position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.163900_2025-11-25.163900_NWtK8i/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title flag -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.163900_2025-11-25.163900_NWtK8i/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.163900_2025-11-25.163900_NWtK8i/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.163900_2025-11-25.163900_NWtK8i/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 9885 Sum of sequence lengths 2914197 Min sequence length 0 Max sequence length 1000 Average sequence length 294 Possible positions 2914197 Oligonucleotide statistics: Total occurrences 2620526 Position interval parameters: Position interval 20 Number of windows 50 Total positions 2914197 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 254 4846 2 -24 [-479,-460] -469.5 283 5429 3 -23 [-459,-440] -449.5 311 5938 4 -22 [-439,-420] -429.5 368 6832 5 -21 [-419,-400] -409.5 415 7928 6 -20 [-399,-380] -389.5 456 8716 7 -19 [-379,-360] -369.5 517 9702 8 -18 [-359,-340] -349.5 606 11218 9 -17 [-339,-320] -329.5 712 13191 10 -16 [-319,-300] -309.5 810 15300 11 -15 [-299,-280] -289.5 948 17611 12 -14 [-279,-260] -269.5 1124 20654 13 -13 [-259,-240] -249.5 1346 24694 14 -12 [-239,-220] -229.5 1584 29536 15 -11 [-219,-200] -209.5 1850 34509 16 -10 [-199,-180] -189.5 2242 40948 17 -9 [-179,-160] -169.5 2841 50933 18 -8 [-159,-140] -149.5 3518 64225 19 -7 [-139,-120] -129.5 4128 76620 20 -6 [-119,-100] -109.5 5377 94162 21 -5 [-99,-80] -89.5 8158 134082 22 -4 [-79,-60] -69.5 9885 191777 23 -3 [-59,-40] -49.5 9885 197700 24 -2 [-39,-20] -29.5 9885 197700 25 -1 [-19,0] -9.5 9885 197700 26 0 [1,20] 10.5 9885 197700 27 1 [21,40] 30.5 9885 197700 28 2 [41,60] 50.5 9885 197700 29 3 [61,80] 70.5 9885 190068 30 4 [81,100] 90.5 7971 131306 31 5 [101,120] 110.5 5283 92886 32 6 [121,140] 130.5 4098 76021 33 7 [141,160] 150.5 3494 63540 34 8 [161,180] 170.5 2811 50316 35 9 [181,200] 190.5 2213 40568 36 10 [201,220] 210.5 1834 34223 37 11 [221,240] 230.5 1573 29297 38 12 [241,260] 250.5 1334 24465 39 13 [261,280] 270.5 1110 20473 40 14 [281,300] 290.5 944 17464 41 15 [301,320] 310.5 804 15202 42 16 [321,340] 330.5 707 13093 43 17 [341,360] 350.5 596 11123 44 18 [361,380] 370.5 516 9644 45 19 [381,400] 390.5 453 8675 46 20 [401,420] 410.5 414 7880 47 21 [421,440] 430.5 367 6775 48 22 [441,460] 450.5 310 5912 49 23 [461,480] 470.5 282 5400 50 24 [481,500] 490.5 253 4815 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 629290 | 1412.1 | 49 | 0.0e+00 | 0 | 300 | 1 | 947 | 1033 | 1151 | 1299 | 1442 | 1660 | 1941 | 2227 | 2663 | 3067 | 3533 | 4210 | 5107 | 6237 | 7180 | 8718 | 10946 | 13970 | 16455 | 21137 | 31438 | 45121 | 43412 | 43276 | 42823 | 42926 | 43067 | 42696 | 41091 | 28548 | 19850 | 16250 | 13328 | 10523 | 8374 | 6906 | 5931 | 4781 | 4041 | 3443 | 2929 | 2453 | 2059 | 1795 | 1599 | 1435 | 1239 | 1093 | 974 | 966 |
| c | c | 629567 | 1263.4 | 49 | 0.0e+00 | 0 | 300 | 2 | 968 | 1107 | 1127 | 1210 | 1602 | 1686 | 1843 | 2136 | 2607 | 2932 | 3438 | 4149 | 4941 | 5893 | 6899 | 8290 | 10625 | 13427 | 16257 | 20256 | 29247 | 41212 | 43210 | 43003 | 42876 | 42952 | 43059 | 43905 | 44385 | 30661 | 20609 | 16458 | 13686 | 10983 | 8594 | 7219 | 6071 | 5084 | 4277 | 3460 | 3125 | 2659 | 2234 | 1847 | 1599 | 1503 | 1277 | 1034 | 1029 | 916 |
| a | a | 680467 | 885.4 | 49 | 0.0e+00 | 0 | 300 | 3 | 1146 | 1309 | 1346 | 1599 | 1733 | 2022 | 2233 | 2653 | 3154 | 3565 | 4092 | 4707 | 5596 | 6805 | 7992 | 9452 | 11839 | 15083 | 17920 | 21664 | 31173 | 46309 | 48087 | 47756 | 47872 | 47371 | 47205 | 46819 | 43178 | 29322 | 21200 | 17481 | 14481 | 11335 | 8957 | 7590 | 6552 | 5441 | 4388 | 3732 | 3258 | 2713 | 2273 | 1988 | 1802 | 1590 | 1397 | 1203 | 1078 | 1006 |
| t | t | 681202 | 614.8 | 49 | 0.0e+00 | 0 | 300 | 4 | 1149 | 1146 | 1340 | 1516 | 1822 | 2024 | 2216 | 2562 | 2934 | 3556 | 4018 | 4713 | 5742 | 6744 | 8067 | 9315 | 11504 | 14747 | 17919 | 21689 | 30224 | 43576 | 46361 | 46989 | 47482 | 47623 | 47467 | 47513 | 45912 | 30636 | 21633 | 17635 | 14984 | 11509 | 9537 | 7950 | 6696 | 5574 | 4609 | 3984 | 3302 | 2873 | 2341 | 2045 | 1793 | 1602 | 1305 | 1178 | 1138 | 1008 |
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