position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204211_2025-11-26.204211_jXQ2u1/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title zbtb24 -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204211_2025-11-26.204211_jXQ2u1/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204211_2025-11-26.204211_jXQ2u1/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204211_2025-11-26.204211_jXQ2u1/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab Oligo length 2 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 16516 Sum of sequence lengths 4971759 Min sequence length 0 Max sequence length 1000 Average sequence length 301 Possible positions 4955243 Oligonucleotide statistics: Total occurrences 4431587 Position interval parameters: Position interval 20 Number of windows 50 Total positions 4955243 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 414 7874 2 -24 [-479,-460] -469.5 457 8738 3 -23 [-459,-440] -449.5 529 9848 4 -22 [-439,-420] -429.5 604 11332 5 -21 [-419,-400] -409.5 683 13006 6 -20 [-399,-380] -389.5 778 14656 7 -19 [-379,-360] -369.5 901 16803 8 -18 [-359,-340] -349.5 1031 19322 9 -17 [-339,-320] -329.5 1207 22421 10 -16 [-319,-300] -309.5 1397 26195 11 -15 [-299,-280] -289.5 1620 30179 12 -14 [-279,-260] -269.5 1922 35645 13 -13 [-259,-240] -249.5 2304 42560 14 -12 [-239,-220] -229.5 2742 50748 15 -11 [-219,-200] -209.5 3278 60632 16 -10 [-199,-180] -189.5 3974 72624 17 -9 [-179,-160] -169.5 4982 89363 18 -8 [-159,-140] -149.5 6169 111806 19 -7 [-139,-120] -129.5 7490 136905 20 -6 [-119,-100] -109.5 9532 169554 21 -5 [-99,-80] -89.5 13850 231585 22 -4 [-79,-60] -69.5 16516 321164 23 -3 [-59,-40] -49.5 16516 330320 24 -2 [-39,-20] -29.5 16516 330320 25 -1 [-19,0] -9.5 16516 330320 26 0 [1,20] 10.5 16516 330320 27 1 [21,40] 30.5 16516 330320 28 2 [41,60] 50.5 16516 330320 29 3 [61,80] 70.5 16516 315520 30 4 [81,100] 90.5 13406 223050 31 5 [101,120] 110.5 9321 165579 32 6 [121,140] 130.5 7375 134316 33 7 [141,160] 150.5 6080 109439 34 8 [161,180] 170.5 4884 87330 35 9 [181,200] 190.5 3910 71255 36 10 [201,220] 210.5 3229 59584 37 11 [221,240] 230.5 2714 49897 38 12 [241,260] 250.5 2274 41819 39 13 [261,280] 270.5 1894 35040 40 14 [281,300] 290.5 1596 29727 41 15 [301,320] 310.5 1381 25814 42 16 [321,340] 330.5 1193 22086 43 17 [341,360] 350.5 1022 19082 44 18 [361,380] 370.5 893 16557 45 19 [381,400] 390.5 770 14463 46 20 [401,420] 410.5 675 12847 47 21 [421,440] 430.5 595 11180 48 22 [441,460] 450.5 525 9709 49 23 [461,480] 470.5 451 8651 50 24 [481,500] 490.5 412 7418 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| gg | gg | 350319 | 1160.5 | 49 | 0.0e+00 | 0 | 300 | 1 | 504 | 499 | 588 | 695 | 753 | 872 | 987 | 1222 | 1406 | 1755 | 1884 | 2519 | 2878 | 3399 | 4224 | 5361 | 6535 | 8081 | 9764 | 12916 | 18381 | 24584 | 23971 | 23537 | 22884 | 23082 | 23129 | 23189 | 21997 | 16194 | 11625 | 9577 | 7826 | 5947 | 4692 | 3917 | 3258 | 2588 | 2172 | 1890 | 1660 | 1343 | 1172 | 995 | 874 | 776 | 650 | 580 | 504 | 483 |
| cc | cc | 349611 | 968.5 | 49 | 0.0e+00 | 0 | 300 | 2 | 486 | 554 | 603 | 671 | 830 | 920 | 1036 | 1170 | 1418 | 1605 | 1899 | 2179 | 2801 | 3378 | 3926 | 4868 | 6219 | 7691 | 9620 | 11964 | 16637 | 22456 | 23373 | 22984 | 22939 | 23155 | 23121 | 23978 | 24458 | 17515 | 12091 | 9869 | 7885 | 6314 | 5060 | 4152 | 3301 | 2768 | 2445 | 1962 | 1696 | 1378 | 1229 | 1050 | 915 | 738 | 721 | 613 | 505 | 465 |
| aa | aa | 318394 | 959.5 | 49 | 0.0e+00 | 0 | 300 | 3 | 563 | 675 | 738 | 848 | 845 | 899 | 1164 | 1267 | 1511 | 1728 | 2070 | 2384 | 2763 | 3269 | 3870 | 4646 | 5773 | 7526 | 8841 | 10598 | 14166 | 21720 | 22620 | 22297 | 22153 | 22078 | 22006 | 21408 | 18809 | 12728 | 9954 | 8180 | 6742 | 5227 | 4325 | 3649 | 3042 | 2546 | 2147 | 1736 | 1590 | 1290 | 1155 | 1048 | 859 | 786 | 672 | 539 | 502 | 442 |
| tt | tt | 318452 | 657.0 | 49 | 0.0e+00 | 0 | 300 | 4 | 545 | 529 | 608 | 760 | 859 | 981 | 1063 | 1212 | 1442 | 1705 | 1940 | 2267 | 2716 | 3351 | 3915 | 4444 | 5482 | 6966 | 8681 | 10188 | 13066 | 19242 | 21316 | 21961 | 22076 | 22139 | 22174 | 22265 | 20748 | 13917 | 10606 | 8710 | 7110 | 5487 | 4561 | 3808 | 3282 | 2739 | 2270 | 1907 | 1625 | 1487 | 1300 | 1066 | 831 | 841 | 703 | 556 | 551 | 454 |
| ct | ct | 338414 | 566.5 | 49 | 0.0e+00 | 0 | 300 | 5 | 558 | 578 | 625 | 731 | 848 | 952 | 1062 | 1270 | 1444 | 1655 | 1954 | 2250 | 2770 | 3321 | 3811 | 4556 | 5911 | 7327 | 9113 | 11157 | 15598 | 21614 | 22357 | 22705 | 22943 | 22569 | 22674 | 23043 | 23238 | 16274 | 12033 | 9363 | 7505 | 6130 | 4873 | 3957 | 3391 | 2817 | 2239 | 2038 | 1616 | 1414 | 1162 | 1011 | 883 | 779 | 632 | 602 | 544 | 517 |
| gc | gc | 284137 | 489.2 | 49 | 0.0e+00 | 0 | 300 | 6 | 398 | 432 | 500 | 573 | 642 | 744 | 848 | 1028 | 1161 | 1339 | 1585 | 1904 | 2337 | 2772 | 3340 | 4019 | 5067 | 6269 | 7856 | 10126 | 14294 | 19195 | 18975 | 18802 | 18767 | 18791 | 18695 | 19082 | 18772 | 13413 | 9756 | 7717 | 6271 | 5154 | 4070 | 3299 | 2781 | 2341 | 1881 | 1626 | 1291 | 1147 | 977 | 863 | 729 | 641 | 534 | 495 | 453 | 385 |
| cg | cg | 130242 | 481.9 | 49 | 0.0e+00 | 0 | 300 | 7 | 148 | 163 | 198 | 220 | 277 | 337 | 337 | 400 | 488 | 570 | 697 | 871 | 1040 | 1282 | 1514 | 1927 | 2275 | 2949 | 3736 | 4856 | 6581 | 8787 | 8769 | 8679 | 8489 | 8524 | 8657 | 8770 | 8549 | 6216 | 4561 | 3654 | 2992 | 2281 | 1826 | 1542 | 1230 | 1005 | 855 | 691 | 622 | 487 | 422 | 376 | 316 | 264 | 249 | 217 | 195 | 151 |
| ta | ta | 179114 | 475.3 | 49 | 0.0e+00 | 0 | 300 | 8 | 300 | 352 | 365 | 470 | 480 | 536 | 666 | 744 | 858 | 994 | 1111 | 1332 | 1704 | 1978 | 2210 | 2690 | 3113 | 4017 | 4867 | 5913 | 7647 | 10965 | 12419 | 12336 | 12780 | 12634 | 12510 | 12104 | 10680 | 7386 | 5781 | 4776 | 3729 | 3043 | 2556 | 2146 | 1813 | 1546 | 1295 | 1091 | 897 | 823 | 672 | 569 | 486 | 448 | 407 | 319 | 305 | 251 |
| ag | ag | 337374 | 470.7 | 49 | 0.0e+00 | 0 | 300 | 9 | 517 | 575 | 652 | 738 | 841 | 911 | 1096 | 1281 | 1479 | 1723 | 2039 | 2365 | 2827 | 3315 | 4133 | 5063 | 6260 | 7613 | 9426 | 11842 | 17110 | 23202 | 22762 | 22735 | 22616 | 22712 | 22773 | 22324 | 21123 | 14993 | 10805 | 8810 | 7305 | 5809 | 4687 | 3912 | 3274 | 2658 | 2152 | 1864 | 1630 | 1368 | 1184 | 1003 | 869 | 770 | 689 | 559 | 532 | 448 |
| at | at | 214317 | 380.5 | 49 | 8.0e-53 | 1.3e-51 | 50.89 | 10 | 351 | 444 | 467 | 535 | 576 | 670 | 773 | 883 | 996 | 1186 | 1341 | 1601 | 2003 | 2347 | 2673 | 3082 | 3741 | 4878 | 5701 | 7062 | 9182 | 13410 | 14702 | 14746 | 14991 | 14918 | 14802 | 14580 | 13087 | 8987 | 6881 | 5800 | 4649 | 3640 | 3014 | 2489 | 2105 | 1843 | 1549 | 1273 | 1091 | 967 | 827 | 694 | 628 | 573 | 486 | 422 | 351 | 320 |
| tc | tc | 278580 | 282.4 | 49 | 1.5e-34 | 2.4e-33 | 32.62 | 11 | 492 | 522 | 544 | 605 | 734 | 786 | 866 | 1023 | 1214 | 1374 | 1687 | 1871 | 2319 | 2793 | 3275 | 3889 | 4983 | 6196 | 7661 | 9323 | 13193 | 17874 | 18386 | 18615 | 18912 | 18662 | 18755 | 19079 | 18867 | 12803 | 9440 | 7705 | 6286 | 4797 | 3891 | 3186 | 2708 | 2253 | 1825 | 1591 | 1322 | 1170 | 1000 | 812 | 728 | 638 | 551 | 495 | 462 | 417 |
| tg | tg | 310971 | 276.7 | 49 | 1.6e-33 | 2.6e-32 | 31.59 | 12 | 465 | 516 | 609 | 698 | 737 | 905 | 1059 | 1225 | 1332 | 1594 | 1815 | 2241 | 2608 | 3183 | 3742 | 4422 | 5497 | 7111 | 8563 | 10931 | 15301 | 21159 | 20840 | 20792 | 20902 | 20854 | 20706 | 21093 | 20025 | 13706 | 10265 | 8267 | 6735 | 5308 | 4368 | 3640 | 2931 | 2535 | 2113 | 1722 | 1503 | 1290 | 1064 | 957 | 845 | 764 | 592 | 538 | 465 | 438 |
| ga | ga | 277542 | 268.3 | 49 | 5.3e-32 | 8.5e-31 | 30.07 | 13 | 392 | 457 | 518 | 575 | 688 | 779 | 914 | 1037 | 1160 | 1432 | 1611 | 1957 | 2301 | 2678 | 3300 | 4060 | 4951 | 6255 | 7549 | 9540 | 13177 | 18941 | 18787 | 18949 | 18751 | 18608 | 18859 | 18579 | 17603 | 12767 | 9184 | 7410 | 6173 | 4744 | 3845 | 3279 | 2680 | 2192 | 1781 | 1542 | 1408 | 1101 | 966 | 833 | 732 | 655 | 576 | 476 | 415 | 375 |
| ca | ca | 310873 | 249.3 | 49 | 1.3e-28 | 2e-27 | 26.70 | 14 | 535 | 572 | 652 | 673 | 850 | 877 | 1020 | 1138 | 1415 | 1564 | 1822 | 2102 | 2515 | 3001 | 3749 | 4344 | 5497 | 6794 | 8528 | 10410 | 14570 | 20206 | 20624 | 20718 | 20877 | 20926 | 20896 | 20830 | 20798 | 14718 | 10385 | 8409 | 6964 | 5717 | 4447 | 3539 | 3032 | 2604 | 2119 | 1709 | 1519 | 1340 | 1125 | 949 | 865 | 756 | 638 | 551 | 524 | 460 |
| ac | ac | 216562 | 213.9 | 49 | 1.7e-22 | 2.8e-21 | 20.55 | 15 | 371 | 376 | 427 | 474 | 601 | 642 | 731 | 793 | 978 | 1124 | 1240 | 1468 | 1796 | 2061 | 2594 | 3031 | 3820 | 4755 | 6097 | 7384 | 10055 | 13952 | 14483 | 14521 | 14660 | 14626 | 14736 | 14610 | 14611 | 9967 | 7257 | 5857 | 4668 | 3934 | 3021 | 2457 | 2115 | 1747 | 1440 | 1212 | 1077 | 904 | 720 | 637 | 571 | 496 | 420 | 377 | 350 | 318 |
| gt | gt | 216685 | 178.3 | 49 | 1.4e-16 | 2.2e-15 | 14.65 | 16 | 335 | 367 | 410 | 491 | 522 | 616 | 714 | 804 | 951 | 1091 | 1269 | 1565 | 1785 | 2261 | 2633 | 3174 | 3837 | 5002 | 6024 | 7525 | 10494 | 14715 | 14578 | 14554 | 14553 | 14626 | 14573 | 14533 | 13811 | 9471 | 7108 | 5843 | 4789 | 3621 | 3072 | 2591 | 2076 | 1766 | 1463 | 1173 | 1067 | 926 | 757 | 646 | 589 | 504 | 438 | 357 | 322 | 293 |
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