/var/www/html/rsat/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab 
 position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title Title -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Citation: van Helden, et al. (2000).  Nucleic Acids Res 28, 1000-1010.
 Sequence file                	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta
 Sequence format              	fasta
 Sequence type                	dna
 Output file                  	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
 Oligo length                 	2
 Occurrences counted  on a single  strands
 Conditions of applicability checked.
 Background model estimation: homogeneous repartition
 Sequence statistics:
	Nb of sequences              	2368
	Sum of sequence lengths      	762040
	Min sequence length          	0
	Max sequence length          	1000
	Average sequence length      	321
	Possible positions           	759672
 Oligonucleotide statistics:
	Total occurrences    	384581
 Position interval parameters:
	Position interval    	20
	Number of windows    	50
	Total positions      	759672
	Degrees of freedom   	49
 K-mer clustering parameters:
	Number of clusters   	0
	Clustering method    	complete
 Position intervals:
	window	[min,max]	mid	seq	occ
	1	-25	[-499,-480]	-489.5	79	1492
	2	-24	[-479,-460]	-469.5	90	1672
	3	-23	[-459,-440]	-449.5	98	1892
	4	-22	[-439,-420]	-429.5	105	2020
	5	-21	[-419,-400]	-409.5	118	2235
	6	-20	[-399,-380]	-389.5	132	2538
	7	-19	[-379,-360]	-369.5	158	2930
	8	-18	[-359,-340]	-349.5	179	3321
	9	-17	[-339,-320]	-329.5	212	4001
	10	-16	[-319,-300]	-309.5	240	4533
	11	-15	[-299,-280]	-289.5	271	5105
	12	-14	[-279,-260]	-269.5	310	5767
	13	-13	[-259,-240]	-249.5	379	6943
	14	-12	[-239,-220]	-229.5	459	8443
	15	-11	[-219,-200]	-209.5	545	10054
	16	-10	[-199,-180]	-189.5	660	12061
	17	-9	[-179,-160]	-169.5	814	14913
	18	-8	[-159,-140]	-149.5	1008	18351
	19	-7	[-139,-120]	-129.5	1254	22613
	20	-6	[-119,-100]	-109.5	1575	28412
	21	-5	[-99,-80]	-89.5	1985	35547
	22	-4	[-79,-60]	-69.5	2368	45231
	23	-3	[-59,-40]	-49.5	2368	47360
	24	-2	[-39,-20]	-29.5	2368	47360
	25	-1	[-19,0]	-9.5	2368	47360
	26	0	[1,20]	10.5	2368	47360
	27	1	[21,40]	30.5	2368	47360
	28	2	[41,60]	50.5	2368	47360
	29	3	[61,80]	70.5	2368	44470
	30	4	[81,100]	90.5	1952	34720
	31	5	[101,120]	110.5	1553	27771
	32	6	[121,140]	130.5	1226	22133
	33	7	[141,160]	150.5	993	17961
	34	8	[161,180]	170.5	802	14624
	35	9	[181,200]	190.5	652	11829
	36	10	[201,220]	210.5	536	9882
	37	11	[221,240]	230.5	454	8289
	38	12	[241,260]	250.5	374	6808
	39	13	[261,280]	270.5	308	5692
	40	14	[281,300]	290.5	269	5042
	41	15	[301,320]	310.5	237	4477
	42	16	[321,340]	330.5	210	3932
	43	17	[341,360]	350.5	176	3287
	44	18	[361,380]	370.5	158	2870
	45	19	[381,400]	390.5	132	2507
	46	20	[401,420]	410.5	117	2208
	47	21	[421,440]	430.5	104	2006
	48	22	[441,460]	450.5	98	1876
	49	23	[461,480]	470.5	89	1650
	50	24	[481,500]	490.5	78	1404

 Column headers
	1	seq            	pattern sequence
	2	id             	pattern identifier
	3	occ            	pattern occurrences
	4	chi2           	observed chi-square
	5	df             	degrees of freedom
	6	Pval           	P-value (probability for one word to be a false positive)
	7	Eval           	E-value; expected number of false positives (Eval = Pval * nb_tests)
	8	sig            	Significance (sig = -log10(Eval))
	9	rank           	rank of the pattern according to sorting criterion
	10	-489.5         	occurrences in window	1	[-499,-480]
	11	-469.5         	occurrences in window	2	[-479,-460]
	12	-449.5         	occurrences in window	3	[-459,-440]
	13	-429.5         	occurrences in window	4	[-439,-420]
	14	-409.5         	occurrences in window	5	[-419,-400]
	15	-389.5         	occurrences in window	6	[-399,-380]
	16	-369.5         	occurrences in window	7	[-379,-360]
	17	-349.5         	occurrences in window	8	[-359,-340]
	18	-329.5         	occurrences in window	9	[-339,-320]
	19	-309.5         	occurrences in window	10	[-319,-300]
	20	-289.5         	occurrences in window	11	[-299,-280]
	21	-269.5         	occurrences in window	12	[-279,-260]
	22	-249.5         	occurrences in window	13	[-259,-240]
	23	-229.5         	occurrences in window	14	[-239,-220]
	24	-209.5         	occurrences in window	15	[-219,-200]
	25	-189.5         	occurrences in window	16	[-199,-180]
	26	-169.5         	occurrences in window	17	[-179,-160]
	27	-149.5         	occurrences in window	18	[-159,-140]
	28	-129.5         	occurrences in window	19	[-139,-120]
	29	-109.5         	occurrences in window	20	[-119,-100]
	30	-89.5          	occurrences in window	21	[-99,-80]
	31	-69.5          	occurrences in window	22	[-79,-60]
	32	-49.5          	occurrences in window	23	[-59,-40]
	33	-29.5          	occurrences in window	24	[-39,-20]
	34	-9.5           	occurrences in window	25	[-19,0]
	35	10.5           	occurrences in window	26	[1,20]
	36	30.5           	occurrences in window	27	[21,40]
	37	50.5           	occurrences in window	28	[41,60]
	38	70.5           	occurrences in window	29	[61,80]
	39	90.5           	occurrences in window	30	[81,100]
	40	110.5          	occurrences in window	31	[101,120]
	41	130.5          	occurrences in window	32	[121,140]
	42	150.5          	occurrences in window	33	[141,160]
	43	170.5          	occurrences in window	34	[161,180]
	44	190.5          	occurrences in window	35	[181,200]
	45	210.5          	occurrences in window	36	[201,220]
	46	230.5          	occurrences in window	37	[221,240]
	47	250.5          	occurrences in window	38	[241,260]
	48	270.5          	occurrences in window	39	[261,280]
	49	290.5          	occurrences in window	40	[281,300]
	50	310.5          	occurrences in window	41	[301,320]
	51	330.5          	occurrences in window	42	[321,340]
	52	350.5          	occurrences in window	43	[341,360]
	53	370.5          	occurrences in window	44	[361,380]
	54	390.5          	occurrences in window	45	[381,400]
	55	410.5          	occurrences in window	46	[401,420]
	56	430.5          	occurrences in window	47	[421,440]
	57	450.5          	occurrences in window	48	[441,460]
	58	470.5          	occurrences in window	49	[461,480]
	59	490.5          	occurrences in window	50	[481,500]
seq id occ chi2 df Pval Eval sig rank -489.5 -469.5 -449.5 -429.5 -409.5 -389.5 -369.5 -349.5 -329.5 -309.5 -289.5 -269.5 -249.5 -229.5 -209.5 -189.5 -169.5 -149.5 -129.5 -109.5 -89.5 -69.5 -49.5 -29.5 -9.5 10.5 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5 270.5 290.5 310.5 330.5 350.5 370.5 390.5 410.5 430.5 450.5 470.5 490.5
gg gg 36720 2745.0 49 0.0e+00 0 300 1 35 24 29 38 35 46 57 67 74 102 107 134 233 313 359 435 570 762 985 1446 2079 2703 2845 2789 2702 2751 2672 2850 2506 1742 1281 930 720 539 355 284 254 192 115 80 83 67 53 57 47 36 45 45 22 25
gc gc 30837 2741.9 49 0.0e+00 0 300 2 23 26 29 22 35 35 45 41 61 85 86 125 158 201 249 346 458 608 804 1136 1602 2182 2375 2453 2369 2367 2436 2325 2274 1607 1076 742 594 452 311 246 197 144 95 78 62 51 36 38 33 23 31 33 20 12
cc cc 36485 2386.1 49 0.0e+00 0 300 3 22 47 44 37 36 45 82 68 65 107 123 162 199 241 296 411 569 746 1005 1366 1794 2614 2810 2723 2673 2713 2676 2649 2644 1861 1386 936 786 548 441 292 267 217 175 130 97 81 55 58 58 35 27 33 11 24
ag ag 28747 1867.0 49 0.0e+00 0 300 4 25 25 18 22 29 42 34 54 69 94 99 122 167 228 298 357 447 644 871 1185 1572 2043 2110 2038 2051 2182 2124 2146 1973 1402 1027 772 617 452 299 246 209 137 89 74 75 64 45 41 35 22 25 21 12 14
cg cg 17665 1730.4 49 0.0e+00 0 300 5 17 16 18 21 22 26 31 40 38 51 48 71 97 104 127 193 257 318 456 587 937 1309 1433 1447 1382 1371 1392 1372 1296 876 599 408 297 219 137 129 106 83 63 42 36 31 24 23 22 18 30 22 12 11
ca ca 27085 1705.8 49 0.0e+00 0 300 6 24 29 25 28 35 30 48 37 58 80 89 96 164 204 241 305 410 606 717 1062 1402 1891 2061 1955 1983 2010 1925 1964 1928 1395 1043 719 612 437 319 269 199 162 118 83 70 48 50 34 34 28 15 19 14 10
ct ct 28525 1686.2 49 0.0e+00 0 300 7 24 36 38 25 23 41 53 55 56 66 95 123 175 211 239 343 484 659 764 1053 1475 1998 2043 2085 2137 2003 2190 2062 1926 1489 1083 817 611 470 358 279 211 159 113 84 79 60 52 43 28 30 19 20 23 15
tg tg 27293 1554.4 49 0.0e+00 0 300 8 28 33 33 32 34 36 59 52 69 67 92 113 169 242 245 345 465 624 828 1147 1507 1946 1929 2033 2083 1939 1974 1980 1729 1310 950 735 560 436 341 250 215 142 89 84 58 62 41 55 26 22 19 22 25 18
ga ga 24272 1327.2 49 0.0e+00 0 300 9 28 27 16 22 32 32 40 63 61 71 88 109 143 209 250 294 386 541 727 989 1289 1706 1762 1699 1730 1812 1737 1790 1662 1155 882 698 556 385 272 204 180 134 82 64 69 61 44 45 33 18 26 16 16 17
tc tc 23995 1276.4 49 0.0e+00 0 300 10 29 27 34 24 27 49 46 53 56 59 78 112 147 188 205 282 419 559 666 927 1235 1781 1723 1755 1698 1713 1758 1741 1591 1191 882 689 522 380 273 236 178 151 118 71 58 46 56 39 32 32 15 17 14 13
ac ac 18470 1064.2 49 0.0e+00 0 300 11 21 25 24 22 22 17 38 34 38 60 70 67 125 155 166 214 302 427 508 712 1004 1348 1420 1296 1391 1378 1298 1291 1244 892 689 488 396 262 219 182 130 109 80 57 59 41 33 23 24 17 16 11 13 12
gt gt 18524 1043.7 49 0.0e+00 0 300 12 20 23 23 26 23 37 35 41 49 52 60 73 118 155 157 231 296 429 584 757 1002 1397 1340 1353 1356 1352 1328 1377 1140 883 650 499 371 270 221 163 146 101 79 58 40 41 33 38 18 19 17 17 12 14
aa aa 19937 961.0 49 0.0e+00 0 300 13 28 27 32 20 17 26 30 24 41 58 94 74 161 176 223 268 363 491 642 833 1098 1330 1495 1443 1427 1375 1356 1325 1275 972 680 618 454 364 239 198 145 113 80 57 52 51 36 35 13 29 17 7 10 15
tt tt 19948 935.7 49 0.0e+00 0 300 14 31 27 24 34 23 28 43 36 54 51 74 78 159 145 195 203 386 426 571 805 939 1400 1369 1376 1384 1389 1474 1447 1289 1060 801 623 429 388 256 203 173 122 80 93 43 47 48 30 24 16 12 8 19 13
at at 15136 581.6 49 0.0e+00 0 300 15 31 19 18 20 22 20 33 26 55 44 52 68 108 130 159 191 282 348 491 660 763 1009 995 1086 1068 1071 1048 1014 994 727 567 457 355 267 199 164 135 104 63 57 34 29 36 33 24 18 11 14 8 9
ta ta 10942 456.4 49 0.0e+00 0 300 16 21 17 17 12 10 16 15 18 38 46 36 47 85 84 127 139 210 270 365 454 563 717 730 738 819 775 812 725 703 516 426 321 218 186 139 123 100 67 33 48 32 21 27 19 11 12 13 9 5 7 
 Host name	rsat
 Job started	2025-11-25.172047
 Job done	2025-11-25.172051
 Seconds	4.03
	user	4.04
	system	0
	cuser	0
;	csystem	0