One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172316_2025-11-25.172316_q7E5xL/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/25/peak-motifs.2025-11-25.172316_2025-11-25.172316_q7E5xL/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m1_shift6 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift6 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=24; shift=6; ncol=30; ------wwwAAAAwAAAAArAAAAttAtww ; Alignment reference a 0 0 0 0 0 0 420 436 347 842 918 929 902 399 888 891 889 895 884 412 885 862 891 839 255 214 798 204 365 343 c 0 0 0 0 0 0 168 177 77 59 42 30 28 55 30 36 43 50 31 75 42 40 40 41 79 87 70 100 210 257 g 0 0 0 0 0 0 145 148 61 49 26 30 49 98 50 43 42 33 52 409 58 44 41 68 80 84 63 137 177 141 t 0 0 0 0 0 0 319 291 567 102 66 63 73 500 84 82 78 74 85 156 67 106 80 104 638 667 121 611 300 311

oligos_6nt_test_vs_ctrl_m1_shift6 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/6; ncol2=24; w=0; offset=0; strand=D; shift=6; score= 1; ------wwwAAAAwAAAAArAAAAttAtww ; cor=; Ncor= a 0 0 0 0 0 0 420 436 347 842 918 929 902 399 888 891 889 895 884 412 885 862 891 839 255 214 798 204 365 343 c 0 0 0 0 0 0 168 177 77 59 42 30 28 55 30 36 43 50 31 75 42 40 40 41 79 87 70 100 210 257 g 0 0 0 0 0 0 145 148 61 49 26 30 49 98 50 43 42 33 52 409 58 44 41 68 80 84 63 137 177 141 t 0 0 0 0 0 0 319 291 567 102 66 63 73 500 84 82 78 74 85 156 67 106 80 104 638 667 121 611 300 311

oligos_6nt_test_vs_ctrl_m3_shift6 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3; m=2/6; ncol2=24; w=0; offset=0; strand=D; shift=6; score=0.784932; ------aaAAAAaAAAAAAAAAAaAAAAaa ; cor=; Ncor= a 0 0 0 0 0 0 2787 3047 4235 4505 4618 4579 3405 4538 4757 4702 4692 3525 4553 4624 4717 4634 4486 3164 4516 4421 4395 4180 2992 2841 c 0 0 0 0 0 0 842 810 357 199 171 156 388 198 116 150 139 407 216 211 162 169 257 1171 216 230 217 278 717 796 g 0 0 0 0 0 0 523 519 216 177 143 163 1031 158 115 125 140 357 194 152 109 142 213 467 197 251 270 368 778 741 t 0 0 0 0 0 0 940 716 284 211 160 194 268 198 104 115 121 803 129 105 104 147 136 290 163 190 210 266 605 714

oligos_7nt_test_vs_ctrl_m5_shift6 (oligos_7nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5; m=3/6; ncol2=24; w=0; offset=0; strand=D; shift=6; score=0.741057; ------wwtAAAAtTTTAAAAAAAttAaww ; cor=; Ncor= a 0 0 0 0 0 0 459 422 230 861 878 830 878 233 166 201 196 935 903 939 926 933 860 942 244 259 824 766 437 443 c 0 0 0 0 0 0 165 222 94 76 93 90 76 86 50 55 86 49 83 60 79 51 75 59 69 74 96 112 220 221 g 0 0 0 0 0 0 189 180 79 92 69 85 71 60 70 71 55 59 66 58 49 67 82 47 84 101 83 121 171 182 t 0 0 0 0 0 0 364 353 774 148 137 172 152 798 891 850 840 134 125 120 123 126 160 129 780 743 174 178 349 331

oligos_7nt_test_vs_ctrl_m3_shift2 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=4/6; ncol2=24; w=-4; offset=-4; strand=D; shift=2; score= 0.5558; --wwTttattAAArAAAAwAAAArwa---- ; cor=; Ncor= a 0 0 398 428 205 200 238 827 223 247 1038 1074 1124 446 1137 1143 1138 1139 353 1109 1135 1131 1092 399 525 560 0 0 0 0 c 0 0 244 291 113 159 128 147 118 89 87 87 33 113 45 38 49 60 104 70 55 70 44 151 235 220 0 0 0 0 g 0 0 208 225 117 150 116 123 101 102 75 88 88 614 75 60 60 66 114 81 70 64 93 573 223 249 0 0 0 0 t 0 0 510 416 925 851 878 263 918 922 160 111 115 187 103 119 113 95 789 100 100 95 131 237 377 331 0 0 0 0

oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=5/6; ncol2=24; w=-5; offset=-5; strand=D; shift=1; score=0.475673; -wwtATAATTTAAtAAAAAAtAAww----- ; cor=; Ncor= a 0 300 306 157 605 129 616 610 132 117 164 592 644 204 656 603 644 624 653 611 203 666 635 339 326 0 0 0 0 0 c 0 117 139 66 57 72 43 56 61 32 50 88 40 35 32 75 51 40 55 49 59 40 43 156 146 0 0 0 0 0 g 0 150 129 67 61 51 76 55 52 74 50 50 55 52 42 58 47 61 36 54 83 37 52 122 121 0 0 0 0 0 t 0 264 257 541 108 579 96 110 586 608 567 101 92 540 101 95 89 106 87 117 486 88 101 214 238 0 0 0 0 0

oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4_rc; m=6/6; ncol2=24; w=-6; offset=-6; strand=R; shift=0; score=0.429205; wwTTTTcTTTAAArAAAAArtAwa------ ; cor=; Ncor= a 118 123 61 20 42 23 55 29 26 44 329 350 358 105 337 331 331 330 320 112 97 288 149 155 0 0 0 0 0 0 c 92 73 31 21 26 32 244 18 19 41 22 20 10 25 22 27 24 23 16 49 30 41 43 72 0 0 0 0 0 0 g 59 46 15 19 31 26 27 15 10 20 21 22 23 222 22 27 27 37 26 212 32 25 84 86 0 0 0 0 0 0 t 146 173 308 355 316 334 89 353 360 310 43 23 24 63 34 30 33 25 53 42 256 61 139 102 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m3_shift5 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift5 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=24; shift=5; ncol=29; -----aaAAAAaAAAAAAAAAAaAAAAaa ; Alignment reference a 0 0 0 0 0 2787 3047 4235 4505 4618 4579 3405 4538 4757 4702 4692 3525 4553 4624 4717 4634 4486 3164 4516 4421 4395 4180 2992 2841 c 0 0 0 0 0 842 810 357 199 171 156 388 198 116 150 139 407 216 211 162 169 257 1171 216 230 217 278 717 796 g 0 0 0 0 0 523 519 216 177 143 163 1031 158 115 125 140 357 194 152 109 142 213 467 197 251 270 368 778 741 t 0 0 0 0 0 940 716 284 211 160 194 268 198 104 115 121 803 129 105 104 147 136 290 163 190 210 266 605 714

oligos_6nt_test_vs_ctrl_m3_shift5 (oligos_6nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/3; ncol2=24; w=0; offset=0; strand=D; shift=5; score= 1; -----aaAAAAaAAAAAAAAAAaAAAAaa ; cor=; Ncor= a 0 0 0 0 0 2787 3047 4235 4505 4618 4579 3405 4538 4757 4702 4692 3525 4553 4624 4717 4634 4486 3164 4516 4421 4395 4180 2992 2841 c 0 0 0 0 0 842 810 357 199 171 156 388 198 116 150 139 407 216 211 162 169 257 1171 216 230 217 278 717 796 g 0 0 0 0 0 523 519 216 177 143 163 1031 158 115 125 140 357 194 152 109 142 213 467 197 251 270 368 778 741 t 0 0 0 0 0 940 716 284 211 160 194 268 198 104 115 121 803 129 105 104 147 136 290 163 190 210 266 605 714

oligos_6nt_test_vs_ctrl_m1_shift5 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=2/3; ncol2=24; w=0; offset=0; strand=D; shift=5; score=0.784932; -----wwwAAAAwAAAAArAAAAttAtww ; cor=; Ncor= a 0 0 0 0 0 420 436 347 842 918 929 902 399 888 891 889 895 884 412 885 862 891 839 255 214 798 204 365 343 c 0 0 0 0 0 168 177 77 59 42 30 28 55 30 36 43 50 31 75 42 40 40 41 79 87 70 100 210 257 g 0 0 0 0 0 145 148 61 49 26 30 49 98 50 43 42 33 52 409 58 44 41 68 80 84 63 137 177 141 t 0 0 0 0 0 319 291 567 102 66 63 73 500 84 82 78 74 85 156 67 106 80 104 638 667 121 611 300 311

oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=3/3; ncol2=24; w=-5; offset=-5; strand=D; shift=0; score=0.537076; wwTttattAAArAAAAwAAAArwa----- ; cor=; Ncor= a 398 428 205 200 238 827 223 247 1038 1074 1124 446 1137 1143 1138 1139 353 1109 1135 1131 1092 399 525 560 0 0 0 0 0 c 244 291 113 159 128 147 118 89 87 87 33 113 45 38 49 60 104 70 55 70 44 151 235 220 0 0 0 0 0 g 208 225 117 150 116 123 101 102 75 88 88 614 75 60 60 66 114 81 70 64 93 573 223 249 0 0 0 0 0 t 510 416 925 851 878 263 918 922 160 111 115 187 103 119 113 95 789 100 100 95 131 237 377 331 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m5_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=24; shift=0; ncol=24; wwtATAATTTAAtAAAAAAtAAww ; Alignment reference a 300 306 157 605 129 616 610 132 117 164 592 644 204 656 603 644 624 653 611 203 666 635 339 326 c 117 139 66 57 72 43 56 61 32 50 88 40 35 32 75 51 40 55 49 59 40 43 156 146 g 150 129 67 61 51 76 55 52 74 50 50 55 52 42 58 47 61 36 54 83 37 52 122 121 t 264 257 541 108 579 96 110 586 608 567 101 92 540 101 95 89 106 87 117 486 88 101 214 238

oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/4; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; wwtATAATTTAAtAAAAAAtAAww ; cor=; Ncor= a 300 306 157 605 129 616 610 132 117 164 592 644 204 656 603 644 624 653 611 203 666 635 339 326 c 117 139 66 57 72 43 56 61 32 50 88 40 35 32 75 51 40 55 49 59 40 43 156 146 g 150 129 67 61 51 76 55 52 74 50 50 55 52 42 58 47 61 36 54 83 37 52 122 121 t 264 257 541 108 579 96 110 586 608 567 101 92 540 101 95 89 106 87 117 486 88 101 214 238

oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=2/4; ncol2=24; w=0; offset=0; strand=D; shift=0; score=0.803473; wwtAAAAtTTTAAAAAAAttAaww ; cor=; Ncor= a 459 422 230 861 878 830 878 233 166 201 196 935 903 939 926 933 860 942 244 259 824 766 437 443 c 165 222 94 76 93 90 76 86 50 55 86 49 83 60 79 51 75 59 69 74 96 112 220 221 g 189 180 79 92 69 85 71 60 70 71 55 59 66 58 49 67 82 47 84 101 83 121 171 182 t 364 353 774 148 137 172 152 798 891 850 840 134 125 120 123 126 160 129 780 743 174 178 349 331

oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3; m=3/4; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.647851; -wwTttattAAArAAAAwAAAArw ; cor=; Ncor= a 0 398 428 205 200 238 827 223 247 1038 1074 1124 446 1137 1143 1138 1139 353 1109 1135 1131 1092 399 525 c 0 244 291 113 159 128 147 118 89 87 87 33 113 45 38 49 60 104 70 55 70 44 151 235 g 0 208 225 117 150 116 123 101 102 75 88 88 614 75 60 60 66 114 81 70 64 93 573 223 t 0 510 416 925 851 878 263 918 922 160 111 115 187 103 119 113 95 789 100 100 95 131 237 377

oligos_6nt_test_vs_ctrl_m1_shift5 (oligos_6nt_test_vs_ctrl_m1)
; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=4/4; ncol2=24; w=0; offset=5; strand=D; shift=5; score=0.475673; -----wwwAAAAwAAAAArAAAAt ; cor=; Ncor= a 0 0 0 0 0 420 436 347 842 918 929 902 399 888 891 889 895 884 412 885 862 891 839 255 c 0 0 0 0 0 168 177 77 59 42 30 28 55 30 36 43 50 31 75 42 40 40 41 79 g 0 0 0 0 0 145 148 61 49 26 30 49 98 50 43 42 33 52 409 58 44 41 68 80 t 0 0 0 0 0 319 291 567 102 66 63 73 500 84 82 78 74 85 156 67 106 80 104 638

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m3_shift5 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift5 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=24; shift=5; ncol=29; -----wwTttattAAArAAAAwAAAArwa ; Alignment reference a 0 0 0 0 0 398 428 205 200 238 827 223 247 1038 1074 1124 446 1137 1143 1138 1139 353 1109 1135 1131 1092 399 525 560 c 0 0 0 0 0 244 291 113 159 128 147 118 89 87 87 33 113 45 38 49 60 104 70 55 70 44 151 235 220 g 0 0 0 0 0 208 225 117 150 116 123 101 102 75 88 88 614 75 60 60 66 114 81 70 64 93 573 223 249 t 0 0 0 0 0 510 416 925 851 878 263 918 922 160 111 115 187 103 119 113 95 789 100 100 95 131 237 377 331

oligos_7nt_test_vs_ctrl_m3_shift5 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/6; ncol2=24; w=0; offset=0; strand=D; shift=5; score= 1; -----wwTttattAAArAAAAwAAAArwa ; cor=; Ncor= a 0 0 0 0 0 398 428 205 200 238 827 223 247 1038 1074 1124 446 1137 1143 1138 1139 353 1109 1135 1131 1092 399 525 560 c 0 0 0 0 0 244 291 113 159 128 147 118 89 87 87 33 113 45 38 49 60 104 70 55 70 44 151 235 220 g 0 0 0 0 0 208 225 117 150 116 123 101 102 75 88 88 614 75 60 60 66 114 81 70 64 93 573 223 249 t 0 0 0 0 0 510 416 925 851 878 263 918 922 160 111 115 187 103 119 113 95 789 100 100 95 131 237 377 331

oligos_6nt_test_vs_ctrl_m5_shift4 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5; m=2/6; ncol2=24; w=-1; offset=-1; strand=D; shift=4; score=0.647851; ----wwtATAATTTAAtAAAAAAtAAww- ; cor=; Ncor= a 0 0 0 0 300 306 157 605 129 616 610 132 117 164 592 644 204 656 603 644 624 653 611 203 666 635 339 326 0 c 0 0 0 0 117 139 66 57 72 43 56 61 32 50 88 40 35 32 75 51 40 55 49 59 40 43 156 146 0 g 0 0 0 0 150 129 67 61 51 76 55 52 74 50 50 55 52 42 58 47 61 36 54 83 37 52 122 121 0 t 0 0 0 0 264 257 541 108 579 96 110 586 608 567 101 92 540 101 95 89 106 87 117 486 88 101 214 238 0

oligos_6nt_test_vs_ctrl_m4_rc_shift3 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4_rc; m=3/6; ncol2=24; w=-2; offset=-2; strand=R; shift=3; score=0.604864; ---wwTTTTcTTTAAArAAAAArtAwa-- ; cor=; Ncor= a 0 0 0 118 123 61 20 42 23 55 29 26 44 329 350 358 105 337 331 331 330 320 112 97 288 149 155 0 0 c 0 0 0 92 73 31 21 26 32 244 18 19 41 22 20 10 25 22 27 24 23 16 49 30 41 43 72 0 0 g 0 0 0 59 46 15 19 31 26 27 15 10 20 21 22 23 222 22 27 27 37 26 212 32 25 84 86 0 0 t 0 0 0 146 173 308 355 316 334 89 353 360 310 43 23 24 63 34 30 33 25 53 42 256 61 139 102 0 0

oligos_6nt_test_vs_ctrl_m1_shift9 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=4/6; ncol2=24; w=0; offset=4; strand=D; shift=9; score= 0.5558; ---------wwwAAAAwAAAAArAAAAtt ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 420 436 347 842 918 929 902 399 888 891 889 895 884 412 885 862 891 839 255 214 c 0 0 0 0 0 0 0 0 0 168 177 77 59 42 30 28 55 30 36 43 50 31 75 42 40 40 41 79 87 g 0 0 0 0 0 0 0 0 0 145 148 61 49 26 30 49 98 50 43 42 33 52 409 58 44 41 68 80 84 t 0 0 0 0 0 0 0 0 0 319 291 567 102 66 63 73 500 84 82 78 74 85 156 67 106 80 104 638 667

oligos_6nt_test_vs_ctrl_m3_shift10 (oligos_6nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=5/6; ncol2=24; w=0; offset=5; strand=D; shift=10; score=0.537076; ----------aaAAAAaAAAAAAAAAAaA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2787 3047 4235 4505 4618 4579 3405 4538 4757 4702 4692 3525 4553 4624 4717 4634 4486 3164 4516 c 0 0 0 0 0 0 0 0 0 0 842 810 357 199 171 156 388 198 116 150 139 407 216 211 162 169 257 1171 216 g 0 0 0 0 0 0 0 0 0 0 523 519 216 177 143 163 1031 158 115 125 140 357 194 152 109 142 213 467 197 t 0 0 0 0 0 0 0 0 0 0 940 716 284 211 160 194 268 198 104 115 121 803 129 105 104 147 136 290 163

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2; m=6/6; ncol2=24; w=-5; offset=-5; strand=D; shift=0; score=0.483761; wwAAaATTTTTTTAAAAAAAttww----- ; cor=; Ncor= a 385 420 800 771 737 777 155 174 129 130 107 132 159 821 865 899 865 877 838 845 204 210 413 379 0 0 0 0 0 c 158 168 78 81 96 91 85 80 66 61 81 48 60 67 55 51 65 60 60 63 93 82 163 194 0 0 0 0 0 g 227 171 76 90 77 70 68 91 55 67 46 72 57 66 65 65 57 64 61 76 92 90 178 173 0 0 0 0 0 t 347 358 163 175 207 179 809 772 867 859 883 865 841 163 132 102 130 116 158 133 728 735 363 371 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m5_shift2 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift2 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=24; shift=2; ncol=26; --wwtAAAAtTTTAAAAAAAttAaww ; Alignment reference a 0 0 459 422 230 861 878 830 878 233 166 201 196 935 903 939 926 933 860 942 244 259 824 766 437 443 c 0 0 165 222 94 76 93 90 76 86 50 55 86 49 83 60 79 51 75 59 69 74 96 112 220 221 g 0 0 189 180 79 92 69 85 71 60 70 71 55 59 66 58 49 67 82 47 84 101 83 121 171 182 t 0 0 364 353 774 148 137 172 152 798 891 850 840 134 125 120 123 126 160 129 780 743 174 178 349 331

oligos_7nt_test_vs_ctrl_m5_shift2 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/4; ncol2=24; w=0; offset=0; strand=D; shift=2; score= 1; --wwtAAAAtTTTAAAAAAAttAaww ; cor=; Ncor= a 0 0 459 422 230 861 878 830 878 233 166 201 196 935 903 939 926 933 860 942 244 259 824 766 437 443 c 0 0 165 222 94 76 93 90 76 86 50 55 86 49 83 60 79 51 75 59 69 74 96 112 220 221 g 0 0 189 180 79 92 69 85 71 60 70 71 55 59 66 58 49 67 82 47 84 101 83 121 171 182 t 0 0 364 353 774 148 137 172 152 798 891 850 840 134 125 120 123 126 160 129 780 743 174 178 349 331

oligos_6nt_test_vs_ctrl_m5_shift2 (oligos_6nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=2/4; ncol2=24; w=0; offset=0; strand=D; shift=2; score=0.803473; --wwtATAATTTAAtAAAAAAtAAww ; cor=; Ncor= a 0 0 300 306 157 605 129 616 610 132 117 164 592 644 204 656 603 644 624 653 611 203 666 635 339 326 c 0 0 117 139 66 57 72 43 56 61 32 50 88 40 35 32 75 51 40 55 49 59 40 43 156 146 g 0 0 150 129 67 61 51 76 55 52 74 50 50 55 52 42 58 47 61 36 54 83 37 52 122 121 t 0 0 264 257 541 108 579 96 110 586 608 567 101 92 540 101 95 89 106 87 117 486 88 101 214 238

oligos_6nt_test_vs_ctrl_m1_shift2 (oligos_6nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=3/4; ncol2=24; w=0; offset=0; strand=D; shift=2; score=0.741057; --wwwAAAAwAAAAArAAAAttAtww ; cor=; Ncor= a 0 0 420 436 347 842 918 929 902 399 888 891 889 895 884 412 885 862 891 839 255 214 798 204 365 343 c 0 0 168 177 77 59 42 30 28 55 30 36 43 50 31 75 42 40 40 41 79 87 70 100 210 257 g 0 0 145 148 61 49 26 30 49 98 50 43 42 33 52 409 58 44 41 68 80 84 63 137 177 141 t 0 0 319 291 567 102 66 63 73 500 84 82 78 74 85 156 67 106 80 104 638 667 121 611 300 311

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2; m=4/4; ncol2=24; w=-2; offset=-2; strand=D; shift=0; score=0.634323; wwAAaATTTTTTTAAAAAAAttww-- ; cor=; Ncor= a 385 420 800 771 737 777 155 174 129 130 107 132 159 821 865 899 865 877 838 845 204 210 413 379 0 0 c 158 168 78 81 96 91 85 80 66 61 81 48 60 67 55 51 65 60 60 63 93 82 163 194 0 0 g 227 171 76 90 77 70 68 91 55 67 46 72 57 66 65 65 57 64 61 76 92 90 178 173 0 0 t 347 358 163 175 207 179 809 772 867 859 883 865 841 163 132 102 130 116 158 133 728 735 363 371 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m4_shift7 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m4_shift7 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4; m=0 (reference); ncol1=11; shift=7; ncol=18; -------wmAGTAATAww ; Alignment reference a 0 0 0 0 0 0 0 3360 3182 9305 861 1128 8930 9316 770 8812 3237 3167 c 0 0 0 0 0 0 0 1770 2527 58 325 467 433 180 444 279 1868 1974 g 0 0 0 0 0 0 0 2218 2101 288 8296 630 407 258 477 427 2306 1936 t 0 0 0 0 0 0 0 2740 2278 437 606 7863 318 334 8397 570 2677 3011

oligos_7nt_test_vs_ctrl_m4_shift7 (oligos_7nt_test_vs_ctrl_m4)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m4; m=1/2; ncol2=11; w=0; offset=0; strand=D; shift=7; score= 1; -------wmAGTAATAww ; cor=; Ncor= a 0 0 0 0 0 0 0 3360 3182 9305 861 1128 8930 9316 770 8812 3237 3167 c 0 0 0 0 0 0 0 1770 2527 58 325 467 433 180 444 279 1868 1974 g 0 0 0 0 0 0 0 2218 2101 288 8296 630 407 258 477 427 2306 1936 t 0 0 0 0 0 0 0 2740 2278 437 606 7863 318 334 8397 570 2677 3011

oligos_6nt_test_vs_ctrl_m2_shift0 (oligos_6nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=2/2; ncol2=17; w=-7; offset=-7; strand=D; shift=0; score=0.443887; wwTcTTAAAAgTAATww- ; cor=; Ncor= a 563 532 155 216 144 137 1569 1700 1768 1672 327 258 1554 1546 251 584 709 0 c 388 449 126 1230 100 127 129 81 76 51 137 154 165 135 125 387 393 0 g 394 375 84 141 37 175 108 93 76 101 1345 148 130 149 129 447 303 0 t 666 655 1646 424 1730 1572 205 137 91 187 202 1451 162 181 1506 593 606 0

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m1_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1; m=0 (reference); ncol1=13; shift=0; ncol=13; kcaAGGACCTGgv ; Alignment reference a 1202 1261 3575 5240 120 84 4633 143 133 105 261 1154 1552 c 1076 1953 1225 168 80 95 190 5262 5200 201 235 1252 1495 g 1863 1374 416 172 5355 5345 128 144 232 120 4746 2155 1596 t 1516 1069 441 77 102 133 706 108 92 5231 415 1096 1014

oligos_7nt_test_vs_ctrl_m1_shift0 (oligos_7nt_test_vs_ctrl_m1)
; oligos_7nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m1; m=1/1; ncol2=13; w=0; offset=0; strand=D; shift=0; score= 1; kcaAGGACCTGgv ; cor=; Ncor= a 1202 1261 3575 5240 120 84 4633 143 133 105 261 1154 1552 c 1076 1953 1225 168 80 95 190 5262 5200 201 235 1252 1495 g 1863 1374 416 172 5355 5345 128 144 232 120 4746 2155 1596 t 1516 1069 441 77 102 133 706 108 92 5231 415 1096 1014

One-to-n matrix alignment; reference matrix: oligos_7nt_test_vs_ctrl_m2_shift0 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=24; shift=0; ncol=24; wwAAaATTTTTTTAAAAAAAttww ; Alignment reference a 385 420 800 771 737 777 155 174 129 130 107 132 159 821 865 899 865 877 838 845 204 210 413 379 c 158 168 78 81 96 91 85 80 66 61 81 48 60 67 55 51 65 60 60 63 93 82 163 194 g 227 171 76 90 77 70 68 91 55 67 46 72 57 66 65 65 57 64 61 76 92 90 178 173 t 347 358 163 175 207 179 809 772 867 859 883 865 841 163 132 102 130 116 158 133 728 735 363 371

oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/4; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; wwAAaATTTTTTTAAAAAAAttww ; cor=; Ncor= a 385 420 800 771 737 777 155 174 129 130 107 132 159 821 865 899 865 877 838 845 204 210 413 379 c 158 168 78 81 96 91 85 80 66 61 81 48 60 67 55 51 65 60 60 63 93 82 163 194 g 227 171 76 90 77 70 68 91 55 67 46 72 57 66 65 65 57 64 61 76 92 90 178 173 t 347 358 163 175 207 179 809 772 867 859 883 865 841 163 132 102 130 116 158 133 728 735 363 371

oligos_7nt_test_vs_ctrl_m5_shift2 (oligos_7nt_test_vs_ctrl_m5)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5; m=2/4; ncol2=24; w=0; offset=2; strand=D; shift=2; score=0.634323; --wwtAAAAtTTTAAAAAAAttAa ; cor=; Ncor= a 0 0 459 422 230 861 878 830 878 233 166 201 196 935 903 939 926 933 860 942 244 259 824 766 c 0 0 165 222 94 76 93 90 76 86 50 55 86 49 83 60 79 51 75 59 69 74 96 112 g 0 0 189 180 79 92 69 85 71 60 70 71 55 59 66 58 49 67 82 47 84 101 83 121 t 0 0 364 353 774 148 137 172 152 798 891 850 840 134 125 120 123 126 160 129 780 743 174 178

oligos_6nt_test_vs_ctrl_m4_rc_shift3 (oligos_6nt_test_vs_ctrl_m4_rc)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4_rc; m=3/4; ncol2=24; w=0; offset=3; strand=R; shift=3; score=0.54798; ---wwTTTTcTTTAAArAAAAArt ; cor=; Ncor= a 0 0 0 118 123 61 20 42 23 55 29 26 44 329 350 358 105 337 331 331 330 320 112 97 c 0 0 0 92 73 31 21 26 32 244 18 19 41 22 20 10 25 22 27 24 23 16 49 30 g 0 0 0 59 46 15 19 31 26 27 15 10 20 21 22 23 222 22 27 27 37 26 212 32 t 0 0 0 146 173 308 355 316 334 89 353 360 310 43 23 24 63 34 30 33 25 53 42 256

oligos_7nt_test_vs_ctrl_m3_shift5 (oligos_7nt_test_vs_ctrl_m3)
; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=4/4; ncol2=24; w=0; offset=5; strand=D; shift=5; score=0.483761; -----wwTttattAAArAAAAwAA ; cor=; Ncor= a 0 0 0 0 0 398 428 205 200 238 827 223 247 1038 1074 1124 446 1137 1143 1138 1139 353 1109 1135 c 0 0 0 0 0 244 291 113 159 128 147 118 89 87 87 33 113 45 38 49 60 104 70 55 g 0 0 0 0 0 208 225 117 150 116 123 101 102 75 88 88 614 75 60 60 66 114 81 70 t 0 0 0 0 0 510 416 925 851 878 263 918 922 160 111 115 187 103 119 113 95 789 100 100

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m4_shift6 ; 6 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift6 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=24; shift=6; ncol=30; ------twTayTTTTTyTTTAAAgAAAAww ; Alignment reference a 0 0 0 0 0 0 102 139 61 256 42 53 25 33 30 34 63 24 23 43 310 360 353 89 334 316 355 308 173 146 c 0 0 0 0 0 0 86 84 25 32 212 26 37 27 27 22 222 23 22 21 20 10 15 27 26 31 19 15 46 59 g 0 0 0 0 0 0 72 43 41 30 49 16 23 24 27 22 25 10 20 22 41 19 18 244 32 26 21 31 73 92 t 0 0 0 0 0 0 155 149 288 97 112 320 330 331 331 337 105 358 350 329 44 26 29 55 23 42 20 61 123 118

oligos_6nt_test_vs_ctrl_m4_shift6 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/5; ncol2=24; w=0; offset=0; strand=D; shift=6; score= 1; ------twTayTTTTTyTTTAAAgAAAAww ; cor=; Ncor= a 0 0 0 0 0 0 102 139 61 256 42 53 25 33 30 34 63 24 23 43 310 360 353 89 334 316 355 308 173 146 c 0 0 0 0 0 0 86 84 25 32 212 26 37 27 27 22 222 23 22 21 20 10 15 27 26 31 19 15 46 59 g 0 0 0 0 0 0 72 43 41 30 49 16 23 24 27 22 25 10 20 22 41 19 18 244 32 26 21 31 73 92 t 0 0 0 0 0 0 155 149 288 97 112 320 330 331 331 337 105 358 350 329 44 26 29 55 23 42 20 61 123 118

oligos_7nt_test_vs_ctrl_m3_rc_shift4 (oligos_7nt_test_vs_ctrl_m3_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3_rc; m=2/5; ncol2=24; w=-2; offset=-2; strand=R; shift=4; score=0.604864; ----twyTTTTwTTTTyTTTaataaAww-- ; cor=; Ncor= a 0 0 0 0 331 377 237 131 95 100 100 789 95 113 119 103 187 115 111 160 922 918 263 878 851 925 416 510 0 0 c 0 0 0 0 249 223 573 93 64 70 81 114 66 60 60 75 614 88 88 75 102 101 123 116 150 117 225 208 0 0 g 0 0 0 0 220 235 151 44 70 55 70 104 60 49 38 45 113 33 87 87 89 118 147 128 159 113 291 244 0 0 t 0 0 0 0 560 525 399 1092 1131 1135 1109 353 1139 1138 1143 1137 446 1124 1074 1038 247 223 827 238 200 205 428 398 0 0

oligos_7nt_test_vs_ctrl_m2_rc_shift9 (oligos_7nt_test_vs_ctrl_m2_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2_rc; m=3/5; ncol2=24; w=0; offset=3; strand=R; shift=9; score=0.54798; ---------wwaaTTTTTTTAAAAAAATtT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 371 363 735 728 133 158 116 130 102 132 163 841 865 883 859 867 772 809 179 207 175 c 0 0 0 0 0 0 0 0 0 173 178 90 92 76 61 64 57 65 65 66 57 72 46 67 55 91 68 70 77 90 g 0 0 0 0 0 0 0 0 0 194 163 82 93 63 60 60 65 51 55 67 60 48 81 61 66 80 85 91 96 81 t 0 0 0 0 0 0 0 0 0 379 413 210 204 845 838 877 865 899 865 821 159 132 107 130 129 174 155 777 737 771

oligos_6nt_test_vs_ctrl_m2_shift13 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=4/5; ncol2=17; w=0; offset=7; strand=D; shift=13; score=0.496837; -------------wwTcTTAAAAgTAATww ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 0 563 532 155 216 144 137 1569 1700 1768 1672 327 258 1554 1546 251 584 709 c 0 0 0 0 0 0 0 0 0 0 0 0 0 388 449 126 1230 100 127 129 81 76 51 137 154 165 135 125 387 393 g 0 0 0 0 0 0 0 0 0 0 0 0 0 394 375 84 141 37 175 108 93 76 101 1345 148 130 149 129 447 303 t 0 0 0 0 0 0 0 0 0 0 0 0 0 666 655 1646 424 1730 1572 205 137 91 187 202 1451 162 181 1506 593 606

oligos_6nt_test_vs_ctrl_m1_rc_shift0 (oligos_6nt_test_vs_ctrl_m1_rc)
; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1_rc; m=5/5; ncol2=24; w=-6; offset=-6; strand=R; shift=0; score=0.429205; wwaTaaTTTTyTTTTTwTTTTwww------ ; cor=; Ncor= a 311 300 611 121 667 638 104 80 106 67 156 85 74 78 82 84 500 73 63 66 102 567 291 319 0 0 0 0 0 0 c 141 177 137 63 84 80 68 41 44 58 409 52 33 42 43 50 98 49 30 26 49 61 148 145 0 0 0 0 0 0 g 257 210 100 70 87 79 41 40 40 42 75 31 50 43 36 30 55 28 30 42 59 77 177 168 0 0 0 0 0 0 t 343 365 204 798 214 255 839 891 862 885 412 884 895 889 891 888 399 902 929 918 842 347 436 420 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_test_vs_ctrl_m2_shift7 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift7 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=17; shift=7; ncol=24; -------wwTcTTAAAAgTAATww ; Alignment reference a 0 0 0 0 0 0 0 563 532 155 216 144 137 1569 1700 1768 1672 327 258 1554 1546 251 584 709 c 0 0 0 0 0 0 0 388 449 126 1230 100 127 129 81 76 51 137 154 165 135 125 387 393 g 0 0 0 0 0 0 0 394 375 84 141 37 175 108 93 76 101 1345 148 130 149 129 447 303 t 0 0 0 0 0 0 0 666 655 1646 424 1730 1572 205 137 91 187 202 1451 162 181 1506 593 606

oligos_6nt_test_vs_ctrl_m2_shift7 (oligos_6nt_test_vs_ctrl_m2)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/3; ncol2=17; w=0; offset=0; strand=D; shift=7; score= 1; -------wwTcTTAAAAgTAATww ; cor=; Ncor= a 0 0 0 0 0 0 0 563 532 155 216 144 137 1569 1700 1768 1672 327 258 1554 1546 251 584 709 c 0 0 0 0 0 0 0 388 449 126 1230 100 127 129 81 76 51 137 154 165 135 125 387 393 g 0 0 0 0 0 0 0 394 375 84 141 37 175 108 93 76 101 1345 148 130 149 129 447 303 t 0 0 0 0 0 0 0 666 655 1646 424 1730 1572 205 137 91 187 202 1451 162 181 1506 593 606

oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=2/3; ncol2=24; w=-7; offset=-7; strand=D; shift=0; score=0.496837; twTayTTTTTyTTTAAAgAAAAww ; cor=; Ncor= a 102 139 61 256 42 53 25 33 30 34 63 24 23 43 310 360 353 89 334 316 355 308 173 146 c 86 84 25 32 212 26 37 27 27 22 222 23 22 21 20 10 15 27 26 31 19 15 46 59 g 72 43 41 30 49 16 23 24 27 22 25 10 20 22 41 19 18 244 32 26 21 31 73 92 t 155 149 288 97 112 320 330 331 331 337 105 358 350 329 44 26 29 55 23 42 20 61 123 118

oligos_7nt_test_vs_ctrl_m4_shift14 (oligos_7nt_test_vs_ctrl_m4)
; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=3/3; ncol2=11; w=0; offset=7; strand=D; shift=14; score=0.443887; --------------wmAGTAATAw ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3360 3182 9305 861 1128 8930 9316 770 8812 3237 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1770 2527 58 325 467 433 180 444 279 1868 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2218 2101 288 8296 630 407 258 477 427 2306 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2740 2278 437 606 7863 318 334 8397 570 2677

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m1_shift6 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1; m=0 (reference); ncol1=24; shift=6; ncol=30; ------wwwAAAAwAAAAArAAAAttAtww ; Alignment reference a 0 0 0 0 0 0 420 436 347 842 918 929 902 399 888 891 889 895 884 412 885 862 891 839 255 214 798 204 365 343 c 0 0 0 0 0 0 168 177 77 59 42 30 28 55 30 36 43 50 31 75 42 40 40 41 79 87 70 100 210 257 g 0 0 0 0 0 0 145 148 61 49 26 30 49 98 50 43 42 33 52 409 58 44 41 68 80 84 63 137 177 141 t 0 0 0 0 0 0 319 291 567 102 66 63 73 500 84 82 78 74 85 156 67 106 80 104 638 667 121 611 300 311
oligos_6nt_test_vs_ctrl_m1_shift6 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m1; m=1/6; ncol2=24; w=0; offset=0; strand=D; shift=6; score= 1; ------wwwAAAAwAAAAArAAAAttAtww ; cor=; Ncor= a 0 0 0 0 0 0 420 436 347 842 918 929 902 399 888 891 889 895 884 412 885 862 891 839 255 214 798 204 365 343 c 0 0 0 0 0 0 168 177 77 59 42 30 28 55 30 36 43 50 31 75 42 40 40 41 79 87 70 100 210 257 g 0 0 0 0 0 0 145 148 61 49 26 30 49 98 50 43 42 33 52 409 58 44 41 68 80 84 63 137 177 141 t 0 0 0 0 0 0 319 291 567 102 66 63 73 500 84 82 78 74 85 156 67 106 80 104 638 667 121 611 300 311
oligos_6nt_test_vs_ctrl_m3_shift6 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m3; m=2/6; ncol2=24; w=0; offset=0; strand=D; shift=6; score=0.784932; ------aaAAAAaAAAAAAAAAAaAAAAaa ; cor=; Ncor= a 0 0 0 0 0 0 2787 3047 4235 4505 4618 4579 3405 4538 4757 4702 4692 3525 4553 4624 4717 4634 4486 3164 4516 4421 4395 4180 2992 2841 c 0 0 0 0 0 0 842 810 357 199 171 156 388 198 116 150 139 407 216 211 162 169 257 1171 216 230 217 278 717 796 g 0 0 0 0 0 0 523 519 216 177 143 163 1031 158 115 125 140 357 194 152 109 142 213 467 197 251 270 368 778 741 t 0 0 0 0 0 0 940 716 284 211 160 194 268 198 104 115 121 803 129 105 104 147 136 290 163 190 210 266 605 714
oligos_7nt_test_vs_ctrl_m5_shift6 (oligos_7nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m5; m=3/6; ncol2=24; w=0; offset=0; strand=D; shift=6; score=0.741057; ------wwtAAAAtTTTAAAAAAAttAaww ; cor=; Ncor= a 0 0 0 0 0 0 459 422 230 861 878 830 878 233 166 201 196 935 903 939 926 933 860 942 244 259 824 766 437 443 c 0 0 0 0 0 0 165 222 94 76 93 90 76 86 50 55 86 49 83 60 79 51 75 59 69 74 96 112 220 221 g 0 0 0 0 0 0 189 180 79 92 69 85 71 60 70 71 55 59 66 58 49 67 82 47 84 101 83 121 171 182 t 0 0 0 0 0 0 364 353 774 148 137 172 152 798 891 850 840 134 125 120 123 126 160 129 780 743 174 178 349 331
oligos_7nt_test_vs_ctrl_m3_shift2 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_7nt_test_vs_ctrl_m3; m=4/6; ncol2=24; w=-4; offset=-4; strand=D; shift=2; score= 0.5558; --wwTttattAAArAAAAwAAAArwa---- ; cor=; Ncor= a 0 0 398 428 205 200 238 827 223 247 1038 1074 1124 446 1137 1143 1138 1139 353 1109 1135 1131 1092 399 525 560 0 0 0 0 c 0 0 244 291 113 159 128 147 118 89 87 87 33 113 45 38 49 60 104 70 55 70 44 151 235 220 0 0 0 0 g 0 0 208 225 117 150 116 123 101 102 75 88 88 614 75 60 60 66 114 81 70 64 93 573 223 249 0 0 0 0 t 0 0 510 416 925 851 878 263 918 922 160 111 115 187 103 119 113 95 789 100 100 95 131 237 377 331 0 0 0 0
oligos_6nt_test_vs_ctrl_m5_shift1 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m5; m=5/6; ncol2=24; w=-5; offset=-5; strand=D; shift=1; score=0.475673; -wwtATAATTTAAtAAAAAAtAAww----- ; cor=; Ncor= a 0 300 306 157 605 129 616 610 132 117 164 592 644 204 656 603 644 624 653 611 203 666 635 339 326 0 0 0 0 0 c 0 117 139 66 57 72 43 56 61 32 50 88 40 35 32 75 51 40 55 49 59 40 43 156 146 0 0 0 0 0 g 0 150 129 67 61 51 76 55 52 74 50 50 55 52 42 58 47 61 36 54 83 37 52 122 121 0 0 0 0 0 t 0 264 257 541 108 579 96 110 586 608 567 101 92 540 101 95 89 106 87 117 486 88 101 214 238 0 0 0 0 0
oligos_6nt_test_vs_ctrl_m4_rc_shift0 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_6nt_test_vs_ctrl_m1 versus oligos_6nt_test_vs_ctrl_m4_rc; m=6/6; ncol2=24; w=-6; offset=-6; strand=R; shift=0; score=0.429205; wwTTTTcTTTAAArAAAAArtAwa------ ; cor=; Ncor= a 118 123 61 20 42 23 55 29 26 44 329 350 358 105 337 331 331 330 320 112 97 288 149 155 0 0 0 0 0 0 c 92 73 31 21 26 32 244 18 19 41 22 20 10 25 22 27 24 23 16 49 30 41 43 72 0 0 0 0 0 0 g 59 46 15 19 31 26 27 15 10 20 21 22 23 222 22 27 27 37 26 212 32 25 84 86 0 0 0 0 0 0 t 146 173 308 355 316 334 89 353 360 310 43 23 24 63 34 30 33 25 53 42 256 61 139 102 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m3_shift5 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3; m=0 (reference); ncol1=24; shift=5; ncol=29; -----aaAAAAaAAAAAAAAAAaAAAAaa ; Alignment reference a 0 0 0 0 0 2787 3047 4235 4505 4618 4579 3405 4538 4757 4702 4692 3525 4553 4624 4717 4634 4486 3164 4516 4421 4395 4180 2992 2841 c 0 0 0 0 0 842 810 357 199 171 156 388 198 116 150 139 407 216 211 162 169 257 1171 216 230 217 278 717 796 g 0 0 0 0 0 523 519 216 177 143 163 1031 158 115 125 140 357 194 152 109 142 213 467 197 251 270 368 778 741 t 0 0 0 0 0 940 716 284 211 160 194 268 198 104 115 121 803 129 105 104 147 136 290 163 190 210 266 605 714
oligos_6nt_test_vs_ctrl_m3_shift5 (oligos_6nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=1/3; ncol2=24; w=0; offset=0; strand=D; shift=5; score= 1; -----aaAAAAaAAAAAAAAAAaAAAAaa ; cor=; Ncor= a 0 0 0 0 0 2787 3047 4235 4505 4618 4579 3405 4538 4757 4702 4692 3525 4553 4624 4717 4634 4486 3164 4516 4421 4395 4180 2992 2841 c 0 0 0 0 0 842 810 357 199 171 156 388 198 116 150 139 407 216 211 162 169 257 1171 216 230 217 278 717 796 g 0 0 0 0 0 523 519 216 177 143 163 1031 158 115 125 140 357 194 152 109 142 213 467 197 251 270 368 778 741 t 0 0 0 0 0 940 716 284 211 160 194 268 198 104 115 121 803 129 105 104 147 136 290 163 190 210 266 605 714
oligos_6nt_test_vs_ctrl_m1_shift5 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=2/3; ncol2=24; w=0; offset=0; strand=D; shift=5; score=0.784932; -----wwwAAAAwAAAAArAAAAttAtww ; cor=; Ncor= a 0 0 0 0 0 420 436 347 842 918 929 902 399 888 891 889 895 884 412 885 862 891 839 255 214 798 204 365 343 c 0 0 0 0 0 168 177 77 59 42 30 28 55 30 36 43 50 31 75 42 40 40 41 79 87 70 100 210 257 g 0 0 0 0 0 145 148 61 49 26 30 49 98 50 43 42 33 52 409 58 44 41 68 80 84 63 137 177 141 t 0 0 0 0 0 319 291 567 102 66 63 73 500 84 82 78 74 85 156 67 106 80 104 638 667 121 611 300 311
oligos_7nt_test_vs_ctrl_m3_shift0 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=3/3; ncol2=24; w=-5; offset=-5; strand=D; shift=0; score=0.537076; wwTttattAAArAAAAwAAAArwa----- ; cor=; Ncor= a 398 428 205 200 238 827 223 247 1038 1074 1124 446 1137 1143 1138 1139 353 1109 1135 1131 1092 399 525 560 0 0 0 0 0 c 244 291 113 159 128 147 118 89 87 87 33 113 45 38 49 60 104 70 55 70 44 151 235 220 0 0 0 0 0 g 208 225 117 150 116 123 101 102 75 88 88 614 75 60 60 66 114 81 70 64 93 573 223 249 0 0 0 0 0 t 510 416 925 851 878 263 918 922 160 111 115 187 103 119 113 95 789 100 100 95 131 237 377 331 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m5; m=0 (reference); ncol1=24; shift=0; ncol=24; wwtATAATTTAAtAAAAAAtAAww ; Alignment reference a 300 306 157 605 129 616 610 132 117 164 592 644 204 656 603 644 624 653 611 203 666 635 339 326 c 117 139 66 57 72 43 56 61 32 50 88 40 35 32 75 51 40 55 49 59 40 43 156 146 g 150 129 67 61 51 76 55 52 74 50 50 55 52 42 58 47 61 36 54 83 37 52 122 121 t 264 257 541 108 579 96 110 586 608 567 101 92 540 101 95 89 106 87 117 486 88 101 214 238
oligos_6nt_test_vs_ctrl_m5_shift0 (oligos_6nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=1/4; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; wwtATAATTTAAtAAAAAAtAAww ; cor=; Ncor= a 300 306 157 605 129 616 610 132 117 164 592 644 204 656 603 644 624 653 611 203 666 635 339 326 c 117 139 66 57 72 43 56 61 32 50 88 40 35 32 75 51 40 55 49 59 40 43 156 146 g 150 129 67 61 51 76 55 52 74 50 50 55 52 42 58 47 61 36 54 83 37 52 122 121 t 264 257 541 108 579 96 110 586 608 567 101 92 540 101 95 89 106 87 117 486 88 101 214 238
oligos_7nt_test_vs_ctrl_m5_shift0 (oligos_7nt_test_vs_ctrl_m5)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=2/4; ncol2=24; w=0; offset=0; strand=D; shift=0; score=0.803473; wwtAAAAtTTTAAAAAAAttAaww ; cor=; Ncor= a 459 422 230 861 878 830 878 233 166 201 196 935 903 939 926 933 860 942 244 259 824 766 437 443 c 165 222 94 76 93 90 76 86 50 55 86 49 83 60 79 51 75 59 69 74 96 112 220 221 g 189 180 79 92 69 85 71 60 70 71 55 59 66 58 49 67 82 47 84 101 83 121 171 182 t 364 353 774 148 137 172 152 798 891 850 840 134 125 120 123 126 160 129 780 743 174 178 349 331
oligos_7nt_test_vs_ctrl_m3_shift1 (oligos_7nt_test_vs_ctrl_m3)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m3; m=3/4; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.647851; -wwTttattAAArAAAAwAAAArw ; cor=; Ncor= a 0 398 428 205 200 238 827 223 247 1038 1074 1124 446 1137 1143 1138 1139 353 1109 1135 1131 1092 399 525 c 0 244 291 113 159 128 147 118 89 87 87 33 113 45 38 49 60 104 70 55 70 44 151 235 g 0 208 225 117 150 116 123 101 102 75 88 88 614 75 60 60 66 114 81 70 64 93 573 223 t 0 510 416 925 851 878 263 918 922 160 111 115 187 103 119 113 95 789 100 100 95 131 237 377
oligos_6nt_test_vs_ctrl_m1_shift5 (oligos_6nt_test_vs_ctrl_m1)				; oligos_6nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=4/4; ncol2=24; w=0; offset=5; strand=D; shift=5; score=0.475673; -----wwwAAAAwAAAAArAAAAt ; cor=; Ncor= a 0 0 0 0 0 420 436 347 842 918 929 902 399 888 891 889 895 884 412 885 862 891 839 255 c 0 0 0 0 0 168 177 77 59 42 30 28 55 30 36 43 50 31 75 42 40 40 41 79 g 0 0 0 0 0 145 148 61 49 26 30 49 98 50 43 42 33 52 409 58 44 41 68 80 t 0 0 0 0 0 319 291 567 102 66 63 73 500 84 82 78 74 85 156 67 106 80 104 638

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m3_shift5 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3; m=0 (reference); ncol1=24; shift=5; ncol=29; -----wwTttattAAArAAAAwAAAArwa ; Alignment reference a 0 0 0 0 0 398 428 205 200 238 827 223 247 1038 1074 1124 446 1137 1143 1138 1139 353 1109 1135 1131 1092 399 525 560 c 0 0 0 0 0 244 291 113 159 128 147 118 89 87 87 33 113 45 38 49 60 104 70 55 70 44 151 235 220 g 0 0 0 0 0 208 225 117 150 116 123 101 102 75 88 88 614 75 60 60 66 114 81 70 64 93 573 223 249 t 0 0 0 0 0 510 416 925 851 878 263 918 922 160 111 115 187 103 119 113 95 789 100 100 95 131 237 377 331
oligos_7nt_test_vs_ctrl_m3_shift5 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m3; m=1/6; ncol2=24; w=0; offset=0; strand=D; shift=5; score= 1; -----wwTttattAAArAAAAwAAAArwa ; cor=; Ncor= a 0 0 0 0 0 398 428 205 200 238 827 223 247 1038 1074 1124 446 1137 1143 1138 1139 353 1109 1135 1131 1092 399 525 560 c 0 0 0 0 0 244 291 113 159 128 147 118 89 87 87 33 113 45 38 49 60 104 70 55 70 44 151 235 220 g 0 0 0 0 0 208 225 117 150 116 123 101 102 75 88 88 614 75 60 60 66 114 81 70 64 93 573 223 249 t 0 0 0 0 0 510 416 925 851 878 263 918 922 160 111 115 187 103 119 113 95 789 100 100 95 131 237 377 331
oligos_6nt_test_vs_ctrl_m5_shift4 (oligos_6nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m5; m=2/6; ncol2=24; w=-1; offset=-1; strand=D; shift=4; score=0.647851; ----wwtATAATTTAAtAAAAAAtAAww- ; cor=; Ncor= a 0 0 0 0 300 306 157 605 129 616 610 132 117 164 592 644 204 656 603 644 624 653 611 203 666 635 339 326 0 c 0 0 0 0 117 139 66 57 72 43 56 61 32 50 88 40 35 32 75 51 40 55 49 59 40 43 156 146 0 g 0 0 0 0 150 129 67 61 51 76 55 52 74 50 50 55 52 42 58 47 61 36 54 83 37 52 122 121 0 t 0 0 0 0 264 257 541 108 579 96 110 586 608 567 101 92 540 101 95 89 106 87 117 486 88 101 214 238 0
oligos_6nt_test_vs_ctrl_m4_rc_shift3 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m4_rc; m=3/6; ncol2=24; w=-2; offset=-2; strand=R; shift=3; score=0.604864; ---wwTTTTcTTTAAArAAAAArtAwa-- ; cor=; Ncor= a 0 0 0 118 123 61 20 42 23 55 29 26 44 329 350 358 105 337 331 331 330 320 112 97 288 149 155 0 0 c 0 0 0 92 73 31 21 26 32 244 18 19 41 22 20 10 25 22 27 24 23 16 49 30 41 43 72 0 0 g 0 0 0 59 46 15 19 31 26 27 15 10 20 21 22 23 222 22 27 27 37 26 212 32 25 84 86 0 0 t 0 0 0 146 173 308 355 316 334 89 353 360 310 43 23 24 63 34 30 33 25 53 42 256 61 139 102 0 0
oligos_6nt_test_vs_ctrl_m1_shift9 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m1; m=4/6; ncol2=24; w=0; offset=4; strand=D; shift=9; score= 0.5558; ---------wwwAAAAwAAAAArAAAAtt ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 420 436 347 842 918 929 902 399 888 891 889 895 884 412 885 862 891 839 255 214 c 0 0 0 0 0 0 0 0 0 168 177 77 59 42 30 28 55 30 36 43 50 31 75 42 40 40 41 79 87 g 0 0 0 0 0 0 0 0 0 145 148 61 49 26 30 49 98 50 43 42 33 52 409 58 44 41 68 80 84 t 0 0 0 0 0 0 0 0 0 319 291 567 102 66 63 73 500 84 82 78 74 85 156 67 106 80 104 638 667
oligos_6nt_test_vs_ctrl_m3_shift10 (oligos_6nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_6nt_test_vs_ctrl_m3; m=5/6; ncol2=24; w=0; offset=5; strand=D; shift=10; score=0.537076; ----------aaAAAAaAAAAAAAAAAaA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2787 3047 4235 4505 4618 4579 3405 4538 4757 4702 4692 3525 4553 4624 4717 4634 4486 3164 4516 c 0 0 0 0 0 0 0 0 0 0 842 810 357 199 171 156 388 198 116 150 139 407 216 211 162 169 257 1171 216 g 0 0 0 0 0 0 0 0 0 0 523 519 216 177 143 163 1031 158 115 125 140 357 194 152 109 142 213 467 197 t 0 0 0 0 0 0 0 0 0 0 940 716 284 211 160 194 268 198 104 115 121 803 129 105 104 147 136 290 163
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m3 versus oligos_7nt_test_vs_ctrl_m2; m=6/6; ncol2=24; w=-5; offset=-5; strand=D; shift=0; score=0.483761; wwAAaATTTTTTTAAAAAAAttww----- ; cor=; Ncor= a 385 420 800 771 737 777 155 174 129 130 107 132 159 821 865 899 865 877 838 845 204 210 413 379 0 0 0 0 0 c 158 168 78 81 96 91 85 80 66 61 81 48 60 67 55 51 65 60 60 63 93 82 163 194 0 0 0 0 0 g 227 171 76 90 77 70 68 91 55 67 46 72 57 66 65 65 57 64 61 76 92 90 178 173 0 0 0 0 0 t 347 358 163 175 207 179 809 772 867 859 883 865 841 163 132 102 130 116 158 133 728 735 363 371 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m5_shift2 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m5; m=0 (reference); ncol1=24; shift=2; ncol=26; --wwtAAAAtTTTAAAAAAAttAaww ; Alignment reference a 0 0 459 422 230 861 878 830 878 233 166 201 196 935 903 939 926 933 860 942 244 259 824 766 437 443 c 0 0 165 222 94 76 93 90 76 86 50 55 86 49 83 60 79 51 75 59 69 74 96 112 220 221 g 0 0 189 180 79 92 69 85 71 60 70 71 55 59 66 58 49 67 82 47 84 101 83 121 171 182 t 0 0 364 353 774 148 137 172 152 798 891 850 840 134 125 120 123 126 160 129 780 743 174 178 349 331
oligos_7nt_test_vs_ctrl_m5_shift2 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m5; m=1/4; ncol2=24; w=0; offset=0; strand=D; shift=2; score= 1; --wwtAAAAtTTTAAAAAAAttAaww ; cor=; Ncor= a 0 0 459 422 230 861 878 830 878 233 166 201 196 935 903 939 926 933 860 942 244 259 824 766 437 443 c 0 0 165 222 94 76 93 90 76 86 50 55 86 49 83 60 79 51 75 59 69 74 96 112 220 221 g 0 0 189 180 79 92 69 85 71 60 70 71 55 59 66 58 49 67 82 47 84 101 83 121 171 182 t 0 0 364 353 774 148 137 172 152 798 891 850 840 134 125 120 123 126 160 129 780 743 174 178 349 331
oligos_6nt_test_vs_ctrl_m5_shift2 (oligos_6nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m5; m=2/4; ncol2=24; w=0; offset=0; strand=D; shift=2; score=0.803473; --wwtATAATTTAAtAAAAAAtAAww ; cor=; Ncor= a 0 0 300 306 157 605 129 616 610 132 117 164 592 644 204 656 603 644 624 653 611 203 666 635 339 326 c 0 0 117 139 66 57 72 43 56 61 32 50 88 40 35 32 75 51 40 55 49 59 40 43 156 146 g 0 0 150 129 67 61 51 76 55 52 74 50 50 55 52 42 58 47 61 36 54 83 37 52 122 121 t 0 0 264 257 541 108 579 96 110 586 608 567 101 92 540 101 95 89 106 87 117 486 88 101 214 238
oligos_6nt_test_vs_ctrl_m1_shift2 (oligos_6nt_test_vs_ctrl_m1)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_6nt_test_vs_ctrl_m1; m=3/4; ncol2=24; w=0; offset=0; strand=D; shift=2; score=0.741057; --wwwAAAAwAAAAArAAAAttAtww ; cor=; Ncor= a 0 0 420 436 347 842 918 929 902 399 888 891 889 895 884 412 885 862 891 839 255 214 798 204 365 343 c 0 0 168 177 77 59 42 30 28 55 30 36 43 50 31 75 42 40 40 41 79 87 70 100 210 257 g 0 0 145 148 61 49 26 30 49 98 50 43 42 33 52 409 58 44 41 68 80 84 63 137 177 141 t 0 0 319 291 567 102 66 63 73 500 84 82 78 74 85 156 67 106 80 104 638 667 121 611 300 311
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m5 versus oligos_7nt_test_vs_ctrl_m2; m=4/4; ncol2=24; w=-2; offset=-2; strand=D; shift=0; score=0.634323; wwAAaATTTTTTTAAAAAAAttww-- ; cor=; Ncor= a 385 420 800 771 737 777 155 174 129 130 107 132 159 821 865 899 865 877 838 845 204 210 413 379 0 0 c 158 168 78 81 96 91 85 80 66 61 81 48 60 67 55 51 65 60 60 63 93 82 163 194 0 0 g 227 171 76 90 77 70 68 91 55 67 46 72 57 66 65 65 57 64 61 76 92 90 178 173 0 0 t 347 358 163 175 207 179 809 772 867 859 883 865 841 163 132 102 130 116 158 133 728 735 363 371 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2; m=0 (reference); ncol1=24; shift=0; ncol=24; wwAAaATTTTTTTAAAAAAAttww ; Alignment reference a 385 420 800 771 737 777 155 174 129 130 107 132 159 821 865 899 865 877 838 845 204 210 413 379 c 158 168 78 81 96 91 85 80 66 61 81 48 60 67 55 51 65 60 60 63 93 82 163 194 g 227 171 76 90 77 70 68 91 55 67 46 72 57 66 65 65 57 64 61 76 92 90 178 173 t 347 358 163 175 207 179 809 772 867 859 883 865 841 163 132 102 130 116 158 133 728 735 363 371
oligos_7nt_test_vs_ctrl_m2_shift0 (oligos_7nt_test_vs_ctrl_m2)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m2; m=1/4; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; wwAAaATTTTTTTAAAAAAAttww ; cor=; Ncor= a 385 420 800 771 737 777 155 174 129 130 107 132 159 821 865 899 865 877 838 845 204 210 413 379 c 158 168 78 81 96 91 85 80 66 61 81 48 60 67 55 51 65 60 60 63 93 82 163 194 g 227 171 76 90 77 70 68 91 55 67 46 72 57 66 65 65 57 64 61 76 92 90 178 173 t 347 358 163 175 207 179 809 772 867 859 883 865 841 163 132 102 130 116 158 133 728 735 363 371
oligos_7nt_test_vs_ctrl_m5_shift2 (oligos_7nt_test_vs_ctrl_m5)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m5; m=2/4; ncol2=24; w=0; offset=2; strand=D; shift=2; score=0.634323; --wwtAAAAtTTTAAAAAAAttAa ; cor=; Ncor= a 0 0 459 422 230 861 878 830 878 233 166 201 196 935 903 939 926 933 860 942 244 259 824 766 c 0 0 165 222 94 76 93 90 76 86 50 55 86 49 83 60 79 51 75 59 69 74 96 112 g 0 0 189 180 79 92 69 85 71 60 70 71 55 59 66 58 49 67 82 47 84 101 83 121 t 0 0 364 353 774 148 137 172 152 798 891 850 840 134 125 120 123 126 160 129 780 743 174 178
oligos_6nt_test_vs_ctrl_m4_rc_shift3 (oligos_6nt_test_vs_ctrl_m4_rc)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4_rc; m=3/4; ncol2=24; w=0; offset=3; strand=R; shift=3; score=0.54798; ---wwTTTTcTTTAAArAAAAArt ; cor=; Ncor= a 0 0 0 118 123 61 20 42 23 55 29 26 44 329 350 358 105 337 331 331 330 320 112 97 c 0 0 0 92 73 31 21 26 32 244 18 19 41 22 20 10 25 22 27 24 23 16 49 30 g 0 0 0 59 46 15 19 31 26 27 15 10 20 21 22 23 222 22 27 27 37 26 212 32 t 0 0 0 146 173 308 355 316 334 89 353 360 310 43 23 24 63 34 30 33 25 53 42 256
oligos_7nt_test_vs_ctrl_m3_shift5 (oligos_7nt_test_vs_ctrl_m3)				; oligos_7nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m3; m=4/4; ncol2=24; w=0; offset=5; strand=D; shift=5; score=0.483761; -----wwTttattAAArAAAAwAA ; cor=; Ncor= a 0 0 0 0 0 398 428 205 200 238 827 223 247 1038 1074 1124 446 1137 1143 1138 1139 353 1109 1135 c 0 0 0 0 0 244 291 113 159 128 147 118 89 87 87 33 113 45 38 49 60 104 70 55 g 0 0 0 0 0 208 225 117 150 116 123 101 102 75 88 88 614 75 60 60 66 114 81 70 t 0 0 0 0 0 510 416 925 851 878 263 918 922 160 111 115 187 103 119 113 95 789 100 100

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m4_shift6 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4; m=0 (reference); ncol1=24; shift=6; ncol=30; ------twTayTTTTTyTTTAAAgAAAAww ; Alignment reference a 0 0 0 0 0 0 102 139 61 256 42 53 25 33 30 34 63 24 23 43 310 360 353 89 334 316 355 308 173 146 c 0 0 0 0 0 0 86 84 25 32 212 26 37 27 27 22 222 23 22 21 20 10 15 27 26 31 19 15 46 59 g 0 0 0 0 0 0 72 43 41 30 49 16 23 24 27 22 25 10 20 22 41 19 18 244 32 26 21 31 73 92 t 0 0 0 0 0 0 155 149 288 97 112 320 330 331 331 337 105 358 350 329 44 26 29 55 23 42 20 61 123 118
oligos_6nt_test_vs_ctrl_m4_shift6 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m4; m=1/5; ncol2=24; w=0; offset=0; strand=D; shift=6; score= 1; ------twTayTTTTTyTTTAAAgAAAAww ; cor=; Ncor= a 0 0 0 0 0 0 102 139 61 256 42 53 25 33 30 34 63 24 23 43 310 360 353 89 334 316 355 308 173 146 c 0 0 0 0 0 0 86 84 25 32 212 26 37 27 27 22 222 23 22 21 20 10 15 27 26 31 19 15 46 59 g 0 0 0 0 0 0 72 43 41 30 49 16 23 24 27 22 25 10 20 22 41 19 18 244 32 26 21 31 73 92 t 0 0 0 0 0 0 155 149 288 97 112 320 330 331 331 337 105 358 350 329 44 26 29 55 23 42 20 61 123 118
oligos_7nt_test_vs_ctrl_m3_rc_shift4 (oligos_7nt_test_vs_ctrl_m3_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m3_rc; m=2/5; ncol2=24; w=-2; offset=-2; strand=R; shift=4; score=0.604864; ----twyTTTTwTTTTyTTTaataaAww-- ; cor=; Ncor= a 0 0 0 0 331 377 237 131 95 100 100 789 95 113 119 103 187 115 111 160 922 918 263 878 851 925 416 510 0 0 c 0 0 0 0 249 223 573 93 64 70 81 114 66 60 60 75 614 88 88 75 102 101 123 116 150 117 225 208 0 0 g 0 0 0 0 220 235 151 44 70 55 70 104 60 49 38 45 113 33 87 87 89 118 147 128 159 113 291 244 0 0 t 0 0 0 0 560 525 399 1092 1131 1135 1109 353 1139 1138 1143 1137 446 1124 1074 1038 247 223 827 238 200 205 428 398 0 0
oligos_7nt_test_vs_ctrl_m2_rc_shift9 (oligos_7nt_test_vs_ctrl_m2_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_7nt_test_vs_ctrl_m2_rc; m=3/5; ncol2=24; w=0; offset=3; strand=R; shift=9; score=0.54798; ---------wwaaTTTTTTTAAAAAAATtT ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 371 363 735 728 133 158 116 130 102 132 163 841 865 883 859 867 772 809 179 207 175 c 0 0 0 0 0 0 0 0 0 173 178 90 92 76 61 64 57 65 65 66 57 72 46 67 55 91 68 70 77 90 g 0 0 0 0 0 0 0 0 0 194 163 82 93 63 60 60 65 51 55 67 60 48 81 61 66 80 85 91 96 81 t 0 0 0 0 0 0 0 0 0 379 413 210 204 845 838 877 865 899 865 821 159 132 107 130 129 174 155 777 737 771
oligos_6nt_test_vs_ctrl_m2_shift13 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m2; m=4/5; ncol2=17; w=0; offset=7; strand=D; shift=13; score=0.496837; -------------wwTcTTAAAAgTAATww ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 0 563 532 155 216 144 137 1569 1700 1768 1672 327 258 1554 1546 251 584 709 c 0 0 0 0 0 0 0 0 0 0 0 0 0 388 449 126 1230 100 127 129 81 76 51 137 154 165 135 125 387 393 g 0 0 0 0 0 0 0 0 0 0 0 0 0 394 375 84 141 37 175 108 93 76 101 1345 148 130 149 129 447 303 t 0 0 0 0 0 0 0 0 0 0 0 0 0 666 655 1646 424 1730 1572 205 137 91 187 202 1451 162 181 1506 593 606
oligos_6nt_test_vs_ctrl_m1_rc_shift0 (oligos_6nt_test_vs_ctrl_m1_rc)				; oligos_6nt_test_vs_ctrl_m4 versus oligos_6nt_test_vs_ctrl_m1_rc; m=5/5; ncol2=24; w=-6; offset=-6; strand=R; shift=0; score=0.429205; wwaTaaTTTTyTTTTTwTTTTwww------ ; cor=; Ncor= a 311 300 611 121 667 638 104 80 106 67 156 85 74 78 82 84 500 73 63 66 102 567 291 319 0 0 0 0 0 0 c 141 177 137 63 84 80 68 41 44 58 409 52 33 42 43 50 98 49 30 26 49 61 148 145 0 0 0 0 0 0 g 257 210 100 70 87 79 41 40 40 42 75 31 50 43 36 30 55 28 30 42 59 77 177 168 0 0 0 0 0 0 t 343 365 204 798 214 255 839 891 862 885 412 884 895 889 891 888 399 902 929 918 842 347 436 420 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_test_vs_ctrl_m2_shift7 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2; m=0 (reference); ncol1=17; shift=7; ncol=24; -------wwTcTTAAAAgTAATww ; Alignment reference a 0 0 0 0 0 0 0 563 532 155 216 144 137 1569 1700 1768 1672 327 258 1554 1546 251 584 709 c 0 0 0 0 0 0 0 388 449 126 1230 100 127 129 81 76 51 137 154 165 135 125 387 393 g 0 0 0 0 0 0 0 394 375 84 141 37 175 108 93 76 101 1345 148 130 149 129 447 303 t 0 0 0 0 0 0 0 666 655 1646 424 1730 1572 205 137 91 187 202 1451 162 181 1506 593 606
oligos_6nt_test_vs_ctrl_m2_shift7 (oligos_6nt_test_vs_ctrl_m2)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m2; m=1/3; ncol2=17; w=0; offset=0; strand=D; shift=7; score= 1; -------wwTcTTAAAAgTAATww ; cor=; Ncor= a 0 0 0 0 0 0 0 563 532 155 216 144 137 1569 1700 1768 1672 327 258 1554 1546 251 584 709 c 0 0 0 0 0 0 0 388 449 126 1230 100 127 129 81 76 51 137 154 165 135 125 387 393 g 0 0 0 0 0 0 0 394 375 84 141 37 175 108 93 76 101 1345 148 130 149 129 447 303 t 0 0 0 0 0 0 0 666 655 1646 424 1730 1572 205 137 91 187 202 1451 162 181 1506 593 606
oligos_6nt_test_vs_ctrl_m4_shift0 (oligos_6nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_6nt_test_vs_ctrl_m4; m=2/3; ncol2=24; w=-7; offset=-7; strand=D; shift=0; score=0.496837; twTayTTTTTyTTTAAAgAAAAww ; cor=; Ncor= a 102 139 61 256 42 53 25 33 30 34 63 24 23 43 310 360 353 89 334 316 355 308 173 146 c 86 84 25 32 212 26 37 27 27 22 222 23 22 21 20 10 15 27 26 31 19 15 46 59 g 72 43 41 30 49 16 23 24 27 22 25 10 20 22 41 19 18 244 32 26 21 31 73 92 t 155 149 288 97 112 320 330 331 331 337 105 358 350 329 44 26 29 55 23 42 20 61 123 118
oligos_7nt_test_vs_ctrl_m4_shift14 (oligos_7nt_test_vs_ctrl_m4)				; oligos_6nt_test_vs_ctrl_m2 versus oligos_7nt_test_vs_ctrl_m4; m=3/3; ncol2=11; w=0; offset=7; strand=D; shift=14; score=0.443887; --------------wmAGTAATAw ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3360 3182 9305 861 1128 8930 9316 770 8812 3237 c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1770 2527 58 325 467 433 180 444 279 1868 g 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2218 2101 288 8296 630 407 258 477 427 2306 t 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2740 2278 437 606 7863 318 334 8397 570 2677