position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204313_2025-11-26.204313_HfPHmA/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title empty -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204313_2025-11-26.204313_HfPHmA/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204313_2025-11-26.204313_HfPHmA/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204313_2025-11-26.204313_HfPHmA/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 2343 Sum of sequence lengths 749171 Min sequence length 0 Max sequence length 1000 Average sequence length 319 Possible positions 749171 Oligonucleotide statistics: Total occurrences 384851 Position interval parameters: Position interval 20 Number of windows 50 Total positions 749171 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 76 1453 2 -24 [-479,-460] -469.5 87 1618 3 -23 [-459,-440] -449.5 93 1812 4 -22 [-439,-420] -429.5 98 1896 5 -21 [-419,-400] -409.5 114 2122 6 -20 [-399,-380] -389.5 126 2437 7 -19 [-379,-360] -369.5 146 2728 8 -18 [-359,-340] -349.5 169 3119 9 -17 [-339,-320] -329.5 200 3776 10 -16 [-319,-300] -309.5 226 4256 11 -15 [-299,-280] -289.5 259 4852 12 -14 [-279,-260] -269.5 297 5533 13 -13 [-259,-240] -249.5 363 6674 14 -12 [-239,-220] -229.5 448 8220 15 -11 [-219,-200] -209.5 537 9806 16 -10 [-199,-180] -189.5 650 11898 17 -9 [-179,-160] -169.5 807 14696 18 -8 [-159,-140] -149.5 995 18105 19 -7 [-139,-120] -129.5 1236 22266 20 -6 [-119,-100] -109.5 1560 28011 21 -5 [-99,-80] -89.5 1959 35127 22 -4 [-79,-60] -69.5 2343 44725 23 -3 [-59,-40] -49.5 2343 46860 24 -2 [-39,-20] -29.5 2343 46860 25 -1 [-19,0] -9.5 2343 46860 26 0 [1,20] 10.5 2343 46860 27 1 [21,40] 30.5 2343 46860 28 2 [41,60] 50.5 2343 46860 29 3 [61,80] 70.5 2343 44365 30 4 [81,100] 90.5 1941 34710 31 5 [101,120] 110.5 1541 27676 32 6 [121,140] 130.5 1219 22012 33 7 [141,160] 150.5 988 17916 34 8 [161,180] 170.5 799 14562 35 9 [181,200] 190.5 644 11785 36 10 [201,220] 210.5 531 9723 37 11 [221,240] 230.5 444 8139 38 12 [241,260] 250.5 361 6611 39 13 [261,280] 270.5 296 5501 40 14 [281,300] 290.5 257 4820 41 15 [301,320] 310.5 224 4229 42 16 [321,340] 330.5 198 3740 43 17 [341,360] 350.5 167 3094 44 18 [361,380] 370.5 146 2711 45 19 [381,400] 390.5 126 2425 46 20 [401,420] 410.5 113 2105 47 21 [421,440] 430.5 98 1892 48 22 [441,460] 450.5 93 1806 49 23 [461,480] 470.5 86 1608 50 24 [481,500] 490.5 75 1451 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 110316 | 7020.8 | 49 | 0.0e+00 | 0 | 300 | 1 | 118 | 99 | 95 | 108 | 137 | 164 | 169 | 224 | 234 | 286 | 330 | 436 | 647 | 856 | 1015 | 1323 | 1749 | 2354 | 3110 | 4305 | 5982 | 7965 | 8304 | 8289 | 8128 | 8238 | 8158 | 8280 | 7591 | 5389 | 3891 | 2857 | 2253 | 1653 | 1153 | 919 | 786 | 609 | 378 | 286 | 253 | 232 | 168 | 181 | 142 | 108 | 110 | 114 | 68 | 72 |
| c | c | 109332 | 6586.7 | 49 | 0.0e+00 | 0 | 300 | 2 | 85 | 131 | 124 | 114 | 123 | 139 | 207 | 194 | 229 | 294 | 341 | 454 | 622 | 773 | 899 | 1258 | 1719 | 2320 | 2950 | 4086 | 5575 | 7751 | 8266 | 8144 | 8079 | 8059 | 8112 | 8001 | 7711 | 5659 | 4095 | 2860 | 2329 | 1674 | 1266 | 996 | 814 | 640 | 493 | 344 | 276 | 216 | 191 | 151 | 144 | 111 | 87 | 95 | 58 | 73 |
| a | a | 82645 | 3938.1 | 49 | 0.0e+00 | 0 | 300 | 3 | 107 | 79 | 95 | 68 | 84 | 102 | 132 | 140 | 196 | 229 | 284 | 327 | 541 | 678 | 841 | 1061 | 1433 | 1899 | 2533 | 3392 | 4464 | 5725 | 6011 | 5863 | 5911 | 5961 | 5796 | 5739 | 5611 | 4130 | 3053 | 2337 | 1846 | 1346 | 967 | 796 | 649 | 490 | 321 | 258 | 237 | 198 | 151 | 146 | 99 | 100 | 68 | 48 | 44 | 59 |
| t | t | 82558 | 3619.4 | 49 | 0.0e+00 | 0 | 300 | 4 | 87 | 94 | 112 | 106 | 94 | 111 | 172 | 165 | 219 | 207 | 271 | 357 | 540 | 654 | 773 | 982 | 1484 | 1901 | 2426 | 3348 | 4265 | 5811 | 5749 | 5865 | 5955 | 5789 | 5950 | 5849 | 5413 | 4194 | 3159 | 2401 | 1766 | 1431 | 1065 | 836 | 687 | 514 | 358 | 298 | 201 | 180 | 173 | 138 | 103 | 70 | 57 | 60 | 64 | 54 |
Host name rsat Job started 2025-11-26.204334 Job done 2025-11-26.204337 Seconds 3.75 user 3.75 system 0.03 cuser 0 ; csystem 0