One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/oligos_7nt_mkv5_m5/peak-motifs_oligos_7nt_mkv5_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m5_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv5_m5_shift0 (oligos_7nt_mkv5_m5) |
 |
|
|
; oligos_7nt_mkv5_m5; m=0 (reference); ncol1=12; shift=0; ncol=12; caCGTCCTAcas
; Alignment reference
a 469 1181 200 84 80 86 57 54 1945 479 1054 389
c 1103 420 2091 113 107 2276 2341 126 202 1477 539 666
g 325 506 106 2183 88 80 52 110 137 345 485 993
t 630 420 130 147 2252 85 77 2237 243 226 449 479
|
| MA1585.2_rc_shift4 (ZKSCAN1_rc) |
 |
|
|
; oligos_7nt_mkv5_m5 versus MA1585.2_rc (ZKSCAN1_rc); m=1/2; ncol2=9; w=0; offset=4; strand=R; shift=4; score=0.432662; ----aCCTACTr
; cor=; Ncor=
a 0 0 0 0 3469.0 27.0 34.0 0.0 6127.0 12.0 0.0 3308.0
c 0 0 0 0 750.0 6075.0 5980.0 0.0 0.0 6092.0 20.0 364.0
g 0 0 0 0 1303.0 12.0 101.0 48.0 0.0 5.0 53.0 2268.0
t 0 0 0 0 605.0 13.0 12.0 6079.0 0.0 18.0 6054.0 187.0
|
| MA0528.3_rc_shift4 (ZNF263_rc) |
 |
|
|
; oligos_7nt_mkv5_m5 versus MA0528.3_rc (ZNF263_rc); m=2/2; ncol2=7; w=0; offset=4; strand=R; shift=4; score=0.41534; ----TCCTCCC-
; cor=; Ncor=
a 0 0 0 0 638.0 717.0 1672.0 620.0 986.0 1192.0 1270.0 0
c 0 0 0 0 1448.0 52741.0 52875.0 163.0 53435.0 52818.0 51804.0 0
g 0 0 0 0 1758.0 2190.0 966.0 1660.0 972.0 1544.0 1659.0 0
t 0 0 0 0 52499.0 695.0 830.0 53900.0 950.0 789.0 1610.0 0
|