One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.143236_2025-11-25.143236_C5OFib/results/discovered_motifs/positions_7nt_m5/peak-motifs_positions_7nt_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: positions_7nt_m5_shift0 ; 19 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m5_shift0 (positions_7nt_m5)
; positions_7nt_m5; m=0 (reference); ncol1=16; shift=0; ncol=16; rhaaGCACGTGCttdy ; Alignment reference a 147 135 352 346 32 24 422 60 55 14 48 26 53 60 147 116 c 111 133 34 75 26 429 25 393 19 59 22 438 49 75 108 149 g 150 107 78 49 438 22 63 17 389 25 429 26 75 34 133 112 t 115 148 59 53 27 48 13 53 60 425 24 33 346 354 135 146

MA0059.2_rc_shift3 (MAX::MYC_rc)
; positions_7nt_m5 versus MA0059.2_rc (MAX::MYC_rc); m=1/18; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.498524; ---aCCACGTGsT--- ; cor=; Ncor= a 0 0 0 13.0 1.0 0.0 20.0 0.0 1.0 0.0 0.0 1.0 1.0 0 0 0 c 0 0 0 0.0 18.0 21.0 0.0 20.0 0.0 0.0 0.0 9.0 4.0 0 0 0 g 0 0 0 5.0 1.0 0.0 1.0 0.0 20.0 0.0 20.0 9.0 1.0 0 0 0 t 0 0 0 3.0 1.0 0.0 0.0 1.0 0.0 21.0 1.0 2.0 15.0 0 0 0

MA0821.2_rc_shift3 (HES5_rc)
; positions_7nt_m5 versus MA0821.2_rc (HES5_rc); m=2/18; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.495112; ---grCACGTGyc--- ; cor=; Ncor= a 0 0 0 2389.0 4524.0 231.0 9045.0 68.0 472.0 146.0 74.0 358.0 1455.0 0 0 0 c 0 0 0 2240.0 2606.0 10849.0 199.0 10849.0 193.0 1812.0 113.0 6320.0 8459.0 0 0 0 g 0 0 0 8460.0 6325.0 121.0 1804.0 164.0 10849.0 204.0 10849.0 2601.0 2209.0 0 0 0 t 0 0 0 1439.0 339.0 66.0 159.0 467.0 49.0 9037.0 212.0 4529.0 2390.0 0 0 0

MA0823.1_rc_shift3 (HEY1_rc)
; positions_7nt_m5 versus MA0823.1_rc (HEY1_rc); m=3/18; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.485491; ---grCACGTGyc--- ; cor=; Ncor= a 0 0 0 318.0 863.0 22.0 3338.0 0.0 0.0 21.0 15.0 110.0 352.0 0 0 0 c 0 0 0 373.0 380.0 3338.0 10.0 3338.0 0.0 123.0 3.0 1199.0 1788.0 0 0 0 g 0 0 0 2172.0 1762.0 19.0 474.0 18.0 3338.0 30.0 3338.0 656.0 761.0 0 0 0 t 0 0 0 475.0 333.0 32.0 0.0 0.0 0.0 3338.0 1.0 1373.0 437.0 0 0 0

MA1560.2_rc_shift4 (SOHLH2_rc)
; positions_7nt_m5 versus MA1560.2_rc (SOHLH2_rc); m=4/18; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.482496; ----gCACGTGc---- ; cor=; Ncor= a 0 0 0 0 153.0 4.0 1212.0 15.0 7.0 0.0 70.0 276.0 0 0 0 0 c 0 0 0 0 172.0 1212.0 0.0 1212.0 11.0 41.0 29.0 1212.0 0 0 0 0 g 0 0 0 0 1212.0 4.0 65.0 0.0 1212.0 0.0 1212.0 264.0 0 0 0 0 t 0 0 0 0 272.0 41.0 36.0 14.0 0.0 1212.0 45.0 172.0 0 0 0 0

MA0616.3_shift3 (HES2)
; positions_7nt_m5 versus MA0616.3 (HES2); m=5/18; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.471853; ---GgCACGTGy---- ; cor=; Ncor= a 0 0 0 775.0 1501.0 118.0 6455.0 0.0 0.0 0.0 53.0 512.0 0 0 0 0 c 0 0 0 1193.0 1107.0 8483.0 0.0 8483.0 0.0 1098.0 15.0 4634.0 0 0 0 0 g 0 0 0 8483.0 8483.0 85.0 2028.0 0.0 8483.0 0.0 8483.0 1289.0 0 0 0 0 t 0 0 0 798.0 1581.0 73.0 0.0 129.0 0.0 8483.0 0.0 3849.0 0 0 0 0

MA1493.1_shift3 (HES6)
; positions_7nt_m5 versus MA1493.1 (HES6); m=6/18; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.456436; ---GGCACGTGTy--- ; cor=; Ncor= a 0 0 0 12.0 16.0 17.0 439.0 2.0 10.0 0.0 0.0 33.0 79.0 0 0 0 c 0 0 0 39.0 35.0 439.0 0.0 439.0 12.0 7.0 0.0 21.0 152.0 0 0 0 g 0 0 0 439.0 439.0 19.0 9.0 9.0 439.0 29.0 439.0 0.0 0.0 0 0 0 t 0 0 0 43.0 13.0 15.0 11.0 16.0 0.0 439.0 0.0 439.0 209.0 0 0 0

MA0663.1_shift3 (MLX)
; positions_7nt_m5 versus MA0663.1 (MLX); m=7/18; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.451798; ---rTCACGTGAt--- ; cor=; Ncor= a 0 0 0 177.0 0.0 3.0 234.0 0.0 1.0 2.0 2.0 240.0 23.0 0 0 0 c 0 0 0 4.0 17.0 251.0 0.0 257.0 0.0 1.0 0.0 9.0 84.0 0 0 0 g 0 0 0 110.0 61.0 3.0 6.0 0.0 558.0 1.0 555.0 35.0 6.0 0 0 0 t 0 0 0 41.0 322.0 4.0 0.0 0.0 1.0 315.0 5.0 16.0 235.0 0 0 0

MA0649.2_shift3 (HEY2)
; positions_7nt_m5 versus MA0649.2 (HEY2); m=8/18; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.445215; ---GrCACGTGy---- ; cor=; Ncor= a 0 0 0 107.0 651.0 84.0 1800.0 7.0 27.0 36.0 0.0 50.0 0 0 0 0 c 0 0 0 99.0 305.0 1800.0 0.0 1800.0 72.0 120.0 34.0 1047.0 0 0 0 0 g 0 0 0 1800.0 620.0 83.0 128.0 0.0 1800.0 0.0 1800.0 128.0 0 0 0 0 t 0 0 0 101.0 224.0 58.0 0.0 0.0 0.0 1800.0 30.0 753.0 0 0 0 0

MA0464.3_rc_shift4 (BHLHE40_rc)
; positions_7nt_m5 versus MA0464.3_rc (BHLHE40_rc); m=9/18; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.438984; ----kCACGTGm---- ; cor=; Ncor= a 0 0 0 0 500.0 72.0 11222.0 0.0 32.0 77.0 14.0 6222.0 0 0 0 0 c 0 0 0 0 129.0 11222.0 87.0 11222.0 2.0 78.0 0.0 5000.0 0 0 0 0 g 0 0 0 0 5295.0 12.0 248.0 30.0 11222.0 130.0 11222.0 481.0 0 0 0 0 t 0 0 0 0 5927.0 4.0 167.0 66.0 23.0 11222.0 59.0 1391.0 0 0 0 0

MA2325.1_rc_shift4 (EPAS1_rc)
; positions_7nt_m5 versus MA2325.1_rc (EPAS1_rc); m=10/18; ncol2=9; w=0; offset=4; strand=R; shift=4; score=0.433073; ----skACGTGCg--- ; cor=; Ncor= a 0 0 0 0 48.0 13.0 583.0 5.0 3.0 1.0 3.0 44.0 100.0 0 0 0 c 0 0 0 0 255.0 43.0 16.0 626.0 6.0 15.0 1.0 545.0 115.0 0 0 0 g 0 0 0 0 323.0 174.0 36.0 2.0 629.0 4.0 635.0 23.0 352.0 0 0 0 t 0 0 0 0 14.0 410.0 5.0 7.0 2.0 620.0 1.0 28.0 73.0 0 0 0

MA0664.2_shift3 (MLXIPL)
; positions_7nt_m5 versus MA0664.2 (MLXIPL); m=11/18; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.431753; ---rtCACGTG----- ; cor=; Ncor= a 0 0 0 345.0 126.0 0.0 411.0 2.0 20.0 0.0 0.0 0 0 0 0 0 c 0 0 0 31.0 28.0 448.0 0.0 452.0 2.0 0.0 0.0 0 0 0 0 0 g 0 0 0 220.0 133.0 11.0 2.0 12.0 735.0 3.0 727.0 0 0 0 0 0 t 0 0 0 113.0 468.0 0.0 5.0 0.0 0.0 562.0 0.0 0 0 0 0 0

MA1631.2_shift4 (ASCL1)
; positions_7nt_m5 versus MA1631.2 (ASCL1); m=12/18; ncol2=9; w=0; offset=4; strand=D; shift=4; score=0.42429; ----gCACCTGCy--- ; cor=; Ncor= a 0 0 0 0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 0 0 0 c 0 0 0 0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 0 0 0 g 0 0 0 0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 0 0 0 t 0 0 0 0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 0 0 0

MA1945.2_rc_shift5 (ETV5::FIGLA_rc)
; positions_7nt_m5 versus MA1945.2_rc (ETV5::FIGLA_rc); m=13/18; ncol2=14; w=0; offset=5; strand=R; shift=5; score=0.423732; -----CACCTGyTTCC ; cor=; Ncor= a 0 0 0 0 0 34.0 1839.0 5.0 10.0 3.0 24.0 35.0 598.0 24.0 98.0 5.0 c 0 0 0 0 0 1839.0 40.0 1839.0 1839.0 26.0 20.0 1139.0 56.0 25.0 1839.0 1839.0 g 0 0 0 0 0 12.0 12.0 477.0 377.0 10.0 1839.0 177.0 47.0 41.0 3.0 4.0 t 0 0 0 0 0 15.0 18.0 64.0 15.0 1839.0 7.0 700.0 1839.0 1839.0 0.0 12.0

MA0626.2_shift4 (Npas2)
; positions_7nt_m5 versus MA0626.2 (Npas2); m=14/18; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.420876; ----sCACGTGt---- ; cor=; Ncor= a 0 0 0 0 154.0 0.0 999.0 81.0 81.0 0.0 81.0 74.0 0 0 0 0 c 0 0 0 0 377.0 999.0 0.0 918.0 0.0 0.0 0.0 172.0 0 0 0 0 g 0 0 0 0 420.0 0.0 0.0 0.0 918.0 0.0 918.0 188.0 0 0 0 0 t 0 0 0 0 48.0 0.0 0.0 0.0 0.0 999.0 0.0 566.0 0 0 0 0

MA1099.3_shift3 (HES1)
; positions_7nt_m5 versus MA1099.3 (HES1); m=15/18; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.417178; ---ggCrCGTG----- ; cor=; Ncor= a 0 0 0 3321.0 5858.0 464.0 9446.0 0.0 21.0 253.0 1.0 0 0 0 0 0 c 0 0 0 3492.0 2072.0 18526.0 0.0 18526.0 0.0 4057.0 0.0 0 0 0 0 0 g 0 0 0 18526.0 18526.0 0.0 9081.0 0.0 18526.0 0.0 18526.0 0 0 0 0 0 t 0 0 0 4239.0 8007.0 18.0 232.0 791.0 0.0 18526.0 53.0 0 0 0 0 0

MA0147.4_rc_shift4 (MYC_rc)
; positions_7nt_m5 versus MA0147.4_rc (MYC_rc); m=16/18; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.414379; ----gCACGTGG---- ; cor=; Ncor= a 0 0 0 0 524.0 46.0 4658.0 38.0 293.0 113.0 27.0 286.0 0 0 0 0 c 0 0 0 0 1198.0 4817.0 63.0 4578.0 70.0 170.0 31.0 472.0 0 0 0 0 g 0 0 0 0 2801.0 56.0 162.0 157.0 4525.0 59.0 4840.0 3746.0 0 0 0 0 t 0 0 0 0 419.0 23.0 59.0 169.0 54.0 4600.0 44.0 438.0 0 0 0 0

MA1464.2_shift3 (ARNT2)
; positions_7nt_m5 versus MA1464.2 (ARNT2); m=17/18; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.406626; ---rtCACGTG----- ; cor=; Ncor= a 0 0 0 11781.0 9572.0 505.0 40622.0 0.0 84.0 651.0 14.0 0 0 0 0 0 c 0 0 0 4265.0 4901.0 40622.0 122.0 40622.0 0.0 932.0 0.0 0 0 0 0 0 g 0 0 0 28841.0 9525.0 115.0 532.0 0.0 40622.0 111.0 40622.0 0 0 0 0 0 t 0 0 0 1951.0 40622.0 0.0 460.0 148.0 0.0 40622.0 971.0 0 0 0 0 0

MA0692.2_shift5 (TFEB)
; positions_7nt_m5 versus MA0692.2 (TFEB); m=18/18; ncol2=8; w=0; offset=5; strand=D; shift=5; score=0.402782; -----CACGTGAy--- ; cor=; Ncor= a 0 0 0 0 0 17.0 8715.0 0.0 2762.0 454.0 9.0 8715.0 283.0 0 0 0 c 0 0 0 0 0 8715.0 286.0 8715.0 288.0 169.0 10.0 2342.0 5889.0 0 0 0 g 0 0 0 0 0 0.0 62.0 83.0 8715.0 150.0 8715.0 872.0 558.0 0 0 0 t 0 0 0 0 0 3.0 274.0 1155.0 5.0 8715.0 11.0 807.0 2826.0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m5_shift0 (positions_7nt_m5)				; positions_7nt_m5; m=0 (reference); ncol1=16; shift=0; ncol=16; rhaaGCACGTGCttdy ; Alignment reference a 147 135 352 346 32 24 422 60 55 14 48 26 53 60 147 116 c 111 133 34 75 26 429 25 393 19 59 22 438 49 75 108 149 g 150 107 78 49 438 22 63 17 389 25 429 26 75 34 133 112 t 115 148 59 53 27 48 13 53 60 425 24 33 346 354 135 146
MA0059.2_rc_shift3 (MAX::MYC_rc)				; positions_7nt_m5 versus MA0059.2_rc (MAX::MYC_rc); m=1/18; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.498524; ---aCCACGTGsT--- ; cor=; Ncor= a 0 0 0 13.0 1.0 0.0 20.0 0.0 1.0 0.0 0.0 1.0 1.0 0 0 0 c 0 0 0 0.0 18.0 21.0 0.0 20.0 0.0 0.0 0.0 9.0 4.0 0 0 0 g 0 0 0 5.0 1.0 0.0 1.0 0.0 20.0 0.0 20.0 9.0 1.0 0 0 0 t 0 0 0 3.0 1.0 0.0 0.0 1.0 0.0 21.0 1.0 2.0 15.0 0 0 0
MA0821.2_rc_shift3 (HES5_rc)				; positions_7nt_m5 versus MA0821.2_rc (HES5_rc); m=2/18; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.495112; ---grCACGTGyc--- ; cor=; Ncor= a 0 0 0 2389.0 4524.0 231.0 9045.0 68.0 472.0 146.0 74.0 358.0 1455.0 0 0 0 c 0 0 0 2240.0 2606.0 10849.0 199.0 10849.0 193.0 1812.0 113.0 6320.0 8459.0 0 0 0 g 0 0 0 8460.0 6325.0 121.0 1804.0 164.0 10849.0 204.0 10849.0 2601.0 2209.0 0 0 0 t 0 0 0 1439.0 339.0 66.0 159.0 467.0 49.0 9037.0 212.0 4529.0 2390.0 0 0 0
MA0823.1_rc_shift3 (HEY1_rc)				; positions_7nt_m5 versus MA0823.1_rc (HEY1_rc); m=3/18; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.485491; ---grCACGTGyc--- ; cor=; Ncor= a 0 0 0 318.0 863.0 22.0 3338.0 0.0 0.0 21.0 15.0 110.0 352.0 0 0 0 c 0 0 0 373.0 380.0 3338.0 10.0 3338.0 0.0 123.0 3.0 1199.0 1788.0 0 0 0 g 0 0 0 2172.0 1762.0 19.0 474.0 18.0 3338.0 30.0 3338.0 656.0 761.0 0 0 0 t 0 0 0 475.0 333.0 32.0 0.0 0.0 0.0 3338.0 1.0 1373.0 437.0 0 0 0
MA1560.2_rc_shift4 (SOHLH2_rc)				; positions_7nt_m5 versus MA1560.2_rc (SOHLH2_rc); m=4/18; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.482496; ----gCACGTGc---- ; cor=; Ncor= a 0 0 0 0 153.0 4.0 1212.0 15.0 7.0 0.0 70.0 276.0 0 0 0 0 c 0 0 0 0 172.0 1212.0 0.0 1212.0 11.0 41.0 29.0 1212.0 0 0 0 0 g 0 0 0 0 1212.0 4.0 65.0 0.0 1212.0 0.0 1212.0 264.0 0 0 0 0 t 0 0 0 0 272.0 41.0 36.0 14.0 0.0 1212.0 45.0 172.0 0 0 0 0
MA0616.3_shift3 (HES2)				; positions_7nt_m5 versus MA0616.3 (HES2); m=5/18; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.471853; ---GgCACGTGy---- ; cor=; Ncor= a 0 0 0 775.0 1501.0 118.0 6455.0 0.0 0.0 0.0 53.0 512.0 0 0 0 0 c 0 0 0 1193.0 1107.0 8483.0 0.0 8483.0 0.0 1098.0 15.0 4634.0 0 0 0 0 g 0 0 0 8483.0 8483.0 85.0 2028.0 0.0 8483.0 0.0 8483.0 1289.0 0 0 0 0 t 0 0 0 798.0 1581.0 73.0 0.0 129.0 0.0 8483.0 0.0 3849.0 0 0 0 0
MA1493.1_shift3 (HES6)				; positions_7nt_m5 versus MA1493.1 (HES6); m=6/18; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.456436; ---GGCACGTGTy--- ; cor=; Ncor= a 0 0 0 12.0 16.0 17.0 439.0 2.0 10.0 0.0 0.0 33.0 79.0 0 0 0 c 0 0 0 39.0 35.0 439.0 0.0 439.0 12.0 7.0 0.0 21.0 152.0 0 0 0 g 0 0 0 439.0 439.0 19.0 9.0 9.0 439.0 29.0 439.0 0.0 0.0 0 0 0 t 0 0 0 43.0 13.0 15.0 11.0 16.0 0.0 439.0 0.0 439.0 209.0 0 0 0
MA0663.1_shift3 (MLX)				; positions_7nt_m5 versus MA0663.1 (MLX); m=7/18; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.451798; ---rTCACGTGAt--- ; cor=; Ncor= a 0 0 0 177.0 0.0 3.0 234.0 0.0 1.0 2.0 2.0 240.0 23.0 0 0 0 c 0 0 0 4.0 17.0 251.0 0.0 257.0 0.0 1.0 0.0 9.0 84.0 0 0 0 g 0 0 0 110.0 61.0 3.0 6.0 0.0 558.0 1.0 555.0 35.0 6.0 0 0 0 t 0 0 0 41.0 322.0 4.0 0.0 0.0 1.0 315.0 5.0 16.0 235.0 0 0 0
MA0649.2_shift3 (HEY2)				; positions_7nt_m5 versus MA0649.2 (HEY2); m=8/18; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.445215; ---GrCACGTGy---- ; cor=; Ncor= a 0 0 0 107.0 651.0 84.0 1800.0 7.0 27.0 36.0 0.0 50.0 0 0 0 0 c 0 0 0 99.0 305.0 1800.0 0.0 1800.0 72.0 120.0 34.0 1047.0 0 0 0 0 g 0 0 0 1800.0 620.0 83.0 128.0 0.0 1800.0 0.0 1800.0 128.0 0 0 0 0 t 0 0 0 101.0 224.0 58.0 0.0 0.0 0.0 1800.0 30.0 753.0 0 0 0 0
MA0464.3_rc_shift4 (BHLHE40_rc)				; positions_7nt_m5 versus MA0464.3_rc (BHLHE40_rc); m=9/18; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.438984; ----kCACGTGm---- ; cor=; Ncor= a 0 0 0 0 500.0 72.0 11222.0 0.0 32.0 77.0 14.0 6222.0 0 0 0 0 c 0 0 0 0 129.0 11222.0 87.0 11222.0 2.0 78.0 0.0 5000.0 0 0 0 0 g 0 0 0 0 5295.0 12.0 248.0 30.0 11222.0 130.0 11222.0 481.0 0 0 0 0 t 0 0 0 0 5927.0 4.0 167.0 66.0 23.0 11222.0 59.0 1391.0 0 0 0 0
MA2325.1_rc_shift4 (EPAS1_rc)				; positions_7nt_m5 versus MA2325.1_rc (EPAS1_rc); m=10/18; ncol2=9; w=0; offset=4; strand=R; shift=4; score=0.433073; ----skACGTGCg--- ; cor=; Ncor= a 0 0 0 0 48.0 13.0 583.0 5.0 3.0 1.0 3.0 44.0 100.0 0 0 0 c 0 0 0 0 255.0 43.0 16.0 626.0 6.0 15.0 1.0 545.0 115.0 0 0 0 g 0 0 0 0 323.0 174.0 36.0 2.0 629.0 4.0 635.0 23.0 352.0 0 0 0 t 0 0 0 0 14.0 410.0 5.0 7.0 2.0 620.0 1.0 28.0 73.0 0 0 0
MA0664.2_shift3 (MLXIPL)				; positions_7nt_m5 versus MA0664.2 (MLXIPL); m=11/18; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.431753; ---rtCACGTG----- ; cor=; Ncor= a 0 0 0 345.0 126.0 0.0 411.0 2.0 20.0 0.0 0.0 0 0 0 0 0 c 0 0 0 31.0 28.0 448.0 0.0 452.0 2.0 0.0 0.0 0 0 0 0 0 g 0 0 0 220.0 133.0 11.0 2.0 12.0 735.0 3.0 727.0 0 0 0 0 0 t 0 0 0 113.0 468.0 0.0 5.0 0.0 0.0 562.0 0.0 0 0 0 0 0
MA1631.2_shift4 (ASCL1)				; positions_7nt_m5 versus MA1631.2 (ASCL1); m=12/18; ncol2=9; w=0; offset=4; strand=D; shift=4; score=0.42429; ----gCACCTGCy--- ; cor=; Ncor= a 0 0 0 0 5836.0 184.0 32315.0 163.0 196.0 368.0 251.0 399.0 4490.0 0 0 0 c 0 0 0 0 6654.0 33562.0 563.0 30169.0 33402.0 740.0 445.0 28844.0 17883.0 0 0 0 g 0 0 0 0 18576.0 321.0 860.0 3209.0 607.0 492.0 33411.0 2719.0 2966.0 0 0 0 t 0 0 0 0 3290.0 289.0 618.0 815.0 151.0 32756.0 249.0 2394.0 9017.0 0 0 0
MA1945.2_rc_shift5 (ETV5::FIGLA_rc)				; positions_7nt_m5 versus MA1945.2_rc (ETV5::FIGLA_rc); m=13/18; ncol2=14; w=0; offset=5; strand=R; shift=5; score=0.423732; -----CACCTGyTTCC ; cor=; Ncor= a 0 0 0 0 0 34.0 1839.0 5.0 10.0 3.0 24.0 35.0 598.0 24.0 98.0 5.0 c 0 0 0 0 0 1839.0 40.0 1839.0 1839.0 26.0 20.0 1139.0 56.0 25.0 1839.0 1839.0 g 0 0 0 0 0 12.0 12.0 477.0 377.0 10.0 1839.0 177.0 47.0 41.0 3.0 4.0 t 0 0 0 0 0 15.0 18.0 64.0 15.0 1839.0 7.0 700.0 1839.0 1839.0 0.0 12.0
MA0626.2_shift4 (Npas2)				; positions_7nt_m5 versus MA0626.2 (Npas2); m=14/18; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.420876; ----sCACGTGt---- ; cor=; Ncor= a 0 0 0 0 154.0 0.0 999.0 81.0 81.0 0.0 81.0 74.0 0 0 0 0 c 0 0 0 0 377.0 999.0 0.0 918.0 0.0 0.0 0.0 172.0 0 0 0 0 g 0 0 0 0 420.0 0.0 0.0 0.0 918.0 0.0 918.0 188.0 0 0 0 0 t 0 0 0 0 48.0 0.0 0.0 0.0 0.0 999.0 0.0 566.0 0 0 0 0
MA1099.3_shift3 (HES1)				; positions_7nt_m5 versus MA1099.3 (HES1); m=15/18; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.417178; ---ggCrCGTG----- ; cor=; Ncor= a 0 0 0 3321.0 5858.0 464.0 9446.0 0.0 21.0 253.0 1.0 0 0 0 0 0 c 0 0 0 3492.0 2072.0 18526.0 0.0 18526.0 0.0 4057.0 0.0 0 0 0 0 0 g 0 0 0 18526.0 18526.0 0.0 9081.0 0.0 18526.0 0.0 18526.0 0 0 0 0 0 t 0 0 0 4239.0 8007.0 18.0 232.0 791.0 0.0 18526.0 53.0 0 0 0 0 0
MA0147.4_rc_shift4 (MYC_rc)				; positions_7nt_m5 versus MA0147.4_rc (MYC_rc); m=16/18; ncol2=8; w=0; offset=4; strand=R; shift=4; score=0.414379; ----gCACGTGG---- ; cor=; Ncor= a 0 0 0 0 524.0 46.0 4658.0 38.0 293.0 113.0 27.0 286.0 0 0 0 0 c 0 0 0 0 1198.0 4817.0 63.0 4578.0 70.0 170.0 31.0 472.0 0 0 0 0 g 0 0 0 0 2801.0 56.0 162.0 157.0 4525.0 59.0 4840.0 3746.0 0 0 0 0 t 0 0 0 0 419.0 23.0 59.0 169.0 54.0 4600.0 44.0 438.0 0 0 0 0
MA1464.2_shift3 (ARNT2)				; positions_7nt_m5 versus MA1464.2 (ARNT2); m=17/18; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.406626; ---rtCACGTG----- ; cor=; Ncor= a 0 0 0 11781.0 9572.0 505.0 40622.0 0.0 84.0 651.0 14.0 0 0 0 0 0 c 0 0 0 4265.0 4901.0 40622.0 122.0 40622.0 0.0 932.0 0.0 0 0 0 0 0 g 0 0 0 28841.0 9525.0 115.0 532.0 0.0 40622.0 111.0 40622.0 0 0 0 0 0 t 0 0 0 1951.0 40622.0 0.0 460.0 148.0 0.0 40622.0 971.0 0 0 0 0 0
MA0692.2_shift5 (TFEB)				; positions_7nt_m5 versus MA0692.2 (TFEB); m=18/18; ncol2=8; w=0; offset=5; strand=D; shift=5; score=0.402782; -----CACGTGAy--- ; cor=; Ncor= a 0 0 0 0 0 17.0 8715.0 0.0 2762.0 454.0 9.0 8715.0 283.0 0 0 0 c 0 0 0 0 0 8715.0 286.0 8715.0 288.0 169.0 10.0 2342.0 5889.0 0 0 0 g 0 0 0 0 0 0.0 62.0 83.0 8715.0 150.0 8715.0 872.0 558.0 0 0 0 t 0 0 0 0 0 3.0 274.0 1155.0 5.0 8715.0 11.0 807.0 2826.0 0 0 0