position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.203955_2025-11-26.203955_uGowT0/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title RSAT_Peak_sequences_-_ZBT24vsEmpty -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.203955_2025-11-26.203955_uGowT0/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.203955_2025-11-26.203955_uGowT0/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.203955_2025-11-26.203955_uGowT0/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 16516 Sum of sequence lengths 4971759 Min sequence length 0 Max sequence length 1000 Average sequence length 301 Possible positions 4971759 Oligonucleotide statistics: Total occurrences 4450023 Position interval parameters: Position interval 20 Number of windows 50 Total positions 4971759 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 414 7874 2 -24 [-479,-460] -469.5 457 8738 3 -23 [-459,-440] -449.5 529 9848 4 -22 [-439,-420] -429.5 604 11332 5 -21 [-419,-400] -409.5 683 13006 6 -20 [-399,-380] -389.5 778 14656 7 -19 [-379,-360] -369.5 901 16803 8 -18 [-359,-340] -349.5 1031 19322 9 -17 [-339,-320] -329.5 1207 22421 10 -16 [-319,-300] -309.5 1397 26195 11 -15 [-299,-280] -289.5 1620 30179 12 -14 [-279,-260] -269.5 1922 35645 13 -13 [-259,-240] -249.5 2304 42560 14 -12 [-239,-220] -229.5 2742 50748 15 -11 [-219,-200] -209.5 3278 60632 16 -10 [-199,-180] -189.5 3974 72624 17 -9 [-179,-160] -169.5 4982 89363 18 -8 [-159,-140] -149.5 6169 111806 19 -7 [-139,-120] -129.5 7490 136905 20 -6 [-119,-100] -109.5 9532 169554 21 -5 [-99,-80] -89.5 13850 231585 22 -4 [-79,-60] -69.5 16516 321164 23 -3 [-59,-40] -49.5 16516 330320 24 -2 [-39,-20] -29.5 16516 330320 25 -1 [-19,0] -9.5 16516 330320 26 0 [1,20] 10.5 16516 330320 27 1 [21,40] 30.5 16516 330320 28 2 [41,60] 50.5 16516 330320 29 3 [61,80] 70.5 16516 318488 30 4 [81,100] 90.5 13548 227215 31 5 [101,120] 110.5 9383 167546 32 6 [121,140] 130.5 7416 135625 33 7 [141,160] 150.5 6107 110630 34 8 [161,180] 170.5 4916 88319 35 9 [181,200] 190.5 3927 71944 36 10 [201,220] 210.5 3238 60097 37 11 [221,240] 230.5 2725 50340 38 12 [241,260] 250.5 2282 42198 39 13 [261,280] 270.5 1903 35342 40 14 [281,300] 290.5 1601 29940 41 15 [301,320] 310.5 1388 26007 42 16 [321,340] 330.5 1195 22255 43 17 [341,360] 350.5 1026 19212 44 18 [361,380] 370.5 896 16680 45 19 [381,400] 390.5 773 14560 46 20 [401,420] 410.5 676 12926 47 21 [421,440] 430.5 597 11250 48 22 [441,460] 450.5 527 9783 49 23 [461,480] 470.5 453 8692 50 24 [481,500] 490.5 412 7830 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 1130462 | 1664.2 | 49 | 0.0e+00 | 0 | 300 | 1 | 1632 | 1757 | 2018 | 2338 | 2610 | 3017 | 3466 | 4095 | 4679 | 5624 | 6354 | 7950 | 9312 | 11125 | 13505 | 16629 | 20403 | 25622 | 31217 | 40139 | 56404 | 77500 | 76359 | 75897 | 75009 | 75153 | 75296 | 75414 | 72369 | 52087 | 37797 | 30653 | 25147 | 19547 | 15725 | 13136 | 10836 | 8920 | 7325 | 6250 | 5439 | 4532 | 3883 | 3347 | 2930 | 2588 | 2202 | 1914 | 1697 | 1614 |
| c | c | 1130613 | 1514.3 | 49 | 0.0e+00 | 0 | 300 | 2 | 1734 | 1868 | 2079 | 2298 | 2809 | 3088 | 3459 | 3981 | 4767 | 5397 | 6381 | 7408 | 9130 | 10988 | 13012 | 15709 | 19920 | 24780 | 31021 | 38418 | 53429 | 73119 | 75167 | 75129 | 75289 | 75223 | 75396 | 76647 | 77197 | 54919 | 39151 | 31383 | 25420 | 20498 | 16245 | 13227 | 10981 | 9210 | 7677 | 6413 | 5471 | 4628 | 3951 | 3395 | 2983 | 2540 | 2244 | 1989 | 1769 | 1676 |
| a | a | 1093907 | 700.0 | 49 | 0.0e+00 | 0 | 300 | 3 | 1807 | 2071 | 2288 | 2599 | 2867 | 3126 | 3765 | 4229 | 4971 | 5767 | 6697 | 7823 | 9398 | 11004 | 13284 | 15838 | 19611 | 24793 | 30089 | 36919 | 50563 | 72365 | 74608 | 74340 | 74477 | 74388 | 74375 | 72968 | 68860 | 48397 | 35702 | 29175 | 23833 | 19003 | 15330 | 12716 | 10691 | 8942 | 7418 | 6168 | 5452 | 4607 | 3939 | 3424 | 2968 | 2659 | 2297 | 1919 | 1752 | 1625 |
| t | t | 1095041 | 517.9 | 49 | 0.0e+00 | 0 | 300 | 4 | 1807 | 1920 | 2127 | 2538 | 2810 | 3210 | 3657 | 4206 | 4852 | 5673 | 6557 | 7722 | 9351 | 11319 | 13159 | 15457 | 19091 | 24313 | 29800 | 36385 | 49257 | 69293 | 73005 | 73742 | 74722 | 74337 | 74184 | 74573 | 71706 | 49727 | 36997 | 29994 | 24388 | 19069 | 15687 | 12996 | 10936 | 9251 | 7628 | 6419 | 5440 | 4833 | 4086 | 3466 | 2934 | 2726 | 2285 | 1947 | 1796 | 1663 |
Host name rsat Job started 2025-11-26.204041 Job done 2025-11-26.204105 Seconds 23.98 user 23.99 system 0.01 cuser 0 ; csystem 0