RSAT - compare-matrices result

Analysis: result (25/11/2025 14:39)

Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2.tf -format2 transfac -file2 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/data/ref_motifs/peak-motifs_ref_motifs.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_7nt_m2/peak-motifs_positions_7nt_m2_vs_ref

Input files

Type	File
file1	peak-motifs_positions_7nt_m2.tf
file2	../../../data/ref_motifs/peak-motifs_ref_motifs.tf

Output files

Type	File
match_table_txt	peak-motifs_positions_7nt_m2_vs_ref.tab
match_table_html	peak-motifs_positions_7nt_m2_vs_ref.html
alignments_1ton	peak-motifs_positions_7nt_m2_vs_ref_alignments_1ton.tab
alignments_1ton_html	peak-motifs_positions_7nt_m2_vs_ref_alignments_1ton.html

Directories

Type	Directory
output	.
aligned_logos	peak-motifs_positions_7nt_m2_vs_ref_aligned_logos