/var/www/html/rsat/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3.tf
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m3/peak-motifs_oligos_7nt_mkv5_m3.tf
		file1	1	11	9035
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv5_m3 MA0689.1 oligos_7nt_mkv5_m3 TBX20 0.732 0.732 11 11 11 11 1.0000 1.0000 1.0000 R 0
oligos_7nt_mkv5_m3 MA1107.3 oligos_7nt_mkv5_m3 KLF9 0.852 0.710 11 11 10 12 0.8333 0.9091 0.9091 D 1
oligos_7nt_mkv5_m3 MA0599.1 oligos_7nt_mkv5_m3 KLF5 0.737 0.670 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv5_m3 MA1517.2 oligos_7nt_mkv5_m3 KLF6 0.808 0.661 11 9 9 11 0.8182 0.8182 1.0000 D 2
oligos_7nt_mkv5_m3 MA0690.3 oligos_7nt_mkv5_m3 TBX21 0.727 0.661 11 10 10 11 0.9091 0.9091 1.0000 D 1
oligos_7nt_mkv5_m3 MA1516.2 oligos_7nt_mkv5_m3 KLF3 0.708 0.643 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_7nt_mkv5_m3 MA0741.1 oligos_7nt_mkv5_m3 KLF16 0.755 0.629 11 11 10 12 0.8333 0.9091 0.9091 D 1
oligos_7nt_mkv5_m3 MA1567.3 oligos_7nt_mkv5_m3 Tbx6 0.766 0.627 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_7nt_mkv5_m3 MA0746.3 oligos_7nt_mkv5_m3 SP3 0.748 0.624 11 11 10 12 0.8333 0.9091 0.9091 D 1
oligos_7nt_mkv5_m3 MA2123.1 oligos_7nt_mkv5_m3 Hand1 0.758 0.620 11 9 9 11 0.8182 0.8182 1.0000 D 1
oligos_7nt_mkv5_m3 MA0800.2 oligos_7nt_mkv5_m3 EOMES 0.742 0.607 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_7nt_mkv5_m3 MA1565.2 oligos_7nt_mkv5_m3 TBX18 0.737 0.603 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_7nt_mkv5_m3 MA1515.2 oligos_7nt_mkv5_m3 KLF2 0.823 0.598 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv5_m3 MA1512.2 oligos_7nt_mkv5_m3 KLF11 0.793 0.595 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_7nt_mkv5_m3 MA1566.3 oligos_7nt_mkv5_m3 TBX3 0.722 0.591 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_7nt_mkv5_m3 MA0688.2 oligos_7nt_mkv5_m3 TBX2 0.720 0.589 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_7nt_mkv5_m3 MA0802.2 oligos_7nt_mkv5_m3 TBR1 0.719 0.588 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_7nt_mkv5_m3 MA0807.1 oligos_7nt_mkv5_m3 TBX5 0.793 0.576 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv5_m3 MA0803.1 oligos_7nt_mkv5_m3 TBX15 0.780 0.567 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv5_m3 MA0039.5 oligos_7nt_mkv5_m3 KLF4 0.778 0.566 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv5_m3 MA0801.1 oligos_7nt_mkv5_m3 MGA 0.776 0.565 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv5_m3 MA0805.1 oligos_7nt_mkv5_m3 TBX1 0.767 0.558 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv5_m3 MA1564.2 oligos_7nt_mkv5_m3 SP9 0.743 0.557 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_7nt_mkv5_m3 MA0493.3 oligos_7nt_mkv5_m3 KLF1 0.759 0.552 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv5_m3 MA0806.1 oligos_7nt_mkv5_m3 TBX4 0.756 0.550 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv5_m3 MA0002.3 oligos_7nt_mkv5_m3 Runx1 0.805 0.537 11 9 8 12 0.6667 0.7273 0.8889 R -1
oligos_7nt_mkv5_m3 MA0747.2 oligos_7nt_mkv5_m3 SP8 0.766 0.531 11 11 9 13 0.6923 0.8182 0.8182 D 2
oligos_7nt_mkv5_m3 MA0130.1 oligos_7nt_mkv5_m3 ZNF354C 0.940 0.513 11 6 6 11 0.5455 0.5455 1.0000 D 0
oligos_7nt_mkv5_m3 MA1989.2 oligos_7nt_mkv5_m3 Bcl11B 0.769 0.513 11 9 8 12 0.6667 0.7273 0.8889 D -1
oligos_7nt_mkv5_m3 MA0479.2 oligos_7nt_mkv5_m3 FOXH1 0.830 0.484 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv5_m3 MA1620.2 oligos_7nt_mkv5_m3 Ptf1A 0.779 0.455 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_7nt_mkv5_m3 MA0162.5 oligos_7nt_mkv5_m3 EGR1 0.726 0.447 11 10 8 13 0.6154 0.7273 0.8000 D -2
oligos_7nt_mkv5_m3 MA0103.4 oligos_7nt_mkv5_m3 ZEB1 0.800 0.436 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv5_m3 MA0820.2 oligos_7nt_mkv5_m3 FIGLA 0.765 0.417 11 6 6 11 0.5455 0.5455 1.0000 D 5
oligos_7nt_mkv5_m3 MA0695.2 oligos_7nt_mkv5_m3 ZBTB7C 0.707 0.412 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv5_m3 MA1964.2 oligos_7nt_mkv5_m3 SMAD2 0.750 0.409 11 6 6 11 0.5455 0.5455 1.0000 D 2 
 Host name	rsat
 Job started	2025-11-25.144104
 Job done	2025-11-25.144119
 Seconds	2.71
	user	2.71
	system	0.78
	cuser	11.58
;	csystem	1.09