/var/www/html/rsat/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.163900_2025-11-25.163900_NWtK8i/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.163900_2025-11-25.163900_NWtK8i/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title flag -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.163900_2025-11-25.163900_NWtK8i/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.163900_2025-11-25.163900_NWtK8i/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.163900_2025-11-25.163900_NWtK8i/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	9885
	Sum of sequence lengths      	2914197
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	294
	Possible positions           	2904312
 Oligonucleotide statistics:
	Total occurrences    	2609571
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	2904312
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	254	4846
	2	-24	[-479,-460]	-469.5	283	5429
	3	-23	[-459,-440]	-449.5	311	5938
	4	-22	[-439,-420]	-429.5	368	6832
	5	-21	[-419,-400]	-409.5	415	7928
	6	-20	[-399,-380]	-389.5	456	8716
	7	-19	[-379,-360]	-369.5	517	9702
	8	-18	[-359,-340]	-349.5	606	11218
	9	-17	[-339,-320]	-329.5	712	13191
	10	-16	[-319,-300]	-309.5	810	15300
	11	-15	[-299,-280]	-289.5	948	17611
	12	-14	[-279,-260]	-269.5	1124	20654
	13	-13	[-259,-240]	-249.5	1346	24694
	14	-12	[-239,-220]	-229.5	1584	29536
	15	-11	[-219,-200]	-209.5	1850	34509
	16	-10	[-199,-180]	-189.5	2242	40948
	17	-9	[-179,-160]	-169.5	2841	50933
	18	-8	[-159,-140]	-149.5	3518	64225
	19	-7	[-139,-120]	-129.5	4128	76620
	20	-6	[-119,-100]	-109.5	5377	94162
	21	-5	[-99,-80]	-89.5	8158	134082
	22	-4	[-79,-60]	-69.5	9885	191777
	23	-3	[-59,-40]	-49.5	9885	197700
	24	-2	[-39,-20]	-29.5	9885	197700
	25	-1	[-19,0]	-9.5	9885	197700
	26	0	[1,20]	10.5	9885	197700
	27	1	[21,40]	30.5	9885	197700
	28	2	[41,60]	50.5	9885	197700
	29	3	[61,80]	70.5	9885	188154
	30	4	[81,100]	90.5	7869	128618
	31	5	[101,120]	110.5	5239	91701
	32	6	[121,140]	130.5	4083	75417
	33	7	[141,160]	150.5	3481	62857
	34	8	[161,180]	170.5	2794	49718
	35	9	[181,200]	190.5	2198	40189
	36	10	[201,220]	210.5	1829	33962
	37	11	[221,240]	230.5	1567	29058
	38	12	[241,260]	250.5	1329	24241
	39	13	[261,280]	270.5	1109	20307
	40	14	[281,300]	290.5	939	17324
	41	15	[301,320]	310.5	802	15105
	42	16	[321,340]	330.5	706	12982
	43	17	[341,360]	350.5	592	11043
	44	18	[361,380]	370.5	515	9581
	45	19	[381,400]	390.5	453	8636
	46	20	[401,420]	410.5	413	7833
	47	21	[421,440]	430.5	367	6718
	48	22	[441,460]	450.5	310	5884
	49	23	[461,480]	470.5	282	5371
	50	24	[481,500]	490.5	253	4562

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
aa aa 205801 930.2 49 0.0e+00 0 300 1 357 445 446 541 538 648 668 847 1017 1106 1273 1427 1722 2067 2562 2907 3668 4552 5467 6435 9155 14395 15368 14940 14922 14413 14431 14391 12074 7817 6228 5145 4363 3283 2630 2253 1946 1532 1277 1123 933 754 677 614 579 467 436 373 302 287
gg gg 187143 897.4 49 0.0e+00 0 300 2 263 289 326 365 371 485 531 656 742 920 995 1247 1540 1809 2116 2638 3286 4194 4936 6619 9924 13911 13039 13015 12546 12513 12707 12566 12023 8494 5848 4860 3957 3040 2425 1990 1699 1366 1164 1008 847 663 594 507 463 427 343 325 266 285
cc cc 187064 783.0 49 0.0e+00 0 300 3 249 318 311 282 477 483 487 594 743 820 1005 1189 1437 1709 2012 2438 3131 3960 4735 5931 8853 12041 12942 12700 12416 12762 12781 13366 13483 9464 6170 4901 4075 3300 2517 2112 1833 1521 1348 1025 925 791 672 562 492 469 388 307 294 243
tt tt 206334 603.8 49 0.0e+00 0 300 4 360 333 417 482 585 640 681 782 833 1104 1241 1460 1749 2044 2567 2887 3399 4454 5402 6349 8308 12483 14041 14428 14550 14774 14865 14877 14026 8973 6338 5365 4572 3395 2993 2440 2071 1742 1413 1249 994 910 697 636 575 504 366 361 335 284
ct ct 200549 558.2 49 0.0e+00 0 300 5 307 326 357 399 532 545 623 723 836 961 1101 1343 1568 1851 2182 2572 3316 4195 5161 6376 9072 12955 13626 13804 13955 13711 13719 13952 14348 9804 6562 5247 4429 3488 2823 2403 1944 1616 1319 1113 964 849 729 575 469 443 385 324 351 296
ag ag 200602 544.9 49 0.0e+00 0 300 6 304 354 351 420 471 554 648 754 887 998 1204 1341 1639 2013 2292 2827 3574 4530 5264 6697 10263 14508 13976 13825 13802 13929 13814 13647 12651 8724 6065 5055 4165 3286 2579 2204 1923 1566 1233 1045 914 826 635 574 471 465 416 339 303 277
ta ta 117548 415.7 49 0.0e+00 0 300 7 198 224 233 276 332 390 404 508 560 666 746 851 1029 1226 1397 1659 2079 2586 3160 3694 4829 7365 8293 8304 8723 8509 8400 8123 7045 4655 3624 3126 2487 1855 1640 1460 1134 1014 816 699 589 513 386 361 309 262 245 208 198 158
ga ga 164739 355.5 49 4.4e-48 7e-47 46.15 8 247 279 304 351 385 450 548 609 745 848 955 1089 1284 1637 1901 2278 2830 3643 4192 5255 7799 11854 11368 11554 11368 11540 11444 11343 10566 7598 5100 4182 3448 2755 2167 1738 1608 1286 1017 851 770 628 526 449 419 389 328 303 277 234
at at 140667 343.6 49 7.4e-46 1.2e-44 43.93 9 264 257 304 351 392 457 502 552 663 816 872 1019 1248 1470 1715 1974 2410 3166 3732 4348 5934 8814 9772 10145 10053 10068 9979 9965 8652 5657 4306 3618 2944 2387 1940 1598 1369 1214 954 810 723 551 493 441 403 347 296 258 261 203
gc gc 147077 296.3 49 4.4e-37 7.1e-36 35.15 10 226 244 259 299 373 359 446 488 578 648 811 963 1180 1436 1592 2000 2591 3210 3827 4909 7258 10243 10135 9997 9917 9917 9984 10082 9963 6817 4704 3830 3096 2561 2046 1713 1413 1141 982 805 703 628 512 474 373 321 320 241 236 226
tc tc 165373 280.8 49 2.9e-34 4.6e-33 32.34 11 289 282 322 358 423 486 503 569 708 834 931 1103 1347 1591 1860 2197 2812 3512 4349 5470 7757 10715 11212 11390 11377 11397 11306 11748 11561 7627 5296 4151 3618 2816 2253 1909 1576 1313 1055 899 826 681 581 463 402 399 325 264 281 229
tg tg 187145 271.4 49 1.4e-32 2.3e-31 30.64 12 300 304 367 399 480 505 627 703 830 946 1100 1294 1613 1881 2235 2561 3205 4185 4996 6161 9313 12983 12793 12844 12797 12919 12869 12740 12377 8112 5834 4747 3995 3161 2483 2034 1804 1409 1250 1066 845 713 640 555 491 416 346 334 312 271
ac ac 129083 242.6 49 1.9e-27 3.1e-26 25.51 13 216 253 241 285 331 363 413 500 580 639 743 913 983 1248 1417 1734 2178 2822 3445 4167 5796 8550 8952 8816 9072 8929 8946 8795 9012 6019 4107 3420 2745 2156 1653 1421 1219 1037 845 704 649 545 435 337 329 295 226 220 200 182
gt gt 129329 221.7 49 8.3e-24 1.3e-22 21.88 14 209 219 261 281 312 363 416 473 593 646 767 908 1100 1350 1561 1797 2235 2910 3489 4334 6416 9084 8847 8682 8969 8924 8909 8678 8408 5503 4128 3323 2777 2125 1715 1446 1193 967 874 769 606 528 423 354 340 290 242 224 193 168
cg cg 53550 217.5 49 4.2e-23 6.8e-22 21.17 15 77 100 112 113 114 143 140 135 206 223 252 348 388 506 623 755 972 1140 1406 1909 2640 3714 3592 3607 3628 3584 3603 3692 3591 2601 1848 1410 1102 886 776 597 485 414 343 280 286 220 180 152 151 129 120 88 92 77
ca ca 187567 215.6 49 9.0e-23 1.4e-21 20.84 16 334 362 346 413 479 512 592 682 820 928 1079 1264 1540 1825 2077 2518 3196 4120 4942 6023 8661 12469 13029 12863 12848 12871 12935 12879 12875 8679 5963 4856 4035 3279 2450 2087 1792 1524 1260 1033 942 789 652 554 484 459 381 314 292 260 
 Host name	rsat
 Job started	2025-11-25.163933
 Job done	2025-11-25.163949
 Seconds	16.05
	user	16.06
	system	0.01
	cuser	0
;	csystem	0