One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_6nt_m4/peak-motifs_positions_6nt_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: positions_6nt_m4_shift2 ; 38 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m4_shift2 (positions_6nt_m4)
; positions_6nt_m4; m=0 (reference); ncol1=11; shift=2; ncol=13; --syACGTGCTaa ; Alignment reference a 0 0 1190 868 4086 236 453 115 108 189 234 1779 1550 c 0 0 1250 2027 218 4003 221 294 788 4446 358 1014 1164 g 0 0 1317 771 455 253 3996 93 3876 125 562 909 1090 t 0 0 1170 1261 168 435 257 4425 155 167 3773 1225 1123

MA2325.1_rc_shift2 (EPAS1_rc)
; positions_6nt_m4 versus MA2325.1_rc (EPAS1_rc); m=1/37; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.692566; --skACGTGCg-- ; cor=; Ncor= a 0 0 48.0 13.0 583.0 5.0 3.0 1.0 3.0 44.0 100.0 0 0 c 0 0 255.0 43.0 16.0 626.0 6.0 15.0 1.0 545.0 115.0 0 0 g 0 0 323.0 174.0 36.0 2.0 629.0 4.0 635.0 23.0 352.0 0 0 t 0 0 14.0 410.0 5.0 7.0 2.0 620.0 1.0 28.0 73.0 0 0

MA1560.2_shift2 (SOHLH2)
; positions_6nt_m4 versus MA1560.2 (SOHLH2); m=2/37; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.669276; --gCACGTGc--- ; cor=; Ncor= a 0 0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 0 0 0 c 0 0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 0 0 0 g 0 0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 0 0 0 t 0 0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0 0 0 0

MA0616.3_rc_shift2 (HES2_rc)
; positions_6nt_m4 versus MA0616.3_rc (HES2_rc); m=3/37; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.638323; --rCACGTGcC-- ; cor=; Ncor= a 0 0 3849.0 0.0 8483.0 0.0 129.0 0.0 73.0 1581.0 798.0 0 0 c 0 0 1289.0 8483.0 0.0 8483.0 0.0 2028.0 85.0 8483.0 8483.0 0 0 g 0 0 4634.0 15.0 1098.0 0.0 8483.0 0.0 8483.0 1107.0 1193.0 0 0 t 0 0 512.0 53.0 0.0 0.0 0.0 6455.0 118.0 1501.0 775.0 0 0

MA0626.2_rc_shift2 (Npas2_rc)
; positions_6nt_m4 versus MA0626.2_rc (Npas2_rc); m=4/37; ncol2=8; w=0; offset=0; strand=R; shift=2; score=0.635606; --aCACGTGs--- ; cor=; Ncor= a 0 0 566.0 0.0 999.0 0.0 0.0 0.0 0.0 48.0 0 0 0 c 0 0 188.0 918.0 0.0 918.0 0.0 0.0 0.0 420.0 0 0 0 g 0 0 172.0 0.0 0.0 0.0 918.0 0.0 999.0 377.0 0 0 0 t 0 0 74.0 81.0 0.0 81.0 81.0 999.0 0.0 154.0 0 0 0

MA0147.4_shift2 (MYC)
; positions_6nt_m4 versus MA0147.4 (MYC); m=5/37; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.635348; --CCACGTGc--- ; cor=; Ncor= a 0 0 438.0 44.0 4600.0 54.0 169.0 59.0 23.0 419.0 0 0 0 c 0 0 3746.0 4840.0 59.0 4525.0 157.0 162.0 56.0 2801.0 0 0 0 g 0 0 472.0 31.0 170.0 70.0 4578.0 63.0 4817.0 1198.0 0 0 0 t 0 0 286.0 27.0 113.0 293.0 38.0 4658.0 46.0 524.0 0 0 0

MA0059.2_rc_shift1 (MAX::MYC_rc)
; positions_6nt_m4 versus MA0059.2_rc (MAX::MYC_rc); m=6/37; ncol2=10; w=-1; offset=-1; strand=R; shift=1; score=0.629193; -aCCACGTGsT-- ; cor=; Ncor= a 0 13.0 1.0 0.0 20.0 0.0 1.0 0.0 0.0 1.0 1.0 0 0 c 0 0.0 18.0 21.0 0.0 20.0 0.0 0.0 0.0 9.0 4.0 0 0 g 0 5.0 1.0 0.0 1.0 0.0 20.0 0.0 20.0 9.0 1.0 0 0 t 0 3.0 1.0 0.0 0.0 1.0 0.0 21.0 1.0 2.0 15.0 0 0

MA0464.3_shift2 (BHLHE40)
; positions_6nt_m4 versus MA0464.3 (BHLHE40); m=7/37; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.628422; --kCACGTGm--- ; cor=; Ncor= a 0 0 1391.0 59.0 11222.0 23.0 66.0 167.0 4.0 5927.0 0 0 0 c 0 0 481.0 11222.0 130.0 11222.0 30.0 248.0 12.0 5295.0 0 0 0 g 0 0 5000.0 0.0 78.0 2.0 11222.0 87.0 11222.0 129.0 0 0 0 t 0 0 6222.0 14.0 77.0 32.0 0.0 11222.0 72.0 500.0 0 0 0

MA0649.2_shift1 (HEY2)
; positions_6nt_m4 versus MA0649.2 (HEY2); m=8/37; ncol2=9; w=-1; offset=-1; strand=D; shift=1; score=0.603367; -GrCACGTGy--- ; cor=; Ncor= a 0 107.0 651.0 84.0 1800.0 7.0 27.0 36.0 0.0 50.0 0 0 0 c 0 99.0 305.0 1800.0 0.0 1800.0 72.0 120.0 34.0 1047.0 0 0 0 g 0 1800.0 620.0 83.0 128.0 0.0 1800.0 0.0 1800.0 128.0 0 0 0 t 0 101.0 224.0 58.0 0.0 0.0 0.0 1800.0 30.0 753.0 0 0 0

MA0823.1_shift1 (HEY1)
; positions_6nt_m4 versus MA0823.1 (HEY1); m=9/37; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.592677; -grCACGTGyc-- ; cor=; Ncor= a 0 437.0 1373.0 1.0 3338.0 0.0 0.0 0.0 32.0 333.0 475.0 0 0 c 0 761.0 656.0 3338.0 30.0 3338.0 18.0 474.0 19.0 1762.0 2172.0 0 0 g 0 1788.0 1199.0 3.0 123.0 0.0 3338.0 10.0 3338.0 380.0 373.0 0 0 t 0 352.0 110.0 15.0 21.0 0.0 0.0 3338.0 22.0 863.0 318.0 0 0

MA0821.2_shift1 (HES5)
; positions_6nt_m4 versus MA0821.2 (HES5); m=10/37; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.58585; -grCACGTGyc-- ; cor=; Ncor= a 0 2390.0 4529.0 212.0 9037.0 49.0 467.0 159.0 66.0 339.0 1439.0 0 0 c 0 2209.0 2601.0 10849.0 204.0 10849.0 164.0 1804.0 121.0 6325.0 8460.0 0 0 g 0 8459.0 6320.0 113.0 1812.0 193.0 10849.0 199.0 10849.0 2606.0 2240.0 0 0 t 0 1455.0 358.0 74.0 146.0 472.0 68.0 9045.0 231.0 4524.0 2389.0 0 0

MA0822.1_shift0 (HES7)
; positions_6nt_m4 versus MA0822.1 (HES7); m=11/37; ncol2=12; w=-2; offset=-2; strand=D; shift=0; score=0.585353; yGGCACGTGCCr- ; cor=; Ncor= a 168.0 24.0 160.0 1.0 1864.0 0.0 4.0 3.0 2.0 8.0 0.0 946.0 0 c 790.0 19.0 29.0 1864.0 3.0 1864.0 1.0 3.0 1.0 1864.0 1864.0 47.0 0 g 43.0 1864.0 1864.0 0.0 7.0 0.0 1864.0 1.0 1864.0 5.0 9.0 734.0 0 t 863.0 3.0 2.0 3.0 0.0 0.0 1.0 1864.0 0.0 93.0 9.0 137.0 0

MA0819.3_shift2 (CLOCK)
; positions_6nt_m4 versus MA0819.3 (CLOCK); m=12/37; ncol2=7; w=0; offset=0; strand=D; shift=2; score=0.584375; --aCACGTG---- ; cor=; Ncor= a 0 0 2009.0 146.0 2009.0 0.0 244.0 7.0 5.0 0 0 0 0 c 0 0 584.0 2009.0 3.0 2009.0 11.0 87.0 1.0 0 0 0 0 g 0 0 383.0 0.0 52.0 4.0 2009.0 6.0 2009.0 0 0 0 0 t 0 0 89.0 0.0 0.0 302.0 0.0 2009.0 52.0 0 0 0 0

MA0664.2_rc_shift3 (MLXIPL_rc)
; positions_6nt_m4 versus MA0664.2_rc (MLXIPL_rc); m=13/37; ncol2=8; w=0; offset=1; strand=R; shift=3; score=0.580302; ---CACGTGay-- ; cor=; Ncor= a 0 0 0 0.0 562.0 0.0 0.0 5.0 0.0 468.0 113.0 0 0 c 0 0 0 727.0 3.0 735.0 12.0 2.0 11.0 133.0 220.0 0 0 g 0 0 0 0.0 0.0 2.0 452.0 0.0 448.0 28.0 31.0 0 0 t 0 0 0 0.0 0.0 20.0 2.0 411.0 0.0 126.0 345.0 0 0

MA1493.1_rc_shift1 (HES6_rc)
; positions_6nt_m4 versus MA1493.1_rc (HES6_rc); m=14/37; ncol2=10; w=-1; offset=-1; strand=R; shift=1; score=0.571988; -rACACGTGCC-- ; cor=; Ncor= a 0 209.0 439.0 0.0 439.0 0.0 16.0 11.0 15.0 13.0 43.0 0 0 c 0 0.0 0.0 439.0 29.0 439.0 9.0 9.0 19.0 439.0 439.0 0 0 g 0 152.0 21.0 0.0 7.0 12.0 439.0 0.0 439.0 35.0 39.0 0 0 t 0 79.0 33.0 0.0 0.0 10.0 2.0 439.0 17.0 16.0 12.0 0 0

MA0663.1_rc_shift1 (MLX_rc)
; positions_6nt_m4 versus MA0663.1_rc (MLX_rc); m=15/37; ncol2=10; w=-1; offset=-1; strand=R; shift=1; score=0.559955; -aTCACGTGAy-- ; cor=; Ncor= a 0 235.0 16.0 5.0 315.0 1.0 0.0 0.0 4.0 322.0 41.0 0 0 c 0 6.0 35.0 555.0 1.0 558.0 0.0 6.0 3.0 61.0 110.0 0 0 g 0 84.0 9.0 0.0 1.0 0.0 257.0 0.0 251.0 17.0 4.0 0 0 t 0 23.0 240.0 2.0 2.0 1.0 0.0 234.0 3.0 0.0 177.0 0 0

MA0632.3_shift2 (TCFL5)
; positions_6nt_m4 versus MA0632.3 (TCFL5); m=16/37; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.553779; --kCrCGCGC--- ; cor=; Ncor= a 0 0 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 0 0 0 c 0 0 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 0 0 0 g 0 0 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 0 0 0 t 0 0 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 0 0 0

MA0636.1_rc_shift1 (BHLHE41_rc)
; positions_6nt_m4 versus MA0636.1_rc (BHLHE41_rc); m=17/37; ncol2=10; w=-1; offset=-1; strand=R; shift=1; score=0.548071; -gTCACGTGAy-- ; cor=; Ncor= a 0 1963.0 23.0 0.0 5574.0 0.0 5.0 3.0 1.0 5574.0 59.0 0 0 c 0 985.0 7.0 5574.0 16.0 5574.0 1.0 21.0 3.0 1831.0 5574.0 0 0 g 0 5574.0 1229.0 1.0 16.0 1.0 5574.0 12.0 5574.0 17.0 1046.0 0 0 t 0 74.0 5574.0 1.0 19.0 2.0 1.0 5574.0 2.0 98.0 2894.0 0 0

MA1464.2_rc_shift3 (ARNT2_rc)
; positions_6nt_m4 versus MA1464.2_rc (ARNT2_rc); m=18/37; ncol2=8; w=0; offset=1; strand=R; shift=3; score=0.541639; ---CACGTGay-- ; cor=; Ncor= a 0 0 0 971.0 40622.0 0.0 148.0 460.0 0.0 40622.0 1951.0 0 0 c 0 0 0 40622.0 111.0 40622.0 0.0 532.0 115.0 9525.0 28841.0 0 0 g 0 0 0 0.0 932.0 0.0 40622.0 122.0 40622.0 4901.0 4265.0 0 0 t 0 0 0 14.0 651.0 84.0 0.0 40622.0 505.0 9572.0 11781.0 0 0

MA1106.2_shift4 (HIF1A)
; positions_6nt_m4 versus MA1106.2 (HIF1A); m=19/37; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.538709; ----ACGTGC--- ; cor=; Ncor= a 0 0 0 0 976.0 0.0 1.0 2.0 84.0 88.0 0 0 0 c 0 0 0 0 0.0 979.0 0.0 33.0 41.0 837.0 0 0 0 g 0 0 0 0 2.0 0.0 979.0 11.0 844.0 20.0 0 0 0 t 0 0 0 0 2.0 1.0 0.0 934.0 11.0 35.0 0 0 0

MA0104.5_shift2 (MYCN)
; positions_6nt_m4 versus MA0104.5 (MYCN); m=20/37; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.536556; --CCACGTGG--- ; cor=; Ncor= a 0 0 480.0 34.0 6369.0 22.0 323.0 274.0 7.0 420.0 0 0 0 c 0 0 5341.0 6929.0 56.0 6517.0 122.0 285.0 14.0 743.0 0 0 0 g 0 0 743.0 14.0 285.0 122.0 6517.0 56.0 6929.0 5341.0 0 0 0 t 0 0 420.0 7.0 274.0 323.0 22.0 6369.0 34.0 480.0 0 0 0

MA1099.3_rc_shift3 (HES1_rc)
; positions_6nt_m4 versus MA1099.3_rc (HES1_rc); m=21/37; ncol2=8; w=0; offset=1; strand=R; shift=3; score=0.536077; ---CACGyGcc-- ; cor=; Ncor= a 0 0 0 53.0 18526.0 0.0 791.0 232.0 18.0 8007.0 4239.0 0 0 c 0 0 0 18526.0 0.0 18526.0 0.0 9081.0 0.0 18526.0 18526.0 0 0 g 0 0 0 0.0 4057.0 0.0 18526.0 0.0 18526.0 2072.0 3492.0 0 0 t 0 0 0 1.0 253.0 21.0 0.0 9446.0 464.0 5858.0 3321.0 0 0

MA0603.2_rc_shift3 (Arntl_rc)
; positions_6nt_m4 versus MA0603.2_rc (Arntl_rc); m=22/37; ncol2=8; w=0; offset=1; strand=R; shift=3; score=0.529345; ---CACGTGAc-- ; cor=; Ncor= a 0 0 0 48.0 837.0 3.0 24.0 21.0 0.0 752.0 71.0 0 0 c 0 0 0 938.0 51.0 946.0 9.0 10.0 0.0 143.0 558.0 0 0 g 0 0 0 4.0 58.0 3.0 965.0 16.0 997.0 44.0 125.0 0 0 t 0 0 0 9.0 54.0 48.0 2.0 953.0 3.0 62.0 246.0 0 0

MA0004.1_shift3 (Arnt)
; positions_6nt_m4 versus MA0004.1 (Arnt); m=23/37; ncol2=6; w=0; offset=1; strand=D; shift=3; score=0.528741; ---CACGTG---- ; cor=; Ncor= a 0 0 0 4.0 19.0 0.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 16.0 0.0 20.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0.0 1.0 0.0 20.0 0.0 20.0 0 0 0 0 t 0 0 0 0.0 0.0 0.0 0.0 20.0 0.0 0 0 0 0

MA0692.2_shift3 (TFEB)
; positions_6nt_m4 versus MA0692.2 (TFEB); m=24/37; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.526513; ---CACGTGAy-- ; cor=; Ncor= a 0 0 0 17.0 8715.0 0.0 2762.0 454.0 9.0 8715.0 283.0 0 0 c 0 0 0 8715.0 286.0 8715.0 288.0 169.0 10.0 2342.0 5889.0 0 0 g 0 0 0 0.0 62.0 83.0 8715.0 150.0 8715.0 872.0 558.0 0 0 t 0 0 0 3.0 274.0 1155.0 5.0 8715.0 11.0 807.0 2826.0 0 0

MA0825.2_shift3 (MNT)
; positions_6nt_m4 versus MA0825.2 (MNT); m=25/37; ncol2=6; w=0; offset=1; strand=D; shift=3; score=0.519037; ---CACGTG---- ; cor=; Ncor= a 0 0 0 27.0 681.0 0.0 15.0 0.0 0.0 0 0 0 0 c 0 0 0 681.0 0.0 681.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0.0 0.0 7.0 681.0 15.0 681.0 0 0 0 0 t 0 0 0 5.0 21.0 16.0 0.0 681.0 25.0 0 0 0 0

MA0622.2_shift3 (Mlxip)
; positions_6nt_m4 versus MA0622.2 (Mlxip); m=26/37; ncol2=6; w=0; offset=1; strand=D; shift=3; score=0.518024; ---CACGTG---- ; cor=; Ncor= a 0 0 0 0.0 999.0 0.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 999.0 0.0 999.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0.0 0.0 0.0 999.0 0.0 999.0 0 0 0 0 t 0 0 0 0.0 0.0 0.0 0.0 999.0 0.0 0 0 0 0

MA0058.4_rc_shift3 (MAX_rc)
; positions_6nt_m4 versus MA0058.4_rc (MAX_rc); m=27/37; ncol2=6; w=0; offset=1; strand=R; shift=3; score=0.516607; ---CACGTG---- ; cor=; Ncor= a 0 0 0 36.0 6876.0 19.0 229.0 38.0 0.0 0 0 0 0 c 0 0 0 6876.0 20.0 6876.0 7.0 87.0 0.0 0 0 0 0 g 0 0 0 27.0 159.0 39.0 6876.0 0.0 6876.0 0 0 0 0 t 0 0 0 0.0 69.0 329.0 0.0 6876.0 39.0 0 0 0 0

MA0871.3_rc_shift1 (TFEC_rc)
; positions_6nt_m4 versus MA0871.3_rc (TFEC_rc); m=28/37; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score=0.513718; -GTCACGTG---- ; cor=; Ncor= a 0 1052.0 47.0 0.0 7952.0 0.0 210.0 374.0 0.0 0 0 0 0 c 0 58.0 143.0 7952.0 0.0 7952.0 0.0 145.0 3.0 0 0 0 0 g 0 6900.0 411.0 4.0 0.0 0.0 7952.0 0.0 7952.0 0 0 0 0 t 0 17.0 7952.0 0.0 0.0 69.0 0.0 7952.0 0.0 0 0 0 0

MA0830.3_shift2 (TCF4)
; positions_6nt_m4 versus MA0830.3 (TCF4); m=29/37; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.511691; --gCACCTGc--- ; cor=; Ncor= a 0 0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 0 0 0 c 0 0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 0 0 0 g 0 0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 0 0 0 t 0 0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 0 0 0

MA0608.1_shift1 (Creb3l2)
; positions_6nt_m4 versus MA0608.1 (Creb3l2); m=30/37; ncol2=9; w=-1; offset=-1; strand=D; shift=1; score=0.510688; -KmCACGTGd--- ; cor=; Ncor= a 0 2.0 250.0 1.0 996.0 1.0 1.0 1.0 1.0 250.0 0 0 0 c 0 2.0 623.0 872.0 1.0 996.0 1.0 1.0 143.0 2.0 0 0 0 g 0 745.0 1.0 126.0 1.0 1.0 996.0 1.0 854.0 250.0 0 0 0 t 0 250.0 126.0 1.0 1.0 1.0 1.0 996.0 1.0 498.0 0 0 0

MA0522.4_shift3 (TCF3)
; positions_6nt_m4 versus MA0522.4 (TCF3); m=31/37; ncol2=7; w=0; offset=1; strand=D; shift=3; score=0.492087; ---CACCTGC--- ; cor=; Ncor= a 0 0 0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 0 0 0 c 0 0 0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 0 0 0 g 0 0 0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 0 0 0 t 0 0 0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 0 0 0

MA1648.2_shift3 (TCF12)
; positions_6nt_m4 versus MA1648.2 (TCF12); m=32/37; ncol2=7; w=0; offset=1; strand=D; shift=3; score=0.478865; ---CACCTGC--- ; cor=; Ncor= a 0 0 0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 0 0 0 c 0 0 0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 0 0 0 g 0 0 0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 0 0 0 t 0 0 0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 0 0 0

MA2336.1_rc_shift5 (ZSCAN21_rc)
; positions_6nt_m4 versus MA2336.1_rc (ZSCAN21_rc); m=33/37; ncol2=7; w=0; offset=3; strand=R; shift=5; score= 0.4598; -----AGTGCTT- ; cor=; Ncor= a 0 0 0 0 0 885.0 11.0 11.0 154.0 41.0 10.0 65.0 0 c 0 0 0 0 0 16.0 30.0 22.0 32.0 853.0 25.0 55.0 0 g 0 0 0 0 0 9.0 881.0 21.0 744.0 25.0 16.0 124.0 0 t 0 0 0 0 0 37.0 25.0 893.0 17.0 28.0 896.0 703.0 0

MA1558.2_shift2 (SNAI1)
; positions_6nt_m4 versus MA1558.2 (SNAI1); m=34/37; ncol2=7; w=0; offset=0; strand=D; shift=2; score=0.458495; --rCAGGTG---- ; cor=; Ncor= a 0 0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 0 0 0 0 c 0 0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 0 0 0 0 g 0 0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 0 0 0 0 t 0 0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 0 0 0 0

MA0259.2_shift4 (ARNT::HIF1A)
; positions_6nt_m4 versus MA0259.2 (ARNT::HIF1A); m=35/37; ncol2=5; w=0; offset=2; strand=D; shift=4; score=0.44664; ----ACGTG---- ; cor=; Ncor= a 0 0 0 0 78.0 0.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 2.0 103.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 23.0 0.0 104.0 0.0 104.0 0 0 0 0 t 0 0 0 0 1.0 1.0 0.0 104.0 0.0 0 0 0 0

MA1108.3_rc_shift3 (MXI1_rc)
; positions_6nt_m4 versus MA1108.3_rc (MXI1_rc); m=36/37; ncol2=6; w=0; offset=1; strand=R; shift=3; score=0.408798; ---CATGTG---- ; cor=; Ncor= a 0 0 0 175.0 21541.0 0.0 468.0 7.0 460.0 0 0 0 0 c 0 0 0 21232.0 0.0 1542.0 18.0 170.0 97.0 0 0 0 0 g 0 0 0 114.0 507.0 0.0 21552.0 1.0 21382.0 0 0 0 0 t 0 0 0 527.0 0.0 20506.0 10.0 21870.0 109.0 0 0 0 0

MA0820.2_rc_shift3 (FIGLA_rc)
; positions_6nt_m4 versus MA0820.2_rc (FIGLA_rc); m=37/37; ncol2=6; w=0; offset=1; strand=R; shift=3; score=0.407122; ---CAGGTG---- ; cor=; Ncor= a 0 0 0 65.0 1780.0 0.0 0.0 14.0 29.0 0 0 0 0 c 0 0 0 1780.0 17.0 311.0 527.0 0.0 0.0 0 0 0 0 g 0 0 0 33.0 0.0 1780.0 1780.0 46.0 1780.0 0 0 0 0 t 0 0 0 36.0 56.0 9.0 0.0 1780.0 0.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m4_shift2 (positions_6nt_m4)				; positions_6nt_m4; m=0 (reference); ncol1=11; shift=2; ncol=13; --syACGTGCTaa ; Alignment reference a 0 0 1190 868 4086 236 453 115 108 189 234 1779 1550 c 0 0 1250 2027 218 4003 221 294 788 4446 358 1014 1164 g 0 0 1317 771 455 253 3996 93 3876 125 562 909 1090 t 0 0 1170 1261 168 435 257 4425 155 167 3773 1225 1123
MA2325.1_rc_shift2 (EPAS1_rc)				; positions_6nt_m4 versus MA2325.1_rc (EPAS1_rc); m=1/37; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.692566; --skACGTGCg-- ; cor=; Ncor= a 0 0 48.0 13.0 583.0 5.0 3.0 1.0 3.0 44.0 100.0 0 0 c 0 0 255.0 43.0 16.0 626.0 6.0 15.0 1.0 545.0 115.0 0 0 g 0 0 323.0 174.0 36.0 2.0 629.0 4.0 635.0 23.0 352.0 0 0 t 0 0 14.0 410.0 5.0 7.0 2.0 620.0 1.0 28.0 73.0 0 0
MA1560.2_shift2 (SOHLH2)				; positions_6nt_m4 versus MA1560.2 (SOHLH2); m=2/37; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.669276; --gCACGTGc--- ; cor=; Ncor= a 0 0 172.0 45.0 1212.0 0.0 14.0 36.0 41.0 272.0 0 0 0 c 0 0 264.0 1212.0 0.0 1212.0 0.0 65.0 4.0 1212.0 0 0 0 g 0 0 1212.0 29.0 41.0 11.0 1212.0 0.0 1212.0 172.0 0 0 0 t 0 0 276.0 70.0 0.0 7.0 15.0 1212.0 4.0 153.0 0 0 0
MA0616.3_rc_shift2 (HES2_rc)				; positions_6nt_m4 versus MA0616.3_rc (HES2_rc); m=3/37; ncol2=9; w=0; offset=0; strand=R; shift=2; score=0.638323; --rCACGTGcC-- ; cor=; Ncor= a 0 0 3849.0 0.0 8483.0 0.0 129.0 0.0 73.0 1581.0 798.0 0 0 c 0 0 1289.0 8483.0 0.0 8483.0 0.0 2028.0 85.0 8483.0 8483.0 0 0 g 0 0 4634.0 15.0 1098.0 0.0 8483.0 0.0 8483.0 1107.0 1193.0 0 0 t 0 0 512.0 53.0 0.0 0.0 0.0 6455.0 118.0 1501.0 775.0 0 0
MA0626.2_rc_shift2 (Npas2_rc)				; positions_6nt_m4 versus MA0626.2_rc (Npas2_rc); m=4/37; ncol2=8; w=0; offset=0; strand=R; shift=2; score=0.635606; --aCACGTGs--- ; cor=; Ncor= a 0 0 566.0 0.0 999.0 0.0 0.0 0.0 0.0 48.0 0 0 0 c 0 0 188.0 918.0 0.0 918.0 0.0 0.0 0.0 420.0 0 0 0 g 0 0 172.0 0.0 0.0 0.0 918.0 0.0 999.0 377.0 0 0 0 t 0 0 74.0 81.0 0.0 81.0 81.0 999.0 0.0 154.0 0 0 0
MA0147.4_shift2 (MYC)				; positions_6nt_m4 versus MA0147.4 (MYC); m=5/37; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.635348; --CCACGTGc--- ; cor=; Ncor= a 0 0 438.0 44.0 4600.0 54.0 169.0 59.0 23.0 419.0 0 0 0 c 0 0 3746.0 4840.0 59.0 4525.0 157.0 162.0 56.0 2801.0 0 0 0 g 0 0 472.0 31.0 170.0 70.0 4578.0 63.0 4817.0 1198.0 0 0 0 t 0 0 286.0 27.0 113.0 293.0 38.0 4658.0 46.0 524.0 0 0 0
MA0059.2_rc_shift1 (MAX::MYC_rc)				; positions_6nt_m4 versus MA0059.2_rc (MAX::MYC_rc); m=6/37; ncol2=10; w=-1; offset=-1; strand=R; shift=1; score=0.629193; -aCCACGTGsT-- ; cor=; Ncor= a 0 13.0 1.0 0.0 20.0 0.0 1.0 0.0 0.0 1.0 1.0 0 0 c 0 0.0 18.0 21.0 0.0 20.0 0.0 0.0 0.0 9.0 4.0 0 0 g 0 5.0 1.0 0.0 1.0 0.0 20.0 0.0 20.0 9.0 1.0 0 0 t 0 3.0 1.0 0.0 0.0 1.0 0.0 21.0 1.0 2.0 15.0 0 0
MA0464.3_shift2 (BHLHE40)				; positions_6nt_m4 versus MA0464.3 (BHLHE40); m=7/37; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.628422; --kCACGTGm--- ; cor=; Ncor= a 0 0 1391.0 59.0 11222.0 23.0 66.0 167.0 4.0 5927.0 0 0 0 c 0 0 481.0 11222.0 130.0 11222.0 30.0 248.0 12.0 5295.0 0 0 0 g 0 0 5000.0 0.0 78.0 2.0 11222.0 87.0 11222.0 129.0 0 0 0 t 0 0 6222.0 14.0 77.0 32.0 0.0 11222.0 72.0 500.0 0 0 0
MA0649.2_shift1 (HEY2)				; positions_6nt_m4 versus MA0649.2 (HEY2); m=8/37; ncol2=9; w=-1; offset=-1; strand=D; shift=1; score=0.603367; -GrCACGTGy--- ; cor=; Ncor= a 0 107.0 651.0 84.0 1800.0 7.0 27.0 36.0 0.0 50.0 0 0 0 c 0 99.0 305.0 1800.0 0.0 1800.0 72.0 120.0 34.0 1047.0 0 0 0 g 0 1800.0 620.0 83.0 128.0 0.0 1800.0 0.0 1800.0 128.0 0 0 0 t 0 101.0 224.0 58.0 0.0 0.0 0.0 1800.0 30.0 753.0 0 0 0
MA0823.1_shift1 (HEY1)				; positions_6nt_m4 versus MA0823.1 (HEY1); m=9/37; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.592677; -grCACGTGyc-- ; cor=; Ncor= a 0 437.0 1373.0 1.0 3338.0 0.0 0.0 0.0 32.0 333.0 475.0 0 0 c 0 761.0 656.0 3338.0 30.0 3338.0 18.0 474.0 19.0 1762.0 2172.0 0 0 g 0 1788.0 1199.0 3.0 123.0 0.0 3338.0 10.0 3338.0 380.0 373.0 0 0 t 0 352.0 110.0 15.0 21.0 0.0 0.0 3338.0 22.0 863.0 318.0 0 0
MA0821.2_shift1 (HES5)				; positions_6nt_m4 versus MA0821.2 (HES5); m=10/37; ncol2=10; w=-1; offset=-1; strand=D; shift=1; score=0.58585; -grCACGTGyc-- ; cor=; Ncor= a 0 2390.0 4529.0 212.0 9037.0 49.0 467.0 159.0 66.0 339.0 1439.0 0 0 c 0 2209.0 2601.0 10849.0 204.0 10849.0 164.0 1804.0 121.0 6325.0 8460.0 0 0 g 0 8459.0 6320.0 113.0 1812.0 193.0 10849.0 199.0 10849.0 2606.0 2240.0 0 0 t 0 1455.0 358.0 74.0 146.0 472.0 68.0 9045.0 231.0 4524.0 2389.0 0 0
MA0822.1_shift0 (HES7)				; positions_6nt_m4 versus MA0822.1 (HES7); m=11/37; ncol2=12; w=-2; offset=-2; strand=D; shift=0; score=0.585353; yGGCACGTGCCr- ; cor=; Ncor= a 168.0 24.0 160.0 1.0 1864.0 0.0 4.0 3.0 2.0 8.0 0.0 946.0 0 c 790.0 19.0 29.0 1864.0 3.0 1864.0 1.0 3.0 1.0 1864.0 1864.0 47.0 0 g 43.0 1864.0 1864.0 0.0 7.0 0.0 1864.0 1.0 1864.0 5.0 9.0 734.0 0 t 863.0 3.0 2.0 3.0 0.0 0.0 1.0 1864.0 0.0 93.0 9.0 137.0 0
MA0819.3_shift2 (CLOCK)				; positions_6nt_m4 versus MA0819.3 (CLOCK); m=12/37; ncol2=7; w=0; offset=0; strand=D; shift=2; score=0.584375; --aCACGTG---- ; cor=; Ncor= a 0 0 2009.0 146.0 2009.0 0.0 244.0 7.0 5.0 0 0 0 0 c 0 0 584.0 2009.0 3.0 2009.0 11.0 87.0 1.0 0 0 0 0 g 0 0 383.0 0.0 52.0 4.0 2009.0 6.0 2009.0 0 0 0 0 t 0 0 89.0 0.0 0.0 302.0 0.0 2009.0 52.0 0 0 0 0
MA0664.2_rc_shift3 (MLXIPL_rc)				; positions_6nt_m4 versus MA0664.2_rc (MLXIPL_rc); m=13/37; ncol2=8; w=0; offset=1; strand=R; shift=3; score=0.580302; ---CACGTGay-- ; cor=; Ncor= a 0 0 0 0.0 562.0 0.0 0.0 5.0 0.0 468.0 113.0 0 0 c 0 0 0 727.0 3.0 735.0 12.0 2.0 11.0 133.0 220.0 0 0 g 0 0 0 0.0 0.0 2.0 452.0 0.0 448.0 28.0 31.0 0 0 t 0 0 0 0.0 0.0 20.0 2.0 411.0 0.0 126.0 345.0 0 0
MA1493.1_rc_shift1 (HES6_rc)				; positions_6nt_m4 versus MA1493.1_rc (HES6_rc); m=14/37; ncol2=10; w=-1; offset=-1; strand=R; shift=1; score=0.571988; -rACACGTGCC-- ; cor=; Ncor= a 0 209.0 439.0 0.0 439.0 0.0 16.0 11.0 15.0 13.0 43.0 0 0 c 0 0.0 0.0 439.0 29.0 439.0 9.0 9.0 19.0 439.0 439.0 0 0 g 0 152.0 21.0 0.0 7.0 12.0 439.0 0.0 439.0 35.0 39.0 0 0 t 0 79.0 33.0 0.0 0.0 10.0 2.0 439.0 17.0 16.0 12.0 0 0
MA0663.1_rc_shift1 (MLX_rc)				; positions_6nt_m4 versus MA0663.1_rc (MLX_rc); m=15/37; ncol2=10; w=-1; offset=-1; strand=R; shift=1; score=0.559955; -aTCACGTGAy-- ; cor=; Ncor= a 0 235.0 16.0 5.0 315.0 1.0 0.0 0.0 4.0 322.0 41.0 0 0 c 0 6.0 35.0 555.0 1.0 558.0 0.0 6.0 3.0 61.0 110.0 0 0 g 0 84.0 9.0 0.0 1.0 0.0 257.0 0.0 251.0 17.0 4.0 0 0 t 0 23.0 240.0 2.0 2.0 1.0 0.0 234.0 3.0 0.0 177.0 0 0
MA0632.3_shift2 (TCFL5)				; positions_6nt_m4 versus MA0632.3 (TCFL5); m=16/37; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.553779; --kCrCGCGC--- ; cor=; Ncor= a 0 0 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 0 0 0 c 0 0 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 0 0 0 g 0 0 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 0 0 0 t 0 0 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 0 0 0
MA0636.1_rc_shift1 (BHLHE41_rc)				; positions_6nt_m4 versus MA0636.1_rc (BHLHE41_rc); m=17/37; ncol2=10; w=-1; offset=-1; strand=R; shift=1; score=0.548071; -gTCACGTGAy-- ; cor=; Ncor= a 0 1963.0 23.0 0.0 5574.0 0.0 5.0 3.0 1.0 5574.0 59.0 0 0 c 0 985.0 7.0 5574.0 16.0 5574.0 1.0 21.0 3.0 1831.0 5574.0 0 0 g 0 5574.0 1229.0 1.0 16.0 1.0 5574.0 12.0 5574.0 17.0 1046.0 0 0 t 0 74.0 5574.0 1.0 19.0 2.0 1.0 5574.0 2.0 98.0 2894.0 0 0
MA1464.2_rc_shift3 (ARNT2_rc)				; positions_6nt_m4 versus MA1464.2_rc (ARNT2_rc); m=18/37; ncol2=8; w=0; offset=1; strand=R; shift=3; score=0.541639; ---CACGTGay-- ; cor=; Ncor= a 0 0 0 971.0 40622.0 0.0 148.0 460.0 0.0 40622.0 1951.0 0 0 c 0 0 0 40622.0 111.0 40622.0 0.0 532.0 115.0 9525.0 28841.0 0 0 g 0 0 0 0.0 932.0 0.0 40622.0 122.0 40622.0 4901.0 4265.0 0 0 t 0 0 0 14.0 651.0 84.0 0.0 40622.0 505.0 9572.0 11781.0 0 0
MA1106.2_shift4 (HIF1A)				; positions_6nt_m4 versus MA1106.2 (HIF1A); m=19/37; ncol2=6; w=0; offset=2; strand=D; shift=4; score=0.538709; ----ACGTGC--- ; cor=; Ncor= a 0 0 0 0 976.0 0.0 1.0 2.0 84.0 88.0 0 0 0 c 0 0 0 0 0.0 979.0 0.0 33.0 41.0 837.0 0 0 0 g 0 0 0 0 2.0 0.0 979.0 11.0 844.0 20.0 0 0 0 t 0 0 0 0 2.0 1.0 0.0 934.0 11.0 35.0 0 0 0
MA0104.5_shift2 (MYCN)				; positions_6nt_m4 versus MA0104.5 (MYCN); m=20/37; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.536556; --CCACGTGG--- ; cor=; Ncor= a 0 0 480.0 34.0 6369.0 22.0 323.0 274.0 7.0 420.0 0 0 0 c 0 0 5341.0 6929.0 56.0 6517.0 122.0 285.0 14.0 743.0 0 0 0 g 0 0 743.0 14.0 285.0 122.0 6517.0 56.0 6929.0 5341.0 0 0 0 t 0 0 420.0 7.0 274.0 323.0 22.0 6369.0 34.0 480.0 0 0 0
MA1099.3_rc_shift3 (HES1_rc)				; positions_6nt_m4 versus MA1099.3_rc (HES1_rc); m=21/37; ncol2=8; w=0; offset=1; strand=R; shift=3; score=0.536077; ---CACGyGcc-- ; cor=; Ncor= a 0 0 0 53.0 18526.0 0.0 791.0 232.0 18.0 8007.0 4239.0 0 0 c 0 0 0 18526.0 0.0 18526.0 0.0 9081.0 0.0 18526.0 18526.0 0 0 g 0 0 0 0.0 4057.0 0.0 18526.0 0.0 18526.0 2072.0 3492.0 0 0 t 0 0 0 1.0 253.0 21.0 0.0 9446.0 464.0 5858.0 3321.0 0 0
MA0603.2_rc_shift3 (Arntl_rc)				; positions_6nt_m4 versus MA0603.2_rc (Arntl_rc); m=22/37; ncol2=8; w=0; offset=1; strand=R; shift=3; score=0.529345; ---CACGTGAc-- ; cor=; Ncor= a 0 0 0 48.0 837.0 3.0 24.0 21.0 0.0 752.0 71.0 0 0 c 0 0 0 938.0 51.0 946.0 9.0 10.0 0.0 143.0 558.0 0 0 g 0 0 0 4.0 58.0 3.0 965.0 16.0 997.0 44.0 125.0 0 0 t 0 0 0 9.0 54.0 48.0 2.0 953.0 3.0 62.0 246.0 0 0
MA0004.1_shift3 (Arnt)				; positions_6nt_m4 versus MA0004.1 (Arnt); m=23/37; ncol2=6; w=0; offset=1; strand=D; shift=3; score=0.528741; ---CACGTG---- ; cor=; Ncor= a 0 0 0 4.0 19.0 0.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 16.0 0.0 20.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0.0 1.0 0.0 20.0 0.0 20.0 0 0 0 0 t 0 0 0 0.0 0.0 0.0 0.0 20.0 0.0 0 0 0 0
MA0692.2_shift3 (TFEB)				; positions_6nt_m4 versus MA0692.2 (TFEB); m=24/37; ncol2=8; w=0; offset=1; strand=D; shift=3; score=0.526513; ---CACGTGAy-- ; cor=; Ncor= a 0 0 0 17.0 8715.0 0.0 2762.0 454.0 9.0 8715.0 283.0 0 0 c 0 0 0 8715.0 286.0 8715.0 288.0 169.0 10.0 2342.0 5889.0 0 0 g 0 0 0 0.0 62.0 83.0 8715.0 150.0 8715.0 872.0 558.0 0 0 t 0 0 0 3.0 274.0 1155.0 5.0 8715.0 11.0 807.0 2826.0 0 0
MA0825.2_shift3 (MNT)				; positions_6nt_m4 versus MA0825.2 (MNT); m=25/37; ncol2=6; w=0; offset=1; strand=D; shift=3; score=0.519037; ---CACGTG---- ; cor=; Ncor= a 0 0 0 27.0 681.0 0.0 15.0 0.0 0.0 0 0 0 0 c 0 0 0 681.0 0.0 681.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0.0 0.0 7.0 681.0 15.0 681.0 0 0 0 0 t 0 0 0 5.0 21.0 16.0 0.0 681.0 25.0 0 0 0 0
MA0622.2_shift3 (Mlxip)				; positions_6nt_m4 versus MA0622.2 (Mlxip); m=26/37; ncol2=6; w=0; offset=1; strand=D; shift=3; score=0.518024; ---CACGTG---- ; cor=; Ncor= a 0 0 0 0.0 999.0 0.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 999.0 0.0 999.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0.0 0.0 0.0 999.0 0.0 999.0 0 0 0 0 t 0 0 0 0.0 0.0 0.0 0.0 999.0 0.0 0 0 0 0
MA0058.4_rc_shift3 (MAX_rc)				; positions_6nt_m4 versus MA0058.4_rc (MAX_rc); m=27/37; ncol2=6; w=0; offset=1; strand=R; shift=3; score=0.516607; ---CACGTG---- ; cor=; Ncor= a 0 0 0 36.0 6876.0 19.0 229.0 38.0 0.0 0 0 0 0 c 0 0 0 6876.0 20.0 6876.0 7.0 87.0 0.0 0 0 0 0 g 0 0 0 27.0 159.0 39.0 6876.0 0.0 6876.0 0 0 0 0 t 0 0 0 0.0 69.0 329.0 0.0 6876.0 39.0 0 0 0 0
MA0871.3_rc_shift1 (TFEC_rc)				; positions_6nt_m4 versus MA0871.3_rc (TFEC_rc); m=28/37; ncol2=8; w=-1; offset=-1; strand=R; shift=1; score=0.513718; -GTCACGTG---- ; cor=; Ncor= a 0 1052.0 47.0 0.0 7952.0 0.0 210.0 374.0 0.0 0 0 0 0 c 0 58.0 143.0 7952.0 0.0 7952.0 0.0 145.0 3.0 0 0 0 0 g 0 6900.0 411.0 4.0 0.0 0.0 7952.0 0.0 7952.0 0 0 0 0 t 0 17.0 7952.0 0.0 0.0 69.0 0.0 7952.0 0.0 0 0 0 0
MA0830.3_shift2 (TCF4)				; positions_6nt_m4 versus MA0830.3 (TCF4); m=29/37; ncol2=8; w=0; offset=0; strand=D; shift=2; score=0.511691; --gCACCTGc--- ; cor=; Ncor= a 0 0 4168.0 243.0 27023.0 216.0 356.0 372.0 251.0 1694.0 0 0 0 c 0 0 5062.0 28686.0 635.0 26765.0 27724.0 1016.0 540.0 18935.0 0 0 0 g 0 0 18498.0 321.0 1295.0 1733.0 1197.0 679.0 28432.0 5281.0 0 0 0 t 0 0 1737.0 215.0 512.0 751.0 188.0 27398.0 242.0 3555.0 0 0 0
MA0608.1_shift1 (Creb3l2)				; positions_6nt_m4 versus MA0608.1 (Creb3l2); m=30/37; ncol2=9; w=-1; offset=-1; strand=D; shift=1; score=0.510688; -KmCACGTGd--- ; cor=; Ncor= a 0 2.0 250.0 1.0 996.0 1.0 1.0 1.0 1.0 250.0 0 0 0 c 0 2.0 623.0 872.0 1.0 996.0 1.0 1.0 143.0 2.0 0 0 0 g 0 745.0 1.0 126.0 1.0 1.0 996.0 1.0 854.0 250.0 0 0 0 t 0 250.0 126.0 1.0 1.0 1.0 1.0 996.0 1.0 498.0 0 0 0
MA0522.4_shift3 (TCF3)				; positions_6nt_m4 versus MA0522.4 (TCF3); m=31/37; ncol2=7; w=0; offset=1; strand=D; shift=3; score=0.492087; ---CACCTGC--- ; cor=; Ncor= a 0 0 0 469.0 28916.0 309.0 1127.0 380.0 1089.0 295.0 0 0 0 c 0 0 0 29379.0 396.0 28640.0 27199.0 2003.0 1038.0 28742.0 0 0 0 g 0 0 0 708.0 1574.0 1362.0 2652.0 1339.0 28642.0 987.0 0 0 0 t 0 0 0 705.0 375.0 950.0 283.0 27539.0 492.0 1237.0 0 0 0
MA1648.2_shift3 (TCF12)				; positions_6nt_m4 versus MA1648.2 (TCF12); m=32/37; ncol2=7; w=0; offset=1; strand=D; shift=3; score=0.478865; ---CACCTGC--- ; cor=; Ncor= a 0 0 0 955.0 52529.0 744.0 1913.0 1380.0 2819.0 1089.0 0 0 0 c 0 0 0 57848.0 2007.0 55598.0 55765.0 3886.0 2088.0 55061.0 0 0 0 g 0 0 0 1186.0 5607.0 3780.0 3536.0 2625.0 55922.0 2314.0 0 0 0 t 0 0 0 1887.0 1733.0 1754.0 662.0 53985.0 1047.0 3412.0 0 0 0
MA2336.1_rc_shift5 (ZSCAN21_rc)				; positions_6nt_m4 versus MA2336.1_rc (ZSCAN21_rc); m=33/37; ncol2=7; w=0; offset=3; strand=R; shift=5; score= 0.4598; -----AGTGCTT- ; cor=; Ncor= a 0 0 0 0 0 885.0 11.0 11.0 154.0 41.0 10.0 65.0 0 c 0 0 0 0 0 16.0 30.0 22.0 32.0 853.0 25.0 55.0 0 g 0 0 0 0 0 9.0 881.0 21.0 744.0 25.0 16.0 124.0 0 t 0 0 0 0 0 37.0 25.0 893.0 17.0 28.0 896.0 703.0 0
MA1558.2_shift2 (SNAI1)				; positions_6nt_m4 versus MA1558.2 (SNAI1); m=34/37; ncol2=7; w=0; offset=0; strand=D; shift=2; score=0.458495; --rCAGGTG---- ; cor=; Ncor= a 0 0 6993.0 446.0 19982.0 1766.0 72.0 38.0 706.0 0 0 0 0 c 0 0 501.0 19982.0 297.0 517.0 5.0 0.0 0.0 0 0 0 0 g 0 0 12989.0 275.0 91.0 19982.0 19982.0 42.0 19982.0 0 0 0 0 t 0 0 3518.0 340.0 568.0 306.0 28.0 19982.0 311.0 0 0 0 0
MA0259.2_shift4 (ARNT::HIF1A)				; positions_6nt_m4 versus MA0259.2 (ARNT::HIF1A); m=35/37; ncol2=5; w=0; offset=2; strand=D; shift=4; score=0.44664; ----ACGTG---- ; cor=; Ncor= a 0 0 0 0 78.0 0.0 0.0 0.0 0.0 0 0 0 0 c 0 0 0 0 2.0 103.0 0.0 0.0 0.0 0 0 0 0 g 0 0 0 0 23.0 0.0 104.0 0.0 104.0 0 0 0 0 t 0 0 0 0 1.0 1.0 0.0 104.0 0.0 0 0 0 0
MA1108.3_rc_shift3 (MXI1_rc)				; positions_6nt_m4 versus MA1108.3_rc (MXI1_rc); m=36/37; ncol2=6; w=0; offset=1; strand=R; shift=3; score=0.408798; ---CATGTG---- ; cor=; Ncor= a 0 0 0 175.0 21541.0 0.0 468.0 7.0 460.0 0 0 0 0 c 0 0 0 21232.0 0.0 1542.0 18.0 170.0 97.0 0 0 0 0 g 0 0 0 114.0 507.0 0.0 21552.0 1.0 21382.0 0 0 0 0 t 0 0 0 527.0 0.0 20506.0 10.0 21870.0 109.0 0 0 0 0
MA0820.2_rc_shift3 (FIGLA_rc)				; positions_6nt_m4 versus MA0820.2_rc (FIGLA_rc); m=37/37; ncol2=6; w=0; offset=1; strand=R; shift=3; score=0.407122; ---CAGGTG---- ; cor=; Ncor= a 0 0 0 65.0 1780.0 0.0 0.0 14.0 29.0 0 0 0 0 c 0 0 0 1780.0 17.0 311.0 527.0 0.0 0.0 0 0 0 0 g 0 0 0 33.0 0.0 1780.0 1780.0 46.0 1780.0 0 0 0 0 t 0 0 0 36.0 56.0 9.0 0.0 1780.0 0.0 0 0 0 0