One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_6nt_mkv4_m5/peak-motifs_oligos_6nt_mkv4_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_6nt_mkv4_m5/peak-motifs_oligos_6nt_mkv4_m5_vs_db_FlyFactorSurvey
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m5_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv4_m5_shift0 (oligos_6nt_mkv4_m5) |
 |
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; oligos_6nt_mkv4_m5; m=0 (reference); ncol1=16; shift=0; ncol=16; gtsTGTGyGTGTsTgt
; Alignment reference
a 214 180 62 30 40 21 22 21 20 16 41 12 98 13 202 129
c 294 260 792 62 50 39 43 1077 48 32 62 38 611 57 217 297
g 895 280 760 38 1580 14 1604 24 1593 23 1556 28 898 67 1041 211
t 294 977 83 1567 27 1623 28 575 36 1626 38 1619 90 1560 237 1060
|
| klu_SANGER_10_FBgn0013469_shift5 (klu_SANGER_10_FBgn0013469) |
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; oligos_6nt_mkv4_m5 versus klu_SANGER_10_FBgn0013469; m=1/1; ncol2=11; w=0; offset=5; strand=D; shift=5; score=0.491536; -----tGyGkGGGTGk
; cor=; Ncor=
a 0 0 0 0 0 2 3 1 0 0 1 0 0 2 0 0
c 0 0 0 0 0 2 0 10 0 0 0 0 0 0 0 2
g 0 0 0 0 0 2 16 0 20 7 19 20 20 0 20 11
t 0 0 0 0 0 12 0 9 0 13 0 0 0 18 0 7
|