/var/www/html/rsat/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file2 	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/discovered_motifs/peak-motifs_motifs_disco_compa
	match_table_html	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	24	621
		file1	2	24	737
		file1	3	24	357
		file1	4	24	229
		file1	5	24	114
		file1	6	24	741
		file1	7	24	712
		file1	8	16	16540
		file1	9	24	738
		file1	10	23	312
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172023_2025-11-25.172023_YEwTMW/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		24		621
		file2		2		24		737
		file2		3		24		357
		file2		4		24		229
		file2		5		24		114
		file2		6		24		741
		file2		7		24		712
		file2		8		16		16540
		file2		9		24		738
		file2		10		23		312
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 1.000 1.000 16 16 16 16 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 1.000 1.000 23 23 23 23 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 R 0
oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 R 0
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m4 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m1 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 1.000 0.920 24 24 23 25 0.9200 0.9583 0.9583 R 1
oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 1.000 0.920 24 24 23 25 0.9200 0.9583 0.9583 R 1
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 1.000 0.920 24 24 23 25 0.9200 0.9583 0.9583 D 1
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m1 1.000 0.920 24 24 23 25 0.9200 0.9583 0.9583 D -1
oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 1.000 0.920 24 24 23 25 0.9200 0.9583 0.9583 R 1
oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m4 1.000 0.920 24 24 23 25 0.9200 0.9583 0.9583 R 1
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m4 0.999 0.919 24 24 23 25 0.9200 0.9583 0.9583 D -1
oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m2 0.999 0.919 24 24 23 25 0.9200 0.9583 0.9583 D 1
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 0.971 0.893 24 24 23 25 0.9200 0.9583 0.9583 R 1
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 0.971 0.893 24 24 23 25 0.9200 0.9583 0.9583 R 1
oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m5 0.742 0.599 24 23 21 26 0.8077 0.8750 0.9130 D 3
oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m4 0.742 0.599 23 24 21 26 0.8077 0.9130 0.8750 D -3
oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 0.936 0.562 24 24 18 30 0.6000 0.7500 0.7500 R -6
oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m1 0.936 0.562 24 24 18 30 0.6000 0.7500 0.7500 R -6
oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m4 0.936 0.561 24 24 18 30 0.6000 0.7500 0.7500 R -6
oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m3 0.936 0.561 24 24 18 30 0.6000 0.7500 0.7500 R -6
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 0.951 0.522 24 24 17 31 0.5484 0.7083 0.7083 D 7
oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 0.951 0.522 24 24 17 31 0.5484 0.7083 0.7083 D -7
oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 0.950 0.521 24 24 17 31 0.5484 0.7083 0.7083 D -7
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m4 0.950 0.521 24 24 17 31 0.5484 0.7083 0.7083 D 7
oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 0.935 0.513 24 24 17 31 0.5484 0.7083 0.7083 R -7
oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 0.935 0.513 24 24 17 31 0.5484 0.7083 0.7083 R -7
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 0.935 0.513 24 24 17 31 0.5484 0.7083 0.7083 D 7
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m2 0.935 0.513 24 24 17 31 0.5484 0.7083 0.7083 D -7
oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 0.956 0.478 24 24 16 32 0.5000 0.6667 0.6667 D -8
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m2 0.956 0.478 24 24 16 32 0.5000 0.6667 0.6667 D 8
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 0.955 0.478 24 24 16 32 0.5000 0.6667 0.6667 R 8
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m1 0.955 0.478 24 24 16 32 0.5000 0.6667 0.6667 R 8 
 Host name	rsat
 Job started	2025-11-25.172303
 Job done	2025-11-25.172313
 Seconds	0.99
	user	0.99
	system	0.39
	cuser	7.87
;	csystem	0.96