compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/peak-motifs_motifs_discovered.tf Output files html_index $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html alignments_1ton $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab match_table_html $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/peak-motifs_motifs_disco_compa.html alignments_1ton_html $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html match_table_txt $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab prefix $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/peak-motifs_motifs_disco_compa Matrices file1 20 matrices $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 1 11 11464 file1 2 10 6219 file1 3 15 3442 file1 4 11 6810 file1 5 10 6758 file1 6 11 5176 file1 7 11 3867 file1 8 14 1297 file1 9 11 4927 file1 10 12 1277 file1 11 12 11307 ... 10 more matrices file2 20 matrices $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 1 11 11464 file2 2 10 6219 file2 3 15 3442 file2 4 11 6810 file2 5 10 6758 file2 6 11 5176 file2 7 11 3867 file2 8 14 1297 file2 9 11 4927 file2 10 12 1277 file2 11 12 11307 ... 10 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| positions_7nt_m5 | positions_7nt_m5 | positions_7nt_m5 | positions_7nt_m5 | 1.000 | 1.000 | 16 | 16 | 16 | 16 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_7nt_m1 | positions_7nt_m1 | positions_7nt_m1 | positions_7nt_m1 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m1 | oligos_7nt_mkv5_m1 | oligos_7nt_mkv5_m1 | oligos_7nt_mkv5_m1 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m1 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m4 | positions_6nt_m4 | positions_6nt_m4 | positions_6nt_m4 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m3 | oligos_7nt_mkv5_m3 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m3 | positions_6nt_m3 | positions_6nt_m3 | positions_6nt_m3 | 1.000 | 1.000 | 14 | 14 | 14 | 14 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m4 | oligos_6nt_mkv4_m4 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m5 | positions_6nt_m5 | positions_6nt_m5 | positions_6nt_m5 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_7nt_m4 | positions_7nt_m4 | positions_7nt_m4 | positions_7nt_m4 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m3 | oligos_6nt_mkv4_m3 | oligos_6nt_mkv4_m3 | oligos_6nt_mkv4_m3 | 1.000 | 1.000 | 15 | 15 | 15 | 15 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_7nt_m3 | positions_7nt_m3 | positions_7nt_m3 | positions_7nt_m3 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m2 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_7nt_m2 | positions_7nt_m2 | positions_7nt_m2 | positions_7nt_m2 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m5 | oligos_7nt_mkv5_m5 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m5 | oligos_6nt_mkv4_m5 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m1 | positions_6nt_m1 | positions_6nt_m1 | positions_6nt_m1 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_6nt_m2 | positions_6nt_m2 | positions_6nt_m2 | positions_6nt_m2 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m4 | oligos_7nt_mkv5_m4 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m2 | oligos_7nt_mkv5_m2 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| positions_7nt_m1 | positions_7nt_m4 | positions_7nt_m1 | positions_7nt_m4 | 0.767 | 0.708 | 12 | 13 | 12 | 13 | 0.9231 | 1.0000 | 0.9231 | D | -1 |
| positions_7nt_m4 | positions_7nt_m1 | positions_7nt_m4 | positions_7nt_m1 | 0.767 | 0.708 | 13 | 12 | 12 | 13 | 0.9231 | 0.9231 | 1.0000 | D | 1 |
| oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m1 | oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m1 | 0.730 | 0.669 | 11 | 12 | 11 | 12 | 0.9167 | 1.0000 | 0.9167 | D | 0 |
| oligos_7nt_mkv5_m1 | oligos_6nt_mkv4_m1 | oligos_7nt_mkv5_m1 | oligos_6nt_mkv4_m1 | 0.730 | 0.669 | 12 | 11 | 11 | 12 | 0.9167 | 0.9167 | 1.0000 | D | 0 |
| positions_7nt_m5 | positions_6nt_m4 | positions_7nt_m5 | positions_6nt_m4 | 0.861 | 0.592 | 16 | 11 | 11 | 16 | 0.6875 | 0.6875 | 1.0000 | R | 1 |
| positions_6nt_m4 | positions_7nt_m5 | positions_6nt_m4 | positions_7nt_m5 | 0.861 | 0.592 | 11 | 16 | 11 | 16 | 0.6875 | 1.0000 | 0.6875 | R | -4 |
| positions_6nt_m4 | oligos_7nt_mkv5_m5 | positions_6nt_m4 | oligos_7nt_mkv5_m5 | 0.761 | 0.585 | 11 | 12 | 10 | 13 | 0.7692 | 0.9091 | 0.8333 | D | 1 |
| oligos_7nt_mkv5_m5 | positions_6nt_m4 | oligos_7nt_mkv5_m5 | positions_6nt_m4 | 0.761 | 0.585 | 12 | 11 | 10 | 13 | 0.7692 | 0.8333 | 0.9091 | D | -1 |
| oligos_7nt_mkv5_m1 | oligos_6nt_mkv4_m3 | oligos_7nt_mkv5_m1 | oligos_6nt_mkv4_m3 | 0.724 | 0.579 | 12 | 15 | 12 | 15 | 0.8000 | 1.0000 | 0.8000 | R | 0 |
| oligos_6nt_mkv4_m3 | oligos_7nt_mkv5_m1 | oligos_6nt_mkv4_m3 | oligos_7nt_mkv5_m1 | 0.724 | 0.579 | 15 | 12 | 12 | 15 | 0.8000 | 0.8000 | 1.0000 | R | 3 |
| oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m2 | 0.723 | 0.445 | 11 | 10 | 8 | 13 | 0.6154 | 0.7273 | 0.8000 | R | 3 |
| oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m1 | oligos_6nt_mkv4_m2 | oligos_6nt_mkv4_m1 | 0.723 | 0.445 | 10 | 11 | 8 | 13 | 0.6154 | 0.8000 | 0.7273 | R | 2 |
Host name rsat Job started 2025-11-25.143917 Job done 2025-11-25.143934 Seconds 3.09 user 3.09 system 0.88 cuser 11.87 ; csystem 1.27