position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.203955_2025-11-26.203955_uGowT0/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title RSAT_Peak_sequences_-_ZBT24vsEmpty -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.203955_2025-11-26.203955_uGowT0/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.203955_2025-11-26.203955_uGowT0/data/sequences/peak-motifs_ctrl_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.203955_2025-11-26.203955_uGowT0/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab Oligo length 2 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 2343 Sum of sequence lengths 749171 Min sequence length 0 Max sequence length 1000 Average sequence length 319 Possible positions 746828 Oligonucleotide statistics: Total occurrences 382341 Position interval parameters: Position interval 20 Number of windows 50 Total positions 746828 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 76 1453 2 -24 [-479,-460] -469.5 87 1618 3 -23 [-459,-440] -449.5 93 1812 4 -22 [-439,-420] -429.5 98 1896 5 -21 [-419,-400] -409.5 114 2122 6 -20 [-399,-380] -389.5 126 2437 7 -19 [-379,-360] -369.5 146 2728 8 -18 [-359,-340] -349.5 169 3119 9 -17 [-339,-320] -329.5 200 3776 10 -16 [-319,-300] -309.5 226 4256 11 -15 [-299,-280] -289.5 259 4852 12 -14 [-279,-260] -269.5 297 5533 13 -13 [-259,-240] -249.5 363 6674 14 -12 [-239,-220] -229.5 448 8220 15 -11 [-219,-200] -209.5 537 9806 16 -10 [-199,-180] -189.5 650 11898 17 -9 [-179,-160] -169.5 807 14696 18 -8 [-159,-140] -149.5 995 18105 19 -7 [-139,-120] -129.5 1236 22266 20 -6 [-119,-100] -109.5 1560 28011 21 -5 [-99,-80] -89.5 1959 35127 22 -4 [-79,-60] -69.5 2343 44725 23 -3 [-59,-40] -49.5 2343 46860 24 -2 [-39,-20] -29.5 2343 46860 25 -1 [-19,0] -9.5 2343 46860 26 0 [1,20] 10.5 2343 46860 27 1 [21,40] 30.5 2343 46860 28 2 [41,60] 50.5 2343 46860 29 3 [61,80] 70.5 2343 43963 30 4 [81,100] 90.5 1930 34310 31 5 [101,120] 110.5 1535 27354 32 6 [121,140] 130.5 1212 21781 33 7 [141,160] 150.5 982 17727 34 8 [161,180] 170.5 794 14407 35 9 [181,200] 190.5 640 11672 36 10 [201,220] 210.5 527 9636 37 11 [221,240] 230.5 443 8056 38 12 [241,260] 250.5 360 6546 39 13 [261,280] 270.5 294 5462 40 14 [281,300] 290.5 255 4787 41 15 [301,320] 310.5 223 4203 42 16 [321,340] 330.5 198 3709 43 17 [341,360] 350.5 165 3073 44 18 [361,380] 370.5 146 2691 45 19 [381,400] 390.5 126 2412 46 20 [401,420] 410.5 112 2090 47 21 [421,440] 430.5 97 1887 48 22 [441,460] 450.5 93 1799 49 23 [461,480] 470.5 86 1597 50 24 [481,500] 490.5 75 1376 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| gc | gc | 30659 | 2520.2 | 49 | 0.0e+00 | 0 | 300 | 1 | 22 | 28 | 26 | 25 | 39 | 41 | 41 | 40 | 64 | 82 | 87 | 119 | 161 | 198 | 249 | 343 | 459 | 609 | 796 | 1126 | 1601 | 2164 | 2371 | 2425 | 2347 | 2354 | 2408 | 2310 | 2256 | 1594 | 1061 | 737 | 592 | 455 | 310 | 250 | 209 | 150 | 101 | 73 | 55 | 60 | 39 | 31 | 32 | 28 | 27 | 33 | 20 | 11 |
| gg | gg | 36640 | 2504.7 | 49 | 0.0e+00 | 0 | 300 | 2 | 46 | 27 | 29 | 35 | 39 | 53 | 50 | 76 | 67 | 97 | 104 | 135 | 231 | 300 | 354 | 435 | 584 | 772 | 991 | 1418 | 2079 | 2700 | 2818 | 2789 | 2696 | 2728 | 2671 | 2825 | 2505 | 1731 | 1269 | 932 | 734 | 539 | 345 | 295 | 243 | 202 | 119 | 78 | 87 | 68 | 56 | 61 | 51 | 40 | 43 | 47 | 20 | 26 |
| cc | cc | 36232 | 2110.5 | 49 | 0.0e+00 | 0 | 300 | 3 | 25 | 53 | 45 | 37 | 40 | 45 | 82 | 67 | 73 | 101 | 120 | 164 | 202 | 247 | 292 | 412 | 563 | 734 | 1011 | 1387 | 1767 | 2572 | 2772 | 2673 | 2646 | 2684 | 2655 | 2623 | 2594 | 1872 | 1384 | 932 | 798 | 539 | 448 | 295 | 276 | 221 | 173 | 136 | 93 | 73 | 63 | 54 | 56 | 37 | 26 | 30 | 13 | 27 |
| ag | ag | 28574 | 1734.9 | 49 | 0.0e+00 | 0 | 300 | 4 | 31 | 19 | 18 | 22 | 32 | 43 | 36 | 56 | 65 | 81 | 89 | 118 | 166 | 228 | 290 | 368 | 453 | 640 | 860 | 1174 | 1581 | 2028 | 2093 | 2049 | 2025 | 2170 | 2108 | 2136 | 1968 | 1385 | 1019 | 761 | 604 | 441 | 291 | 249 | 212 | 136 | 85 | 77 | 73 | 69 | 49 | 42 | 35 | 33 | 19 | 20 | 11 | 16 |
| ca | ca | 26790 | 1593.9 | 49 | 0.0e+00 | 0 | 300 | 5 | 16 | 22 | 25 | 24 | 29 | 26 | 41 | 36 | 56 | 76 | 79 | 96 | 160 | 206 | 237 | 306 | 420 | 593 | 726 | 1057 | 1390 | 1854 | 2041 | 1948 | 1945 | 1993 | 1914 | 1944 | 1890 | 1390 | 1022 | 706 | 608 | 437 | 312 | 274 | 205 | 160 | 123 | 83 | 68 | 53 | 51 | 32 | 32 | 28 | 13 | 19 | 12 | 12 |
| cg | cg | 17598 | 1585.4 | 49 | 0.0e+00 | 0 | 300 | 6 | 20 | 19 | 17 | 25 | 29 | 31 | 27 | 37 | 38 | 51 | 47 | 72 | 93 | 99 | 126 | 188 | 258 | 325 | 453 | 584 | 937 | 1297 | 1416 | 1446 | 1360 | 1377 | 1385 | 1353 | 1287 | 877 | 591 | 399 | 297 | 219 | 140 | 137 | 110 | 93 | 65 | 42 | 36 | 32 | 22 | 21 | 21 | 21 | 31 | 24 | 13 | 10 |
| ct | ct | 28363 | 1534.3 | 49 | 0.0e+00 | 0 | 300 | 7 | 20 | 37 | 37 | 28 | 24 | 36 | 56 | 52 | 61 | 62 | 93 | 122 | 166 | 210 | 239 | 348 | 474 | 662 | 749 | 1048 | 1469 | 2015 | 2021 | 2059 | 2111 | 1986 | 2143 | 2074 | 1908 | 1493 | 1078 | 808 | 606 | 469 | 362 | 286 | 220 | 160 | 127 | 79 | 77 | 58 | 53 | 42 | 32 | 25 | 17 | 22 | 20 | 19 |
| tg | tg | 27178 | 1444.2 | 49 | 0.0e+00 | 0 | 300 | 8 | 23 | 29 | 31 | 31 | 36 | 37 | 58 | 52 | 67 | 61 | 94 | 109 | 169 | 228 | 251 | 345 | 478 | 627 | 834 | 1146 | 1502 | 1938 | 1931 | 2032 | 2070 | 1924 | 1954 | 1957 | 1725 | 1300 | 948 | 719 | 561 | 437 | 346 | 245 | 217 | 156 | 94 | 88 | 57 | 63 | 37 | 50 | 31 | 16 | 15 | 24 | 21 | 14 |
| ga | ga | 24171 | 1228.1 | 49 | 0.0e+00 | 0 | 300 | 9 | 33 | 25 | 17 | 21 | 33 | 36 | 37 | 62 | 58 | 61 | 81 | 103 | 139 | 204 | 243 | 303 | 396 | 535 | 726 | 984 | 1288 | 1713 | 1761 | 1692 | 1725 | 1791 | 1735 | 1784 | 1657 | 1153 | 883 | 671 | 547 | 375 | 267 | 203 | 182 | 138 | 78 | 72 | 72 | 63 | 42 | 52 | 35 | 24 | 24 | 17 | 13 | 17 |
| tc | tc | 23816 | 1161.0 | 49 | 0.0e+00 | 0 | 300 | 10 | 19 | 25 | 34 | 30 | 29 | 35 | 51 | 51 | 58 | 55 | 73 | 109 | 142 | 191 | 197 | 281 | 417 | 551 | 668 | 923 | 1246 | 1759 | 1707 | 1723 | 1682 | 1703 | 1743 | 1734 | 1561 | 1185 | 878 | 683 | 518 | 380 | 275 | 241 | 186 | 155 | 129 | 69 | 57 | 44 | 55 | 39 | 36 | 24 | 15 | 17 | 15 | 18 |
| ac | ac | 18278 | 983.7 | 49 | 0.0e+00 | 0 | 300 | 11 | 20 | 23 | 21 | 18 | 17 | 16 | 35 | 32 | 36 | 59 | 63 | 69 | 115 | 151 | 167 | 217 | 304 | 422 | 513 | 707 | 985 | 1340 | 1404 | 1278 | 1374 | 1351 | 1287 | 1281 | 1238 | 898 | 675 | 472 | 388 | 265 | 217 | 185 | 133 | 111 | 85 | 54 | 60 | 40 | 34 | 22 | 23 | 18 | 19 | 13 | 10 | 13 |
| gt | gt | 18446 | 961.7 | 49 | 0.0e+00 | 0 | 300 | 12 | 15 | 19 | 22 | 26 | 25 | 33 | 39 | 44 | 45 | 45 | 57 | 75 | 112 | 149 | 162 | 237 | 305 | 432 | 587 | 766 | 996 | 1371 | 1334 | 1366 | 1342 | 1346 | 1336 | 1350 | 1130 | 872 | 646 | 502 | 366 | 268 | 224 | 163 | 147 | 115 | 78 | 60 | 39 | 39 | 31 | 35 | 21 | 15 | 16 | 17 | 13 | 13 |
| aa | aa | 19898 | 926.0 | 49 | 0.0e+00 | 0 | 300 | 13 | 27 | 25 | 32 | 14 | 16 | 25 | 31 | 21 | 42 | 46 | 79 | 73 | 154 | 168 | 223 | 280 | 379 | 481 | 650 | 838 | 1115 | 1354 | 1487 | 1449 | 1435 | 1365 | 1342 | 1318 | 1279 | 976 | 679 | 602 | 446 | 342 | 230 | 190 | 144 | 115 | 80 | 58 | 62 | 53 | 34 | 44 | 14 | 32 | 16 | 3 | 13 | 17 |
| tt | tt | 19829 | 802.0 | 49 | 0.0e+00 | 0 | 300 | 14 | 22 | 27 | 29 | 36 | 22 | 26 | 45 | 42 | 56 | 49 | 69 | 89 | 150 | 149 | 193 | 209 | 378 | 435 | 553 | 809 | 929 | 1373 | 1366 | 1359 | 1388 | 1380 | 1434 | 1437 | 1287 | 1044 | 801 | 611 | 430 | 386 | 267 | 216 | 171 | 118 | 87 | 92 | 47 | 46 | 51 | 28 | 25 | 15 | 13 | 8 | 20 | 12 |
| at | at | 15006 | 567.7 | 49 | 0.0e+00 | 0 | 300 | 15 | 29 | 11 | 19 | 14 | 19 | 15 | 28 | 28 | 52 | 39 | 50 | 67 | 101 | 127 | 158 | 188 | 289 | 347 | 501 | 664 | 768 | 996 | 1005 | 1071 | 1061 | 1053 | 1043 | 991 | 986 | 741 | 564 | 437 | 348 | 263 | 200 | 154 | 138 | 109 | 63 | 57 | 38 | 34 | 31 | 34 | 23 | 12 | 13 | 10 | 8 | 9 |
| ta | ta | 10863 | 436.0 | 49 | 0.0e+00 | 0 | 300 | 16 | 23 | 11 | 17 | 9 | 7 | 13 | 16 | 20 | 37 | 41 | 34 | 49 | 76 | 85 | 129 | 144 | 206 | 283 | 363 | 453 | 570 | 727 | 725 | 737 | 801 | 763 | 801 | 709 | 706 | 526 | 424 | 311 | 211 | 178 | 142 | 117 | 100 | 66 | 35 | 44 | 33 | 22 | 25 | 19 | 10 | 12 | 12 | 9 | 6 | 6 |
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