One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/dyads_m6/peak-motifs_dyads_m6.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DrosophilaTFs/DrosophilaTFs_2015-11-06.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/dyads_m6/peak-motifs_dyads_m6_vs_db_DrosophilaTFs
One-to-n matrix alignment; reference matrix: dyads_m6_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m6_shift0 (dyads_m6) |
 |
|
|
; dyads_m6; m=0 (reference); ncol1=13; shift=0; ncol=13; camACACACAyac
; Alignment reference
a 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393
c 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939
g 346 362 48 33 15 30 21 19 24 30 98 415 351
t 345 270 144 44 38 9 44 18 47 52 1805 344 355
|
| 4983_sd_DrosophilaTF_1.1__rc_shift5 (4983_sd_DrosophilaTF_1.1__rc) |
 |
|
|
; dyads_m6 versus 4983_sd_DrosophilaTF_1.1__rc; m=1/1; ncol2=9; w=0; offset=5; strand=R; shift=5; score=0.437052; -----AnAmATny
; cor=; Ncor=
a 0 0 0 0 0 1 25 1 50 1 0 25 0
c 0 0 0 0 0 0 25 0 50 0 0 25 50
g 0 0 0 0 0 0 25 0 0 0 0 25 0
t 0 0 0 0 0 0 25 0 0 0 1 25 50
|