/var/www/html/rsat/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1.tf
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m1/peak-motifs_positions_6nt_m1.tf
		file1	1	11	5176
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_6nt_m1 MA0155.1 positions_6nt_m1 INSM1 0.744 0.682 11 12 11 12 0.9167 1.0000 0.9167 R 0
positions_6nt_m1 MA0753.3 positions_6nt_m1 ZNF740 0.731 0.665 11 10 10 11 0.9091 0.9091 1.0000 D 0
positions_6nt_m1 MA1627.2 positions_6nt_m1 Wt1 0.799 0.600 11 10 9 12 0.7500 0.8182 0.9000 D -1
positions_6nt_m1 MA0737.1 positions_6nt_m1 GLIS3 0.732 0.575 11 14 11 14 0.7857 1.0000 0.7857 D -1
positions_6nt_m1 MA0039.5 positions_6nt_m1 KLF4 0.765 0.557 11 8 8 11 0.7273 0.7273 1.0000 D 3
positions_6nt_m1 MA0767.2 positions_6nt_m1 GCM2 0.720 0.523 11 8 8 11 0.7273 0.7273 1.0000 R 1
positions_6nt_m1 MA0735.2 positions_6nt_m1 GLIS1 0.708 0.519 11 15 11 15 0.7333 1.0000 0.7333 D -2
positions_6nt_m1 MA1578.2 positions_6nt_m1 VEZF1 0.939 0.512 11 6 6 11 0.5455 0.5455 1.0000 D 1
positions_6nt_m1 MA1987.2 positions_6nt_m1 ZNF701 0.757 0.490 11 17 11 17 0.6471 1.0000 0.6471 R 0
positions_6nt_m1 MA1630.3 positions_6nt_m1 ZNF281 0.935 0.467 11 10 7 14 0.5000 0.6364 0.7000 R -3
positions_6nt_m1 MA1548.2 positions_6nt_m1 PLAGL2 0.786 0.459 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 MA0695.2 positions_6nt_m1 ZBTB7C 0.732 0.427 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 MA1515.2 positions_6nt_m1 KLF2 0.725 0.423 11 8 7 12 0.5833 0.6364 0.8750 D -1
positions_6nt_m1 MA1117.2 positions_6nt_m1 RELB 0.844 0.422 11 7 6 12 0.5000 0.5455 0.8571 D -1
positions_6nt_m1 MA2341.1 positions_6nt_m1 FEZF2 0.709 0.413 11 8 7 12 0.5833 0.6364 0.8750 D 4
positions_6nt_m1 MA1604.2 positions_6nt_m1 Ebf2 0.767 0.413 11 9 7 13 0.5385 0.6364 0.7778 D 4
positions_6nt_m1 MA1959.2 positions_6nt_m1 KLF7 0.706 0.412 11 8 7 12 0.5833 0.6364 0.8750 R -1
positions_6nt_m1 MA1644.2 positions_6nt_m1 NFYC 0.821 0.411 11 7 6 12 0.5000 0.5455 0.8571 D 5
positions_6nt_m1 MA0493.3 positions_6nt_m1 KLF1 0.703 0.410 11 8 7 12 0.5833 0.6364 0.8750 R -1
positions_6nt_m1 MA1637.2 positions_6nt_m1 EBF3 0.758 0.408 11 9 7 13 0.5385 0.6364 0.7778 D 4
positions_6nt_m1 MA0741.1 positions_6nt_m1 KLF16 0.870 0.406 11 11 7 15 0.4667 0.6364 0.6364 D -4
positions_6nt_m1 MA0747.2 positions_6nt_m1 SP8 0.705 0.403 11 11 8 14 0.5714 0.7273 0.7273 D -3 
 Host name	rsat
 Job started	2025-11-25.144012
 Job done	2025-11-25.144019
 Seconds	1.27
	user	1.28
	system	0.46
	cuser	5.27
;	csystem	0.64