position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title Title -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 16608 Sum of sequence lengths 4999662 Min sequence length 0 Max sequence length 1000 Average sequence length 301 Possible positions 4999662 Oligonucleotide statistics: Total occurrences 4469406 Position interval parameters: Position interval 20 Number of windows 50 Total positions 4999662 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 418 7902 2 -24 [-479,-460] -469.5 459 8768 3 -23 [-459,-440] -449.5 532 9889 4 -22 [-439,-420] -429.5 608 11391 5 -21 [-419,-400] -409.5 686 13082 6 -20 [-399,-380] -389.5 780 14713 7 -19 [-379,-360] -369.5 907 16903 8 -18 [-359,-340] -349.5 1035 19436 9 -17 [-339,-320] -329.5 1212 22559 10 -16 [-319,-300] -309.5 1405 26363 11 -15 [-299,-280] -289.5 1633 30373 12 -14 [-279,-260] -269.5 1936 35864 13 -13 [-259,-240] -249.5 2318 42796 14 -12 [-239,-220] -229.5 2760 51010 15 -11 [-219,-200] -209.5 3285 60908 16 -10 [-199,-180] -189.5 3996 72941 17 -9 [-179,-160] -169.5 5015 89930 18 -8 [-159,-140] -149.5 6202 112601 19 -7 [-139,-120] -129.5 7530 137585 20 -6 [-119,-100] -109.5 9567 170418 21 -5 [-99,-80] -89.5 13928 233000 22 -4 [-79,-60] -69.5 16608 322993 23 -3 [-59,-40] -49.5 16608 332160 24 -2 [-39,-20] -29.5 16608 332160 25 -1 [-19,0] -9.5 16608 332160 26 0 [1,20] 10.5 16608 332160 27 1 [21,40] 30.5 16608 332160 28 2 [41,60] 50.5 16608 332160 29 3 [61,80] 70.5 16608 320300 30 4 [81,100] 90.5 13636 228573 31 5 [101,120] 110.5 9414 168426 32 6 [121,140] 130.5 7449 136292 33 7 [141,160] 150.5 6145 111437 34 8 [161,180] 170.5 4947 88887 35 9 [181,200] 190.5 3951 72251 36 10 [201,220] 210.5 3246 60388 37 11 [221,240] 230.5 2740 50598 38 12 [241,260] 250.5 2299 42432 39 13 [261,280] 270.5 1919 35563 40 14 [281,300] 290.5 1613 30128 41 15 [301,320] 310.5 1396 26169 42 16 [321,340] 330.5 1203 22393 43 17 [341,360] 350.5 1031 19329 44 18 [361,380] 370.5 901 16774 45 19 [381,400] 390.5 775 14620 46 20 [401,420] 410.5 680 13001 47 21 [421,440] 430.5 602 11311 48 22 [441,460] 450.5 530 9821 49 23 [461,480] 470.5 455 8728 50 24 [481,500] 490.5 416 7856 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 1135192 | 1707.4 | 49 | 0.0e+00 | 0 | 300 | 1 | 1648 | 1758 | 2016 | 2331 | 2630 | 3024 | 3489 | 4142 | 4720 | 5630 | 6340 | 7924 | 9354 | 11123 | 13490 | 16635 | 20441 | 25751 | 31338 | 40407 | 56699 | 77771 | 76763 | 76182 | 75297 | 75568 | 75697 | 75730 | 72675 | 52393 | 38025 | 30643 | 25274 | 19660 | 15753 | 13198 | 10884 | 8933 | 7339 | 6245 | 5472 | 4565 | 3898 | 3360 | 2954 | 2611 | 2210 | 1892 | 1691 | 1619 |
| c | c | 1136158 | 1560.1 | 49 | 0.0e+00 | 0 | 300 | 2 | 1734 | 1873 | 2117 | 2343 | 2830 | 3073 | 3456 | 4005 | 4800 | 5418 | 6361 | 7439 | 9150 | 11018 | 12998 | 15704 | 19971 | 24900 | 31115 | 38611 | 53711 | 73547 | 75521 | 75452 | 75697 | 75643 | 75918 | 77104 | 77567 | 55218 | 39350 | 31471 | 25543 | 20631 | 16383 | 13295 | 11069 | 9237 | 7655 | 6443 | 5469 | 4649 | 3967 | 3410 | 3001 | 2550 | 2258 | 2013 | 1777 | 1693 |
| a | a | 1098647 | 701.2 | 49 | 0.0e+00 | 0 | 300 | 3 | 1811 | 2077 | 2253 | 2596 | 2878 | 3146 | 3794 | 4231 | 4999 | 5773 | 6720 | 7853 | 9450 | 11016 | 13365 | 15880 | 19699 | 24856 | 30300 | 37161 | 50804 | 72722 | 74912 | 74762 | 74806 | 74595 | 74705 | 73233 | 69134 | 48661 | 35870 | 29337 | 23972 | 19091 | 15379 | 12797 | 10715 | 8937 | 7424 | 6172 | 5434 | 4628 | 3972 | 3445 | 2955 | 2667 | 2296 | 1940 | 1769 | 1655 |
| t | t | 1099409 | 499.4 | 49 | 0.0e+00 | 0 | 300 | 4 | 1792 | 1917 | 2144 | 2556 | 2846 | 3218 | 3672 | 4221 | 4858 | 5724 | 6628 | 7761 | 9355 | 11321 | 13198 | 15476 | 19187 | 24426 | 29883 | 36535 | 49578 | 69590 | 73289 | 74026 | 74955 | 74664 | 74309 | 74854 | 72156 | 49948 | 37075 | 30155 | 24490 | 19160 | 15724 | 13007 | 10963 | 9287 | 7640 | 6418 | 5467 | 4832 | 4128 | 3496 | 2948 | 2761 | 2304 | 1974 | 1818 | 1675 |
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