peak-motifs p53

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=29.08; evalue=8.3e-30

skrGrCATGYCCrGrCATGyCyms

SKRGRCATGYCYGGRCATGYCYMS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 498 (64.34%)
Max nb of predicted sites per peak: 6
(chromosome_GRCh38_19_1_58617616_1:53295167-53295524())
Mean nb of predicted sites per peak: 2.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=12.65; evalue=2.2e-13

yrgaCAAGTCys

SRGACTTGTCYR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 229 (29.59%)
Max nb of predicted sites per peak: 4
(chromosome_GRCh38_6_1_170805979_1:80536210-80536681())
Mean nb of predicted sites per peak: 1.43

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=23.20; evalue=6.3e-24

cyrGACATGTCyrg

CYRGACATGTCYRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 295 (38.11%)
Max nb of predicted sites per peak: 6
(chromosome_GRCh38_9_1_138394717_1:112144743-112145168())
Mean nb of predicted sites per peak: 2.38

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=6.62; evalue=2.4e-07

waCAAAGAAAaa

TTTTTCTTTGTW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 122 (15.76%)
Max nb of predicted sites per peak: 9
(chromosome_GRCh38_9_1_138394717_1:92800309-92800628())
Mean nb of predicted sites per peak: 1.34

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=6.09; evalue=8.1e-07

rwAAGGAAggrw

WYCCTTCCTTWY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 106 (13.70%)
Max nb of predicted sites per peak: 4
(chromosome_GRCh38_20_1_64444167_1:47377126-47377527())
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=29.38; evalue=4.2e-30

ycyrGACATGCCCagrc

GYCTGGGCATGTCYRGR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 430 (55.56%)
Max nb of predicted sites per peak: 14
(chromosome_GRCh38_2_1_242193529_1:1488761-1489456())
Mean nb of predicted sites per peak: 1.84

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=29.38; evalue=4.2e-30

crrACATGCCCagrc

GYCTGGGCATGTYYG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 443 (57.24%)
Max nb of predicted sites per peak: 14
(chromosome_GRCh38_2_1_242193529_1:1488761-1489456())
Mean nb of predicted sites per peak: 1.57

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=29.38; evalue=4.2e-30

gyccrGACATGCCCagrc

GYCTGGGCATGTCYGGRC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 431 (55.68%)
Max nb of predicted sites per peak: 13
(chromosome_GRCh38_2_1_242193529_1:1488761-1489456())
Mean nb of predicted sites per peak: 1.97

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=28.52; evalue=3e-29

yctgGRCATGYCcagr

YCTGGRCATGYCCAGR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 326 (42.12%)
Max nb of predicted sites per peak: 6
(chromosome_GRCh38_7_1_159345973_1:121511151-121511380())
Mean nb of predicted sites per peak: 2.36

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=29.38; evalue=4.2e-30

cyrGGCATGTCyagr

YCTRGACATGCCYRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 381 (49.22%)
Max nb of predicted sites per peak: 13
(chromosome_GRCh38_2_1_242193529_1:1488761-1489456())
Mean nb of predicted sites per peak: 1.86

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv4_m1

k-mer sig=13.81; evalue=1.5e-14

skgGACATGCCCAGrCawG

CWTGYCTGGGCATGTCCMS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 485 (62.66%)
Max nb of predicted sites per peak: 6
(chromosome_GRCh38_19_1_58617616_1:53295167-53295524())
Mean nb of predicted sites per peak: 1.89

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv4_m2

k-mer sig=5.16; evalue=6.9e-06

tgCCCAGACAtg

CATGTCTGGGCA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 299 (38.63%)
Max nb of predicted sites per peak: 3
(chromosome_GRCh38_3_1_198295559_1:42823377-42823772())
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv4_m3

k-mer sig=3.76; evalue=0.00017

yrGACAAGTCyv

BRGACTTGTCYR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 239 (30.88%)
Max nb of predicted sites per peak: 4
(chromosome_GRCh38_8_1_145138636_1:123612323-123612699())
Mean nb of predicted sites per peak: 1.58

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv4_m4

k-mer sig=3.03; evalue=0.00093

grCAaGCCCrs

SYGGGCTTGYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 282 (36.43%)
Max nb of predicted sites per peak: 11
(chromosome_GRCh38_2_1_242193529_1:1488761-1489456())
Mean nb of predicted sites per peak: 1.35

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv4_m5

k-mer sig=1.65; evalue=0.022

srGACwTGCCyr

YRGGCAWGTCYS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 283 (36.56%)
Max nb of predicted sites per peak: 4
(chromosome_GRCh38_7_1_159345973_1:33287804-33288289())
Mean nb of predicted sites per peak: 1.46

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=22.99; evalue=1e-23

yccaGACATGCCCagrc

GYCTGGGCATGTCTGGR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 416 (53.75%)
Max nb of predicted sites per peak: 15
(chromosome_GRCh38_2_1_242193529_1:1488761-1489456())
Mean nb of predicted sites per peak: 1.79

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=22.99; evalue=1e-23

gyctGGGCATGTCyrs

SYRGACATGCCCAGRC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 437 (56.46%)
Max nb of predicted sites per peak: 13
(chromosome_GRCh38_2_1_242193529_1:1488761-1489456())
Mean nb of predicted sites per peak: 1.71

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=8.60; evalue=2.5e-09

yyCAGACATGTCTGrr

YYCAGACATGTCTGRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 226 (29.20%)
Max nb of predicted sites per peak: 6
(chromosome_GRCh38_7_1_159345973_1:121511151-121511380())
Mean nb of predicted sites per peak: 2.38

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=22.99; evalue=1e-23

cyrGGCATGTCTggr

YCCAGACATGCCYRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 358 (46.25%)
Max nb of predicted sites per peak: 11
(chromosome_GRCh38_2_1_242193529_1:1488761-1489456())
Mean nb of predicted sites per peak: 1.75

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

k-mer sig=11.81; evalue=1.5e-12

gyctGGGCATGCCCagrc

GYCTGGGCATGCCCAGRC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 304 (39.28%)
Max nb of predicted sites per peak: 9
(chromosome_GRCh38_13_1_114364328_1:20362637-20362922())
Mean nb of predicted sites per peak: 2.40

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: p53 (25/11/2025 23:18)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results