/var/www/html/rsat/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title Title -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	16608
	Sum of sequence lengths      	4999662
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	301
	Possible positions           	4983054
 Oligonucleotide statistics:
	Total occurrences    	4450878
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	4983054
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	418	7902
	2	-24	[-479,-460]	-469.5	459	8768
	3	-23	[-459,-440]	-449.5	532	9889
	4	-22	[-439,-420]	-429.5	608	11391
	5	-21	[-419,-400]	-409.5	686	13082
	6	-20	[-399,-380]	-389.5	780	14713
	7	-19	[-379,-360]	-369.5	907	16903
	8	-18	[-359,-340]	-349.5	1035	19436
	9	-17	[-339,-320]	-329.5	1212	22559
	10	-16	[-319,-300]	-309.5	1405	26363
	11	-15	[-299,-280]	-289.5	1633	30373
	12	-14	[-279,-260]	-269.5	1936	35864
	13	-13	[-259,-240]	-249.5	2318	42796
	14	-12	[-239,-220]	-229.5	2760	51010
	15	-11	[-219,-200]	-209.5	3285	60908
	16	-10	[-199,-180]	-189.5	3996	72941
	17	-9	[-179,-160]	-169.5	5015	89930
	18	-8	[-159,-140]	-149.5	6202	112601
	19	-7	[-139,-120]	-129.5	7530	137585
	20	-6	[-119,-100]	-109.5	9567	170418
	21	-5	[-99,-80]	-89.5	13928	233000
	22	-4	[-79,-60]	-69.5	16608	322993
	23	-3	[-59,-40]	-49.5	16608	332160
	24	-2	[-39,-20]	-29.5	16608	332160
	25	-1	[-19,0]	-9.5	16608	332160
	26	0	[1,20]	10.5	16608	332160
	27	1	[21,40]	30.5	16608	332160
	28	2	[41,60]	50.5	16608	332160
	29	3	[61,80]	70.5	16608	317328
	30	4	[81,100]	90.5	13494	224351
	31	5	[101,120]	110.5	9355	166461
	32	6	[121,140]	130.5	7404	134988
	33	7	[141,160]	150.5	6117	110239
	34	8	[161,180]	170.5	4916	87891
	35	9	[181,200]	190.5	3934	71546
	36	10	[201,220]	210.5	3236	59882
	37	11	[221,240]	230.5	2728	50157
	38	12	[241,260]	250.5	2291	42052
	39	13	[261,280]	270.5	1909	35257
	40	14	[281,300]	290.5	1607	29911
	41	15	[301,320]	310.5	1388	25976
	42	16	[321,340]	330.5	1200	22221
	43	17	[341,360]	350.5	1027	19199
	44	18	[361,380]	370.5	899	16648
	45	19	[381,400]	390.5	772	14525
	46	20	[401,420]	410.5	679	12923
	47	21	[421,440]	430.5	600	11239
	48	22	[441,460]	450.5	527	9746
	49	23	[461,480]	470.5	453	8689
	50	24	[481,500]	490.5	414	7440

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
gg gg 351732 1188.2 49 0.0e+00 0 300 1 511 491 585 688 751 873 995 1237 1419 1762 1877 2503 2903 3399 4207 5324 6546 8119 9808 12992 18505 24686 24080 23599 23022 23203 23279 23238 22076 16339 11684 9533 7869 5983 4700 3930 3278 2605 2169 1890 1675 1344 1187 1001 880 785 655 565 506 476
cc cc 351597 970.1 49 0.0e+00 0 300 2 487 557 629 686 835 904 1029 1186 1434 1608 1889 2190 2815 3404 3903 4843 6243 7716 9677 12022 16741 22634 23459 23061 23127 23299 23362 24137 24546 17608 12197 9867 7928 6358 5126 4179 3337 2801 2428 1976 1687 1392 1239 1059 920 740 716 630 509 477
aa aa 319762 943.8 49 0.0e+00 0 300 3 561 673 723 846 845 919 1176 1266 1517 1740 2075 2403 2782 3276 3899 4651 5810 7517 8888 10718 14244 21857 22688 22437 22228 22097 22099 21471 18929 12785 10009 8219 6802 5249 4321 3684 3041 2555 2155 1734 1566 1286 1176 1052 852 780 662 539 506 454
tt tt 319543 630.2 49 0.0e+00 0 300 4 539 529 613 765 862 986 1064 1228 1429 1724 1970 2309 2712 3348 3931 4453 5512 7028 8703 10259 13161 19308 21369 22009 22097 22253 22128 22353 20854 13977 10594 8787 7124 5497 4574 3808 3278 2742 2277 1894 1622 1491 1325 1069 841 850 705 574 562 456
ct ct 339800 577.9 49 0.0e+00 0 300 5 557 574 644 750 867 951 1060 1266 1459 1674 1953 2254 2766 3341 3802 4549 5920 7363 9096 11194 15724 21701 22460 22748 22989 22699 22770 23150 23410 16346 12072 9367 7544 6174 4891 3966 3413 2818 2253 2034 1634 1412 1167 1021 889 784 646 608 554 516
cg cg 130901 514.1 49 0.0e+00 0 300 6 147 164 203 220 279 339 336 409 490 573 681 856 1047 1264 1505 1951 2283 2975 3731 4899 6615 8805 8808 8744 8550 8611 8708 8877 8569 6254 4590 3664 3016 2295 1836 1559 1244 1001 853 693 613 492 419 366 320 260 247 210 183 147
gc gc 285506 498.6 49 0.0e+00 0 300 7 403 444 507 573 648 752 855 1041 1176 1343 1562 1908 2319 2771 3347 4028 5065 6294 7862 10181 14362 19280 19129 18874 18820 18909 18828 19227 18867 13483 9812 7725 6328 5176 4099 3326 2806 2321 1884 1615 1298 1173 971 868 738 644 544 490 448 382
ag ag 338792 477.6 49 0.0e+00 0 300 8 525 580 641 742 847 909 1100 1298 1497 1717 2029 2368 2844 3310 4141 5078 6281 7635 9501 11927 17179 23290 22893 22831 22686 22803 22906 22409 21183 15086 10893 8825 7326 5818 4705 3923 3283 2633 2168 1858 1645 1395 1182 1002 882 774 687 560 542 455
ta ta 179824 466.6 49 0.0e+00 0 300 9 299 350 362 470 479 542 673 739 869 998 1121 1331 1708 1976 2236 2692 3138 4016 4893 5903 7699 11015 12456 12396 12877 12661 12512 12124 10742 7407 5792 4825 3771 3049 2568 2150 1823 1547 1296 1084 900 832 679 577 487 453 413 327 312 255
at at 215348 373.7 49 1.5e-51 2.4e-50 49.61 10 356 442 464 525 581 677 775 873 1000 1193 1360 1596 2016 2334 2709 3091 3764 4898 5754 7087 9229 13473 14771 14865 15076 14954 14844 14650 13147 9038 6922 5847 4678 3667 3008 2500 2110 1849 1539 1282 1091 968 840 706 616 579 491 434 355 324
tc tc 279903 296.7 49 3.7e-37 6e-36 35.22 11 490 516 551 623 752 782 856 1021 1214 1399 1703 1877 2325 2786 3272 3883 5009 6224 7685 9378 13251 17986 18487 18705 18982 18758 18869 19163 19029 12867 9466 7733 6303 4832 3901 3185 2711 2260 1829 1604 1334 1164 1003 811 736 642 556 500 468 422
tg tg 312211 278.1 49 9.0e-34 1.4e-32 31.84 12 461 521 617 694 753 906 1076 1231 1340 1597 1831 2234 2604 3199 3741 4439 5510 7142 8577 10965 15412 21222 20935 20871 20948 20942 20756 21187 20152 13762 10310 8286 6763 5349 4367 3655 2945 2561 2110 1729 1517 1284 1071 976 841 783 599 534 464 442
ga ga 278667 271.8 49 1.2e-32 2e-31 30.70 13 404 458 514 571 694 778 923 1040 1171 1423 1613 1943 2331 2679 3300 4085 4961 6300 7613 9634 13249 18964 18853 19029 18779 18735 18958 18650 17649 12831 9249 7436 6191 4764 3845 3286 2689 2183 1793 1537 1412 1115 970 829 725 661 573 475 417 385
ca ca 312357 251.6 49 4.9e-29 7.9e-28 27.10 14 536 576 640 684 845 876 1026 1142 1415 1560 1828 2133 2516 3001 3776 4350 5508 6830 8581 10465 14589 20344 20751 20853 20991 20984 21028 20912 20884 14814 10404 8488 6978 5750 4490 3559 3044 2601 2101 1725 1517 1345 1129 956 868 763 645 561 530 465
ac ac 217441 211.8 49 4.0e-22 6.4e-21 20.20 15 364 381 422 479 601 638 741 789 978 1115 1249 1480 1799 2086 2604 3045 3824 4783 6134 7391 10096 14026 14518 14586 14760 14686 14797 14661 14644 10014 7250 5905 4699 3954 3055 2479 2130 1754 1434 1214 1067 902 720 641 567 498 425 384 349 323
gt gt 217494 178.7 49 1.2e-16 1.9e-15 14.72 16 327 364 408 496 533 615 712 820 954 1095 1283 1565 1790 2260 2624 3182 3853 5024 6033 7568 10528 14780 14653 14625 14620 14668 14595 14587 13893 9496 7151 5845 4799 3653 3063 2603 2071 1789 1465 1183 1075 917 759 652 603 509 434 355 317 300 
 Host name	rsat
 Job started	2025-11-25.172206
 Job done	2025-11-25.172232
 Seconds	26.56
	user	26.56
	system	0
	cuser	0
;	csystem	0