One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DrosophilaTFs/DrosophilaTFs_2015-11-06.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_DrosophilaTFs
One-to-n matrix alignment; reference matrix: dyads_m3_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m3_shift0 (dyads_m3) |
 |
|
|
; dyads_m3; m=0 (reference); ncol1=14; shift=0; ncol=14; agCAGCAGCAGCag
; Alignment reference
a 3023 732 205 4256 205 120 4427 196 120 4310 275 188 3102 833
c 572 721 4047 152 229 4354 108 164 4365 138 232 4152 534 744
g 704 2845 257 245 4149 96 157 4245 93 192 4045 171 729 2643
t 468 469 258 114 184 197 75 162 189 127 215 256 402 547
|
| 4933_Adf1_DrosophilaTF_1.1__rc_shift0 (4933_Adf1_DrosophilaTF_1.1__rc) |
 |
|
|
; dyads_m3 versus 4933_Adf1_DrosophilaTF_1.1__rc; m=1/1; ncol2=12; w=0; offset=0; strand=R; shift=0; score=0.705504; drCrGmrGsAGC--
; cor=; Ncor=
a 33 50 0 50 0 50 50 0 0 1 0 0 0 0
c 0 0 1 0 0 50 0 0 50 0 0 1 0 0
g 33 50 0 50 1 0 50 1 50 0 1 0 0 0
t 34 0 0 0 0 0 0 0 0 0 0 0 0 0
|