# RSAT - compare-matrices result

### Analysis: result (25/11/2025 16:41)

`Command: compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.163900_2025-11-25.163900_NWtK8i/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.163900_2025-11-25.163900_NWtK8i/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab`

## Input files

Type | File
--- | ---
file1 | peak-motifs_motifs_discovered.tf
file2 | peak-motifs_motifs_discovered.tf

## Output files

Type | File
--- | ---
match_table_txt | peak-motifs_motifs_disco_compa.tab
match_table_html | peak-motifs_motifs_disco_compa.html
alignments_1ton | peak-motifs_motifs_disco_compa_alignments_1ton.tab
alignments_1ton_html | peak-motifs_motifs_disco_compa_alignments_1ton.html

## Directories

Type | Directory
--- | ---
output | .
aligned_logos | peak-motifs_motifs_disco_compa_aligned_logos