One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m1_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv5_m1_shift0 (oligos_7nt_mkv5_m1) |
 |
|
|
; oligos_7nt_mkv5_m1; m=0 (reference); ncol1=11; shift=0; ncol=11; maAACACAAmm
; Alignment reference
a 623 573 1802 1747 96 1720 81 1680 1767 555 640
c 544 437 1 22 1609 67 1586 57 20 518 599
g 384 449 28 54 61 58 114 51 39 350 326
t 329 421 49 57 114 35 99 92 54 457 315
|
| eve_shift4 (eve) |
 |
|
|
; oligos_7nt_mkv5_m1 versus eve; m=1/1; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.42504; ----mACaaTw
; cor=; Ncor=
a 0 0 0 0 8 18 1 13 13 0 9
c 0 0 0 0 9 0 16 3 0 1 1
g 0 0 0 0 3 2 0 4 3 0 1
t 0 0 0 0 0 0 3 0 4 19 9
|