position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.161703_2025-11-25.161703_rLQi2W/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title Title -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.161703_2025-11-25.161703_rLQi2W/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.161703_2025-11-25.161703_rLQi2W/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.161703_2025-11-25.161703_rLQi2W/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 1 Sum of sequence lengths 273 Min sequence length 0 Max sequence length 273 Average sequence length 273 Possible positions 273 Sequences: # length ID 1 273 2HYY_1|Chains Oligonucleotide statistics: Total occurrences 54 Position interval parameters: Position interval 20 Number of windows 14 Total positions 273 Degrees of freedom 13 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -7 [-139,-120] -129.5 1 17 2 -6 [-119,-100] -109.5 1 20 3 -5 [-99,-80] -89.5 1 20 4 -4 [-79,-60] -69.5 1 20 5 -3 [-59,-40] -49.5 1 20 6 -2 [-39,-20] -29.5 1 20 7 -1 [-19,0] -9.5 1 20 8 0 [1,20] 10.5 1 20 9 1 [21,40] 30.5 1 20 10 2 [41,60] 50.5 1 20 11 3 [61,80] 70.5 1 20 12 4 [81,100] 90.5 1 20 13 5 [101,120] 110.5 1 20 14 6 [121,140] 130.5 1 16 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -129.5 occurrences in window 1 [-139,-120] 11 -109.5 occurrences in window 2 [-119,-100] 12 -89.5 occurrences in window 3 [-99,-80] 13 -69.5 occurrences in window 4 [-79,-60] 14 -49.5 occurrences in window 5 [-59,-40] 15 -29.5 occurrences in window 6 [-39,-20] 16 -9.5 occurrences in window 7 [-19,0] 17 10.5 occurrences in window 8 [1,20] 18 30.5 occurrences in window 9 [21,40] 19 50.5 occurrences in window 10 [41,60] 20 70.5 occurrences in window 11 [61,80] 21 90.5 occurrences in window 12 [81,100] 22 110.5 occurrences in window 13 [101,120] 23 130.5 occurrences in window 14 [121,140]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 15 | 0.0 | 13 | 1.0e+00 | 4 | -0.60 | 1 | 0 | 5 | 0 | 1 | 1 | 0 | 0 | 2 | 2 | 0 | 3 | 1 | 0 | 0 |
| c | c | 5 | 0.0 | 13 | 1.0e+00 | 4 | -0.60 | 2 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 0 |
| t | t | 15 | 0.0 | 13 | 1.0e+00 | 4 | -0.60 | 3 | 2 | 0 | 3 | 0 | 3 | 0 | 1 | 0 | 3 | 1 | 1 | 0 | 0 | 1 |
| a | a | 19 | 0.0 | 13 | 1.0e+00 | 4 | -0.60 | 4 | 0 | 0 | 1 | 2 | 0 | 2 | 1 | 3 | 3 | 3 | 1 | 0 | 1 | 2 |
Host name rsat Job started 2025-11-25.161705 Job done 2025-11-25.161705 Seconds 0.11 user 0.11 system 0.01 cuser 0 ; csystem 0