One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DrosophilaTFs/DrosophilaTFs_2015-11-06.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_6nt_mkv4_m1/peak-motifs_oligos_6nt_mkv4_m1_vs_db_DrosophilaTFs
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m1_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv4_m1_shift0 (oligos_6nt_mkv4_m1) |
 |
|
|
; oligos_6nt_mkv4_m1; m=0 (reference); ncol1=11; shift=0; ncol=11; cycCCACAAmm
; Alignment reference
a 354 335 306 0 2 1250 50 1267 1364 427 379
c 516 530 804 1437 1382 94 1304 72 17 444 541
g 254 207 179 0 16 42 44 36 33 264 277
t 320 372 155 7 44 58 46 69 30 309 247
|
| 4934_Aef1_DrosophilaTF_1.1__shift3 (4934_Aef1_DrosophilaTF_1.1_) |
 |
|
|
; oligos_6nt_mkv4_m1 versus 4934_Aef1_DrosophilaTF_1.1_; m=1/1; ncol2=6; w=0; offset=3; strand=D; shift=3; score=0.415469; ---CAACAA--
; cor=; Ncor=
a 0 0 0 0 1 1 0 1 1 0 0
c 0 0 0 1 0 0 1 0 0 0 0
g 0 0 0 0 0 0 0 0 0 0 0
t 0 0 0 0 0 0 0 0 0 0 0
|