/var/www/html/rsat/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2.tf
		file1	1	11	6153
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m2 MA1623.2 oligos_7nt_mkv5_m2 Stat2 0.703 0.639 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_7nt_mkv5_m2 MA1709.2 oligos_7nt_mkv5_m2 ZIM3 0.754 0.628 11 11 10 12 0.8333 0.9091 0.9091 D 1
oligos_7nt_mkv5_m2 MA1989.2 oligos_7nt_mkv5_m2 Bcl11B 0.738 0.604 11 9 9 11 0.8182 0.8182 1.0000 D 0
oligos_7nt_mkv5_m2 MA0084.2 oligos_7nt_mkv5_m2 SRY 0.768 0.489 11 7 7 11 0.6364 0.6364 1.0000 D 3
oligos_7nt_mkv5_m2 MA1152.2 oligos_7nt_mkv5_m2 SOX15 0.937 0.469 11 7 6 12 0.5000 0.5455 0.8571 R 5
oligos_7nt_mkv5_m2 MA0868.3 oligos_7nt_mkv5_m2 SOX8 0.719 0.457 11 7 7 11 0.6364 0.6364 1.0000 D 4
oligos_7nt_mkv5_m2 MA0442.3 oligos_7nt_mkv5_m2 SOX10 0.825 0.450 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv5_m2 MA0480.3 oligos_7nt_mkv5_m2 Foxo1 0.869 0.435 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_7nt_mkv5_m2 MA0867.3 oligos_7nt_mkv5_m2 SOX4 0.741 0.432 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_7nt_mkv5_m2 MA0848.1 oligos_7nt_mkv5_m2 FOXO4 0.864 0.432 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_7nt_mkv5_m2 MA0849.1 oligos_7nt_mkv5_m2 FOXO6 0.860 0.430 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_7nt_mkv5_m2 MA0614.1 oligos_7nt_mkv5_m2 Foxj2 0.736 0.429 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv5_m2 MA0157.4 oligos_7nt_mkv5_m2 Foxo3 0.856 0.428 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_7nt_mkv5_m2 MA0852.3 oligos_7nt_mkv5_m2 FOXK1 0.855 0.428 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_7nt_mkv5_m2 MA0613.1 oligos_7nt_mkv5_m2 FOXG1 0.730 0.426 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv5_m2 MA0850.1 oligos_7nt_mkv5_m2 FOXP3 0.849 0.424 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_7nt_mkv5_m2 MA2117.1 oligos_7nt_mkv5_m2 FOXP4 0.847 0.423 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_7nt_mkv5_m2 MA0042.2 oligos_7nt_mkv5_m2 FOXI1 0.845 0.423 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_7nt_mkv5_m2 MA0033.2 oligos_7nt_mkv5_m2 FOXL1 0.845 0.422 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_7nt_mkv5_m2 MA1606.2 oligos_7nt_mkv5_m2 Foxf1 0.838 0.419 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_7nt_mkv5_m2 MA0031.2 oligos_7nt_mkv5_m2 FOXD1 0.833 0.417 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_7nt_mkv5_m2 MA1103.3 oligos_7nt_mkv5_m2 FOXK2 0.831 0.416 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_7nt_mkv5_m2 MA1683.2 oligos_7nt_mkv5_m2 FOXA3 0.829 0.414 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_7nt_mkv5_m2 MA0481.4 oligos_7nt_mkv5_m2 FOXP1 0.825 0.413 11 7 6 12 0.5000 0.5455 0.8571 D -1
oligos_7nt_mkv5_m2 MA1563.2 oligos_7nt_mkv5_m2 SOX18 0.707 0.412 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_7nt_mkv5_m2 MA0514.3 oligos_7nt_mkv5_m2 Sox3 0.824 0.412 11 7 6 12 0.5000 0.5455 0.8571 D 5
oligos_7nt_mkv5_m2 MA1120.2 oligos_7nt_mkv5_m2 SOX13 0.821 0.411 11 7 6 12 0.5000 0.5455 0.8571 D 5
oligos_7nt_mkv5_m2 MA0143.5 oligos_7nt_mkv5_m2 SOX2 0.818 0.409 11 7 6 12 0.5000 0.5455 0.8571 D 5
oligos_7nt_mkv5_m2 MA0593.2 oligos_7nt_mkv5_m2 FOXP2 0.748 0.403 11 9 7 13 0.5385 0.6364 0.7778 D -2 
 Host name	rsat
 Job started	2025-11-25.144049
 Job done	2025-11-25.144103
 Seconds	2.29
	user	2.29
	system	0.67
	cuser	10.14
;	csystem	0.93