position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title Title -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 2368 Sum of sequence lengths 762040 Min sequence length 0 Max sequence length 1000 Average sequence length 321 Possible positions 762040 Oligonucleotide statistics: Total occurrences 387106 Position interval parameters: Position interval 20 Number of windows 50 Total positions 762040 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 79 1492 2 -24 [-479,-460] -469.5 90 1672 3 -23 [-459,-440] -449.5 98 1892 4 -22 [-439,-420] -429.5 105 2020 5 -21 [-419,-400] -409.5 118 2235 6 -20 [-399,-380] -389.5 132 2538 7 -19 [-379,-360] -369.5 158 2930 8 -18 [-359,-340] -349.5 179 3321 9 -17 [-339,-320] -329.5 212 4001 10 -16 [-319,-300] -309.5 240 4533 11 -15 [-299,-280] -289.5 271 5105 12 -14 [-279,-260] -269.5 310 5767 13 -13 [-259,-240] -249.5 379 6943 14 -12 [-239,-220] -229.5 459 8443 15 -11 [-219,-200] -209.5 545 10054 16 -10 [-199,-180] -189.5 660 12061 17 -9 [-179,-160] -169.5 814 14913 18 -8 [-159,-140] -149.5 1008 18351 19 -7 [-139,-120] -129.5 1254 22613 20 -6 [-119,-100] -109.5 1575 28412 21 -5 [-99,-80] -89.5 1985 35547 22 -4 [-79,-60] -69.5 2368 45231 23 -3 [-59,-40] -49.5 2368 47360 24 -2 [-39,-20] -29.5 2368 47360 25 -1 [-19,0] -9.5 2368 47360 26 0 [1,20] 10.5 2368 47360 27 1 [21,40] 30.5 2368 47360 28 2 [41,60] 50.5 2368 47360 29 3 [61,80] 70.5 2368 44872 30 4 [81,100] 90.5 1966 35128 31 5 [101,120] 110.5 1558 28096 32 6 [121,140] 130.5 1233 22368 33 7 [141,160] 150.5 998 18153 34 8 [161,180] 170.5 806 14774 35 9 [181,200] 190.5 656 11946 36 10 [201,220] 210.5 539 9966 37 11 [221,240] 230.5 455 8370 38 12 [241,260] 250.5 374 6872 39 13 [261,280] 270.5 310 5732 40 14 [281,300] 290.5 270 5074 41 15 [301,320] 310.5 238 4505 42 16 [321,340] 330.5 210 3965 43 17 [341,360] 350.5 177 3306 44 18 [361,380] 370.5 158 2896 45 19 [381,400] 390.5 132 2521 46 20 [401,420] 410.5 118 2221 47 21 [421,440] 430.5 105 2013 48 22 [441,460] 450.5 98 1884 49 23 [461,480] 470.5 90 1662 50 24 [481,500] 490.5 78 1482 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 110748 | 7640.1 | 49 | 0.0e+00 | 0 | 300 | 1 | 109 | 100 | 98 | 109 | 126 | 151 | 180 | 214 | 245 | 311 | 344 | 443 | 656 | 884 | 1021 | 1313 | 1715 | 2346 | 3110 | 4340 | 5984 | 8004 | 8338 | 8306 | 8175 | 8300 | 8184 | 8352 | 7620 | 5428 | 3923 | 2886 | 2256 | 1664 | 1163 | 907 | 783 | 575 | 372 | 283 | 254 | 222 | 166 | 182 | 134 | 97 | 119 | 111 | 72 | 73 |
| c | c | 110118 | 7278.5 | 49 | 0.0e+00 | 0 | 300 | 2 | 92 | 128 | 126 | 111 | 117 | 143 | 215 | 202 | 218 | 307 | 359 | 453 | 638 | 770 | 906 | 1256 | 1725 | 2338 | 2953 | 4075 | 5620 | 7827 | 8364 | 8230 | 8189 | 8114 | 8198 | 8054 | 7829 | 5649 | 4132 | 2893 | 2327 | 1686 | 1259 | 973 | 787 | 625 | 475 | 343 | 284 | 220 | 183 | 161 | 145 | 111 | 91 | 94 | 60 | 63 |
| a | a | 83195 | 4193.2 | 49 | 0.0e+00 | 0 | 300 | 3 | 105 | 97 | 96 | 85 | 90 | 108 | 138 | 141 | 204 | 258 | 319 | 333 | 563 | 693 | 848 | 1040 | 1399 | 1921 | 2521 | 3401 | 4449 | 5739 | 6037 | 5879 | 5958 | 6025 | 5841 | 5788 | 5639 | 4128 | 3072 | 2401 | 1882 | 1384 | 988 | 810 | 640 | 483 | 321 | 255 | 225 | 187 | 154 | 136 | 99 | 89 | 72 | 54 | 46 | 54 |
| t | t | 83045 | 3999.7 | 49 | 0.0e+00 | 0 | 300 | 4 | 110 | 106 | 111 | 103 | 94 | 129 | 165 | 159 | 218 | 224 | 281 | 352 | 562 | 661 | 776 | 971 | 1483 | 1884 | 2440 | 3347 | 4261 | 5861 | 5777 | 5914 | 5999 | 5834 | 6037 | 5904 | 5443 | 4211 | 3170 | 2448 | 1774 | 1436 | 1046 | 829 | 678 | 499 | 333 | 302 | 197 | 182 | 175 | 144 | 95 | 83 | 61 | 58 | 65 | 53 |
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