/var/www/html/rsat/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172316_2025-11-25.172316_q7E5xL/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172316_2025-11-25.172316_q7E5xL/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172316_2025-11-25.172316_q7E5xL/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172316_2025-11-25.172316_q7E5xL/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172316_2025-11-25.172316_q7E5xL/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172316_2025-11-25.172316_q7E5xL/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172316_2025-11-25.172316_q7E5xL/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172316_2025-11-25.172316_q7E5xL/results/discovered_motifs/peak-motifs_motifs_disco_compa
	html_index   	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172316_2025-11-25.172316_q7E5xL/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172316_2025-11-25.172316_q7E5xL/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172316_2025-11-25.172316_q7E5xL/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172316_2025-11-25.172316_q7E5xL/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	24	1052
		file1	2	17	2011
		file1	3	24	5092
		file1	4	24	415
		file1	5	24	831
		file1	6	13	5657
		file1	7	24	1117
		file1	8	24	1360
		file1	9	11	10088
		file1	10	24	1177
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172316_2025-11-25.172316_q7E5xL/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		24		1052
		file2		2		17		2011
		file2		3		24		5092
		file2		4		24		415
		file2		5		24		831
		file2		6		13		5657
		file2		7		24		1117
		file2		8		24		1360
		file2		9		11		10088
		file2		10		24		1177
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m1 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m2 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m1 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m4 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m4 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m2 1.000 1.000 17 17 17 17 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 1.000 1.000 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 0.803 0.803 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m5 0.803 0.803 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 0.785 0.785 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m3 0.785 0.785 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 0.741 0.741 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m5 0.741 0.741 24 24 24 24 1.0000 1.0000 1.0000 D 0
oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m5 0.704 0.648 24 24 23 25 0.9200 0.9583 0.9583 D -1
oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m3 0.704 0.648 24 24 23 25 0.9200 0.9583 0.9583 D 1
oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m2 0.750 0.634 24 24 22 26 0.8462 0.9167 0.9167 D -2
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m5 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m5 0.750 0.634 24 24 22 26 0.8462 0.9167 0.9167 D 2
oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m3 0.715 0.605 24 24 22 26 0.8462 0.9167 0.9167 R -2
oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m4 0.715 0.605 24 24 22 26 0.8462 0.9167 0.9167 R -2
oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 0.778 0.556 24 24 20 28 0.7143 0.8333 0.8333 D 4
oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m1 oligos_7nt_test_vs_ctrl_m3 0.778 0.556 24 24 20 28 0.7143 0.8333 0.8333 D -4
oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m2 0.705 0.548 24 24 21 27 0.7778 0.8750 0.8750 R 3
oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m4 oligos_7nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m4 0.705 0.548 24 24 21 27 0.7778 0.8750 0.8750 R 3
oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 0.820 0.537 24 24 19 29 0.6552 0.7917 0.7917 D -5
oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m3 oligos_6nt_test_vs_ctrl_m3 0.820 0.537 24 24 19 29 0.6552 0.7917 0.7917 D 5
oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m4 0.701 0.497 17 24 17 24 0.7083 1.0000 0.7083 D -7
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 0.701 0.497 24 17 17 24 0.7083 0.7083 1.0000 D 7
oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 0.738 0.484 24 24 19 29 0.6552 0.7917 0.7917 D 5
oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m3 oligos_7nt_test_vs_ctrl_m2 0.738 0.484 24 24 19 29 0.6552 0.7917 0.7917 D -5
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m5 0.726 0.476 24 24 19 29 0.6552 0.7917 0.7917 D -5
oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m5 oligos_6nt_test_vs_ctrl_m1 0.726 0.476 24 24 19 29 0.6552 0.7917 0.7917 D 5
oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m4 0.799 0.444 17 11 10 18 0.5556 0.5882 0.9091 D 7
oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 oligos_7nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m2 0.799 0.444 11 17 10 18 0.5556 0.9091 0.5882 D -7
oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 0.715 0.429 24 24 18 30 0.6000 0.7500 0.7500 R -6
oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 oligos_6nt_test_vs_ctrl_m1 oligos_6nt_test_vs_ctrl_m4 0.715 0.429 24 24 18 30 0.6000 0.7500 0.7500 R -6 
 Host name	rsat
 Job started	2025-11-25.172618
 Job done	2025-11-25.172629
 Seconds	1.37
	user	1.37
	system	0.55
	cuser	9.12
;	csystem	1.08