/var/www/html/rsat/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4.tf
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	html_index   	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4.tf
		file1	1	11	4927
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
positions_6nt_m4 MA2325.1 positions_6nt_m4 EPAS1 0.846 0.693 11 9 9 11 0.8182 0.8182 1.0000 R 0
positions_6nt_m4 MA1560.2 positions_6nt_m4 SOHLH2 0.920 0.669 11 8 8 11 0.7273 0.7273 1.0000 D 0
positions_6nt_m4 MA0616.3 positions_6nt_m4 HES2 0.780 0.638 11 9 9 11 0.8182 0.8182 1.0000 R 0
positions_6nt_m4 MA0626.2 positions_6nt_m4 Npas2 0.874 0.636 11 8 8 11 0.7273 0.7273 1.0000 R 0
positions_6nt_m4 MA0147.4 positions_6nt_m4 MYC 0.874 0.635 11 8 8 11 0.7273 0.7273 1.0000 D 0
positions_6nt_m4 MA0059.2 positions_6nt_m4 MAX::MYC 0.839 0.629 11 10 9 12 0.7500 0.8182 0.9000 R -1
positions_6nt_m4 MA0464.3 positions_6nt_m4 BHLHE40 0.864 0.628 11 8 8 11 0.7273 0.7273 1.0000 D 0
positions_6nt_m4 MA0649.2 positions_6nt_m4 HEY2 0.905 0.603 11 9 8 12 0.6667 0.7273 0.8889 D -1
positions_6nt_m4 MA0823.1 positions_6nt_m4 HEY1 0.790 0.593 11 10 9 12 0.7500 0.8182 0.9000 D -1
positions_6nt_m4 MA0821.2 positions_6nt_m4 HES5 0.781 0.586 11 10 9 12 0.7500 0.8182 0.9000 D -1
positions_6nt_m4 MA0822.1 positions_6nt_m4 HES7 0.761 0.585 11 12 10 13 0.7692 0.9091 0.8333 D -2
positions_6nt_m4 MA0819.3 positions_6nt_m4 CLOCK 0.918 0.584 11 7 7 11 0.6364 0.6364 1.0000 D 0
positions_6nt_m4 MA0664.2 positions_6nt_m4 MLXIPL 0.798 0.580 11 8 8 11 0.7273 0.7273 1.0000 R 1
positions_6nt_m4 MA1493.1 positions_6nt_m4 HES6 0.763 0.572 11 10 9 12 0.7500 0.8182 0.9000 R -1
positions_6nt_m4 MA0663.1 positions_6nt_m4 MLX 0.747 0.560 11 10 9 12 0.7500 0.8182 0.9000 R -1
positions_6nt_m4 MA0632.3 positions_6nt_m4 TCFL5 0.761 0.554 11 8 8 11 0.7273 0.7273 1.0000 D 0
positions_6nt_m4 MA0636.1 positions_6nt_m4 BHLHE41 0.731 0.548 11 10 9 12 0.7500 0.8182 0.9000 R -1
positions_6nt_m4 MA1464.2 positions_6nt_m4 ARNT2 0.745 0.542 11 8 8 11 0.7273 0.7273 1.0000 R 1
positions_6nt_m4 MA1106.2 positions_6nt_m4 HIF1A 0.988 0.539 11 6 6 11 0.5455 0.5455 1.0000 D 2
positions_6nt_m4 MA0104.5 positions_6nt_m4 MYCN 0.738 0.537 11 8 8 11 0.7273 0.7273 1.0000 D 0
positions_6nt_m4 MA1099.3 positions_6nt_m4 HES1 0.737 0.536 11 8 8 11 0.7273 0.7273 1.0000 R 1
positions_6nt_m4 MA0603.2 positions_6nt_m4 Arntl 0.728 0.529 11 8 8 11 0.7273 0.7273 1.0000 R 1
positions_6nt_m4 MA0004.1 positions_6nt_m4 Arnt 0.969 0.529 11 6 6 11 0.5455 0.5455 1.0000 D 1
positions_6nt_m4 MA0692.2 positions_6nt_m4 TFEB 0.724 0.527 11 8 8 11 0.7273 0.7273 1.0000 D 1
positions_6nt_m4 MA0825.2 positions_6nt_m4 MNT 0.952 0.519 11 6 6 11 0.5455 0.5455 1.0000 D 1
positions_6nt_m4 MA0622.2 positions_6nt_m4 Mlxip 0.950 0.518 11 6 6 11 0.5455 0.5455 1.0000 D 1
positions_6nt_m4 MA0058.4 positions_6nt_m4 MAX 0.947 0.517 11 6 6 11 0.5455 0.5455 1.0000 R 1
positions_6nt_m4 MA0871.3 positions_6nt_m4 TFEC 0.881 0.514 11 8 7 12 0.5833 0.6364 0.8750 R -1
positions_6nt_m4 MA0830.3 positions_6nt_m4 TCF4 0.704 0.512 11 8 8 11 0.7273 0.7273 1.0000 D 0
positions_6nt_m4 MA0608.1 positions_6nt_m4 Creb3l2 0.766 0.511 11 9 8 12 0.6667 0.7273 0.8889 D -1
positions_6nt_m4 MA0522.4 positions_6nt_m4 TCF3 0.773 0.492 11 7 7 11 0.6364 0.6364 1.0000 D 1
positions_6nt_m4 MA1648.2 positions_6nt_m4 TCF12 0.753 0.479 11 7 7 11 0.6364 0.6364 1.0000 D 1
positions_6nt_m4 MA2336.1 positions_6nt_m4 ZSCAN21 0.723 0.460 11 7 7 11 0.6364 0.6364 1.0000 R 3
positions_6nt_m4 MA1558.2 positions_6nt_m4 SNAI1 0.720 0.458 11 7 7 11 0.6364 0.6364 1.0000 D 0
positions_6nt_m4 MA0259.2 positions_6nt_m4 ARNT::HIF1A 0.983 0.447 11 5 5 11 0.4545 0.4545 1.0000 D 2
positions_6nt_m4 MA1108.3 positions_6nt_m4 MXI1 0.749 0.409 11 6 6 11 0.5455 0.5455 1.0000 R 1
positions_6nt_m4 MA0820.2 positions_6nt_m4 FIGLA 0.746 0.407 11 6 6 11 0.5455 0.5455 1.0000 R 1 
 Host name	rsat
 Job started	2025-11-25.144026
 Job done	2025-11-25.144042
 Seconds	2.56
	user	2.57
	system	0.86
	cuser	11.18
;	csystem	1.37