/var/www/html/rsat/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4_vs_db_FlyFactorSurvey.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4_vs_db_FlyFactorSurvey
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4.tf
	file2 	$RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4_vs_db_FlyFactorSurvey_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4_vs_db_FlyFactorSurvey_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4_vs_db_FlyFactorSurvey_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4_vs_db_FlyFactorSurvey.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4_vs_db_FlyFactorSurvey.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4_vs_db_FlyFactorSurvey
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_6nt_mkv4_m4/peak-motifs_oligos_6nt_mkv4_m4.tf
		file1	1	11	1588
	file2	652 matrices	$RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf
		file2		1		21		20
		file2		2		26		461
		file2		3		8		37
		file2		4		8		7
		file2		5		7		18
		file2		6		8		662
		file2		7		9		21
		file2		8		8		2704
		file2		9		8		19
		file2		10		8		19
		file2		11		7		23
		...	642 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv4_m4 lola-PQ_SANGER_5_FBgn0005630 oligos_6nt_mkv4_m4 lola-PQ_SANGER_5_FBgn0005630 0.856 0.701 11 9 9 11 0.8182 0.8182 1.0000 D 0
oligos_6nt_mkv4_m4 lola-PQ_SOLEXA_FBgn0005630 oligos_6nt_mkv4_m4 lola-PQ_SOLEXA_FBgn0005630 0.814 0.597 11 15 11 15 0.7333 1.0000 0.7333 R -2
oligos_6nt_mkv4_m4 Side_SANGER_5_FBgn0032741 oligos_6nt_mkv4_m4 Side_SANGER_5_FBgn0032741 0.712 0.594 11 11 10 12 0.8333 0.9091 0.9091 D 1
oligos_6nt_mkv4_m4 sage_da_SANGER_5_FBgn0037672 oligos_6nt_mkv4_m4 sage_da_SANGER_5_FBgn0037672 0.712 0.594 11 11 10 12 0.8333 0.9091 0.9091 D 1
oligos_6nt_mkv4_m4 sage_da_SANGER_5_FBgn0000413 oligos_6nt_mkv4_m4 sage_da_SANGER_5_FBgn0000413 0.712 0.594 11 11 10 12 0.8333 0.9091 0.9091 D 1
oligos_6nt_mkv4_m4 lola-PF_SANGER_5_FBgn0005630 oligos_6nt_mkv4_m4 lola-PF_SANGER_5_FBgn0005630 0.763 0.572 11 10 9 12 0.7500 0.8182 0.9000 D 2
oligos_6nt_mkv4_m4 CG5953_SANGER_5_FBgn0032587 oligos_6nt_mkv4_m4 CG5953_SANGER_5_FBgn0032587 0.785 0.571 11 8 8 11 0.7273 0.7273 1.0000 D 0
oligos_6nt_mkv4_m4 lola-PF_SOLEXA_FBgn0005630 oligos_6nt_mkv4_m4 lola-PF_SOLEXA_FBgn0005630 0.764 0.560 11 15 11 15 0.7333 1.0000 0.7333 R 0
oligos_6nt_mkv4_m4 bin_SANGER_5_FBgn0045759 oligos_6nt_mkv4_m4 bin_SANGER_5_FBgn0045759 0.850 0.541 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_6nt_mkv4_m4 Mirr_Cell_FBgn0014343 oligos_6nt_mkv4_m4 Mirr_Cell_FBgn0014343 0.918 0.536 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_6nt_mkv4_m4 fd64A_SANGER_5_FBgn0004895 oligos_6nt_mkv4_m4 fd64A_SANGER_5_FBgn0004895 0.915 0.534 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_6nt_mkv4_m4 slp2_SANGER_5_FBgn0004567 oligos_6nt_mkv4_m4 slp2_SANGER_5_FBgn0004567 0.713 0.519 11 8 8 11 0.7273 0.7273 1.0000 D 0
oligos_6nt_mkv4_m4 HLH4C_da_SANGER_5_FBgn0011277 oligos_6nt_mkv4_m4 HLH4C_da_SANGER_5_FBgn0011277 0.705 0.517 11 15 11 15 0.7333 1.0000 0.7333 D 0
oligos_6nt_mkv4_m4 HLH4C_da_SANGER_5_FBgn0000413 oligos_6nt_mkv4_m4 HLH4C_da_SANGER_5_FBgn0000413 0.705 0.517 11 15 11 15 0.7333 1.0000 0.7333 D 0
oligos_6nt_mkv4_m4 Ara_Cell_FBgn0015904 oligos_6nt_mkv4_m4 Ara_Cell_FBgn0015904 0.878 0.512 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_6nt_mkv4_m4 Caup_Cell_FBgn0015919 oligos_6nt_mkv4_m4 Caup_Cell_FBgn0015919 0.861 0.502 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_6nt_mkv4_m4 Mirr_SOLEXA_FBgn0014343 oligos_6nt_mkv4_m4 Mirr_SOLEXA_FBgn0014343 0.887 0.484 11 6 6 11 0.5455 0.5455 1.0000 D 1
oligos_6nt_mkv4_m4 Ara_SOLEXA_FBgn0015904 oligos_6nt_mkv4_m4 Ara_SOLEXA_FBgn0015904 0.880 0.480 11 6 6 11 0.5455 0.5455 1.0000 D 1
oligos_6nt_mkv4_m4 foxo_SANGER_10_FBgn0038197 oligos_6nt_mkv4_m4 foxo_SANGER_10_FBgn0038197 0.886 0.477 11 9 7 13 0.5385 0.6364 0.7778 R -2
oligos_6nt_mkv4_m4 slp1_NAR_FBgn0003430 oligos_6nt_mkv4_m4 slp1_NAR_FBgn0003430 0.820 0.469 11 11 8 14 0.5714 0.7273 0.7273 R -3
oligos_6nt_mkv4_m4 CG16899_SANGER_5_FBgn0037735 oligos_6nt_mkv4_m4 CG16899_SANGER_5_FBgn0037735 0.702 0.468 11 9 8 12 0.6667 0.7273 0.8889 D -1
oligos_6nt_mkv4_m4 Caup_SOLEXA_FBgn0015919 oligos_6nt_mkv4_m4 Caup_SOLEXA_FBgn0015919 0.852 0.465 11 6 6 11 0.5455 0.5455 1.0000 D 1
oligos_6nt_mkv4_m4 CG11617_SOLEXA_FBgn0031232 oligos_6nt_mkv4_m4 CG11617_SOLEXA_FBgn0031232 0.780 0.455 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_6nt_mkv4_m4 ac_da_SANGER_5_FBgn0000022 oligos_6nt_mkv4_m4 ac_da_SANGER_5_FBgn0000022 0.741 0.432 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_6nt_mkv4_m4 ac_da_SANGER_5_FBgn0000413 oligos_6nt_mkv4_m4 ac_da_SANGER_5_FBgn0000413 0.741 0.432 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_6nt_mkv4_m4 sc_da_SANGER_10_FBgn0004170 oligos_6nt_mkv4_m4 sc_da_SANGER_10_FBgn0004170 0.726 0.424 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_6nt_mkv4_m4 sc_da_SANGER_10_FBgn0000413 oligos_6nt_mkv4_m4 sc_da_SANGER_10_FBgn0000413 0.726 0.424 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_6nt_mkv4_m4 fkh_NAR_FBgn0000659 oligos_6nt_mkv4_m4 fkh_NAR_FBgn0000659 0.903 0.421 11 11 7 15 0.4667 0.6364 0.6364 R -4
oligos_6nt_mkv4_m4 HLH54F_da_SANGER_5_FBgn0022740 oligos_6nt_mkv4_m4 HLH54F_da_SANGER_5_FBgn0022740 0.729 0.417 11 11 8 14 0.5714 0.7273 0.7273 D 3
oligos_6nt_mkv4_m4 HLH54F_da_SANGER_5_FBgn0000413 oligos_6nt_mkv4_m4 HLH54F_da_SANGER_5_FBgn0000413 0.729 0.417 11 11 8 14 0.5714 0.7273 0.7273 D 3
oligos_6nt_mkv4_m4 CG31782-F9-11_SOLEXA_FBgn0051782 oligos_6nt_mkv4_m4 CG31782-F9-11_SOLEXA_FBgn0051782 0.702 0.401 11 11 8 14 0.5714 0.7273 0.7273 R 3 
 Host name	rsat
 Job started	2025-11-26.210106
 Job done	2025-11-26.210112
 Seconds	0.51
	user	0.51
	system	0.2
	cuser	4.29
;	csystem	0.69