4; score=0.503606; ----ttTTTTTT---- ; cor=; Ncor= a 0 0 0 0 4656.0 4436.0 21.0 191.0 153.0 314.0 188.0 59.0 0 0 0 0 c 0 0 0 0 2898.0 2767.0 0.0 14.0 15.0 26.0 19.0 13.0 0 0 0 0 g 0 0 0 0 3963.0 2908.0 6.0 26.0 13.0 21.0 35.0 7.0 0 0 0 0 t 0 0 0 0 18916.0 20322.0 30406.0 30202.0 30252.0 30072.0 30191.0 30354.0 0 0 0 0
MA1563.2_rc_shift4 (SOX18_rc)				; oligos_7nt_mkv5_m1 versus MA1563.2_rc (SOX18_rc); m=6/10; ncol2=8; w=0; offset=0; strand=R; shift=4; score=0.484484; ----bhATTGTt---- ; cor=; Ncor= a 0 0 0 0 0.0 228.0 447.0 0.0 0.0 2.0 0.0 34.0 0 0 0 0 c 0 0 0 0 424.0 221.0 0.0 17.0 0.0 91.0 0.0 170.0 0 0 0 0 g 0 0 0 0 551.0 0.0 0.0 35.0 0.0 424.0 0.0 81.0 0 0 0 0 t 0 0 0 0 382.0 203.0 0.0 424.0 424.0 0.0 424.0 424.0 0 0 0 0
MA1115.2_rc_shift8 (POU5F1_rc)				; oligos_7nt_mkv5_m1 versus MA1115.2_rc (POU5F1_rc); m=7/10; ncol2=7; w=0; offset=4; strand=R; shift=8; score=0.444523; --------TTTGCAT- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 307.0 838.0 1108.0 1723.0 634.0 12834.0 70.0 0 c 0 0 0 0 0 0 0 0 257.0 1026.0 118.0 548.0 11571.0 67.0 229.0 0 g 0 0 0 0 0 0 0 0 270.0 690.0 132.0 10310.0 192.0 130.0 122.0 0 t 0 0 0 0 0 0 0 0 12280.0 10560.0 11756.0 533.0 717.0 83.0 12693.0 0
MA0868.3_rc_shift5 (SOX8_rc)				; oligos_7nt_mkv5_m1 versus MA0868.3_rc (SOX8_rc); m=8/10; ncol2=7; w=0; offset=1; strand=R; shift=5; score=0.427882; -----yATTGTT---- ; cor=; Ncor= a 0 0 0 0 0 287.0 1827.0 36.0 16.0 70.0 45.0 222.0 0 0 0 0 c 0 0 0 0 0 1827.0 20.0 0.0 0.0 35.0 0.0 263.0 0 0 0 0 g 0 0 0 0 0 208.0 36.0 43.0 0.0 1827.0 0.0 151.0 0 0 0 0 t 0 0 0 0 0 1356.0 273.0 1827.0 1827.0 3.0 1827.0 1827.0 0 0 0 0
MA0757.2_rc_shift0 (ONECUT3_rc)				; oligos_7nt_mkv5_m1 versus MA0757.2_rc (ONECUT3_rc); m=9/10; ncol2=12; w=-4; offset=-4; strand=R; shift=0; score=0.413157; tTATyGATTTTt---- ; cor=; Ncor= a 1182.0 345.0 6080.0 22.0 11.0 5.0 6080.0 11.0 54.0 1221.0 878.0 709.0 0 0 0 0 c 417.0 187.0 7.0 9.0 2130.0 3.0 14.0 41.0 102.0 112.0 498.0 1141.0 0 0 0 0 g 861.0 105.0 6.0 6.0 20.0 6080.0 103.0 5.0 28.0 173.0 274.0 379.0 0 0 0 0 t 3620.0 6080.0 43.0 6080.0 3950.0 23.0 32.0 6080.0 6080.0 6080.0 6080.0 3851.0 0 0 0 0
MA0624.3_rc_shift8 (Nfatc1_rc)				; oligos_7nt_mkv5_m1 versus MA0624.3_rc (Nfatc1_rc); m=10/10; ncol2=6; w=0; offset=4; strand=R; shift=8; score=0.408253; --------TTTCCA-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 124.0 39.0 54.0 55.0 17.0 5771.0 0 0 c 0 0 0 0 0 0 0 0 43.0 32.0 27.0 6058.0 6106.0 65.0 0 0 g 0 0 0 0 0 0 0 0 77.0 13.0 30.0 16.0 13.0 227.0 0 0 t 0 0 0 0 0 0 0 0 5947.0 6107.0 6080.0 62.0 55.0 128.0 0 0