compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5.tf file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt Output files match_table_html $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html match_table_txt $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab alignments_1ton $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab alignments_1ton_html $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html prefix $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant html_index $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5.tf file1 1 16 523 file2 879 matrices $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt file2 1 6 20 file2 2 14 43 file2 3 10 25 file2 4 15 10 file2 5 10 17 file2 6 10 18 file2 7 17 25 file2 8 15 33 file2 9 14 16 file2 10 6 16 file2 11 15 1369 ... 869 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| positions_7nt_m5 | MA0059.2 | positions_7nt_m5 | MAX::MYC | 0.798 | 0.499 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | R | 3 |
| positions_7nt_m5 | MA0821.2 | positions_7nt_m5 | HES5 | 0.792 | 0.495 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | R | 3 |
| positions_7nt_m5 | MA0823.1 | positions_7nt_m5 | HEY1 | 0.777 | 0.485 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | R | 3 |
| positions_7nt_m5 | MA1560.2 | positions_7nt_m5 | SOHLH2 | 0.965 | 0.482 | 16 | 8 | 8 | 16 | 0.5000 | 0.5000 | 1.0000 | R | 4 |
| positions_7nt_m5 | MA0616.3 | positions_7nt_m5 | HES2 | 0.839 | 0.472 | 16 | 9 | 9 | 16 | 0.5625 | 0.5625 | 1.0000 | D | 3 |
| positions_7nt_m5 | MA1493.1 | positions_7nt_m5 | HES6 | 0.730 | 0.456 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | D | 3 |
| positions_7nt_m5 | MA0663.1 | positions_7nt_m5 | MLX | 0.723 | 0.452 | 16 | 10 | 10 | 16 | 0.6250 | 0.6250 | 1.0000 | D | 3 |
| positions_7nt_m5 | MA0649.2 | positions_7nt_m5 | HEY2 | 0.791 | 0.445 | 16 | 9 | 9 | 16 | 0.5625 | 0.5625 | 1.0000 | D | 3 |
| positions_7nt_m5 | MA0464.3 | positions_7nt_m5 | BHLHE40 | 0.878 | 0.439 | 16 | 8 | 8 | 16 | 0.5000 | 0.5000 | 1.0000 | R | 4 |
| positions_7nt_m5 | MA2325.1 | positions_7nt_m5 | EPAS1 | 0.770 | 0.433 | 16 | 9 | 9 | 16 | 0.5625 | 0.5625 | 1.0000 | R | 4 |
| positions_7nt_m5 | MA0664.2 | positions_7nt_m5 | MLXIPL | 0.864 | 0.432 | 16 | 8 | 8 | 16 | 0.5000 | 0.5000 | 1.0000 | D | 3 |
| positions_7nt_m5 | MA1631.2 | positions_7nt_m5 | ASCL1 | 0.754 | 0.424 | 16 | 9 | 9 | 16 | 0.5625 | 0.5625 | 1.0000 | D | 4 |
| positions_7nt_m5 | MA1945.2 | positions_7nt_m5 | ETV5::FIGLA | 0.732 | 0.424 | 16 | 14 | 11 | 19 | 0.5789 | 0.6875 | 0.7857 | R | 5 |
| positions_7nt_m5 | MA0626.2 | positions_7nt_m5 | Npas2 | 0.842 | 0.421 | 16 | 8 | 8 | 16 | 0.5000 | 0.5000 | 1.0000 | D | 4 |
| positions_7nt_m5 | MA1099.3 | positions_7nt_m5 | HES1 | 0.834 | 0.417 | 16 | 8 | 8 | 16 | 0.5000 | 0.5000 | 1.0000 | D | 3 |
| positions_7nt_m5 | MA0147.4 | positions_7nt_m5 | MYC | 0.829 | 0.414 | 16 | 8 | 8 | 16 | 0.5000 | 0.5000 | 1.0000 | R | 4 |
| positions_7nt_m5 | MA1464.2 | positions_7nt_m5 | ARNT2 | 0.813 | 0.407 | 16 | 8 | 8 | 16 | 0.5000 | 0.5000 | 1.0000 | D | 3 |
| positions_7nt_m5 | MA0692.2 | positions_7nt_m5 | TFEB | 0.806 | 0.403 | 16 | 8 | 8 | 16 | 0.5000 | 0.5000 | 1.0000 | D | 5 |
Host name rsat Job started 2025-11-25.144137 Job done 2025-11-25.144145 Seconds 1.54 user 1.55 system 0.4 cuser 5.55 ; csystem 0.54