compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_FlyFactorSurvey Program version 1.118 Quick mode Input files file2 $RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1.tf Output files html_index $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_FlyFactorSurvey_index.html alignments_1ton $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_FlyFactorSurvey_alignments_1ton.tab alignments_1ton_html $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_FlyFactorSurvey_alignments_1ton.html prefix $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_FlyFactorSurvey match_table_html $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_FlyFactorSurvey.html match_table_txt $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1_vs_db_FlyFactorSurvey.tab Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_7nt_mkv5_m1/peak-motifs_oligos_7nt_mkv5_m1.tf file1 1 11 1880 file2 652 matrices $RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf file2 1 21 20 file2 2 26 461 file2 3 8 37 file2 4 8 7 file2 5 7 18 file2 6 8 662 file2 7 9 21 file2 8 8 2704 file2 9 8 19 file2 10 8 19 file2 11 7 23 ... 642 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_7nt_mkv5_m1 | CG10267_SANGER_5_FBgn0037446 | oligos_7nt_mkv5_m1 | CG10267_SANGER_5_FBgn0037446 | 0.754 | 0.565 | 11 | 10 | 9 | 12 | 0.7500 | 0.8182 | 0.9000 | D | -1 |
| oligos_7nt_mkv5_m1 | lola-PJ_SOLEXA_FBgn0005630 | oligos_7nt_mkv5_m1 | lola-PJ_SOLEXA_FBgn0005630 | 0.740 | 0.543 | 11 | 15 | 11 | 15 | 0.7333 | 1.0000 | 0.7333 | R | -3 |
| oligos_7nt_mkv5_m1 | jim_F1-9_SOLEXA_2.5_FBgn0027339 | oligos_7nt_mkv5_m1 | jim_F1-9_SOLEXA_2.5_FBgn0027339 | 0.730 | 0.536 | 11 | 15 | 11 | 15 | 0.7333 | 1.0000 | 0.7333 | D | 0 |
| oligos_7nt_mkv5_m1 | Sox15_SANGER_5_FBgn0005613 | oligos_7nt_mkv5_m1 | Sox15_SANGER_5_FBgn0005613 | 0.732 | 0.532 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | D | 3 |
| oligos_7nt_mkv5_m1 | Ara_Cell_FBgn0015904 | oligos_7nt_mkv5_m1 | Ara_Cell_FBgn0015904 | 0.712 | 0.518 | 11 | 8 | 8 | 11 | 0.7273 | 0.7273 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m1 | Mirr_SOLEXA_FBgn0014343 | oligos_7nt_mkv5_m1 | Mirr_SOLEXA_FBgn0014343 | 0.914 | 0.498 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m1 | Ara_SOLEXA_FBgn0015904 | oligos_7nt_mkv5_m1 | Ara_SOLEXA_FBgn0015904 | 0.911 | 0.497 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m1 | Caup_SOLEXA_FBgn0015919 | oligos_7nt_mkv5_m1 | Caup_SOLEXA_FBgn0015919 | 0.890 | 0.485 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | D | 0 |
| oligos_7nt_mkv5_m1 | foxo_SANGER_10_FBgn0038197 | oligos_7nt_mkv5_m1 | foxo_SANGER_10_FBgn0038197 | 0.708 | 0.472 | 11 | 9 | 8 | 12 | 0.6667 | 0.7273 | 0.8889 | R | -1 |
| oligos_7nt_mkv5_m1 | lola-PJ_SANGER_5_FBgn0005630 | oligos_7nt_mkv5_m1 | lola-PJ_SANGER_5_FBgn0005630 | 0.741 | 0.472 | 11 | 7 | 7 | 11 | 0.6364 | 0.6364 | 1.0000 | D | 2 |
| oligos_7nt_mkv5_m1 | CG5953_SANGER_5_FBgn0032587 | oligos_7nt_mkv5_m1 | CG5953_SANGER_5_FBgn0032587 | 0.762 | 0.444 | 11 | 8 | 7 | 12 | 0.5833 | 0.6364 | 0.8750 | D | -1 |
| oligos_7nt_mkv5_m1 | Mirr_Cell_FBgn0014343 | oligos_7nt_mkv5_m1 | Mirr_Cell_FBgn0014343 | 0.929 | 0.429 | 11 | 8 | 6 | 13 | 0.4615 | 0.5455 | 0.7500 | D | -2 |
| oligos_7nt_mkv5_m1 | Caup_Cell_FBgn0015919 | oligos_7nt_mkv5_m1 | Caup_Cell_FBgn0015919 | 0.914 | 0.422 | 11 | 8 | 6 | 13 | 0.4615 | 0.5455 | 0.7500 | D | -2 |
| oligos_7nt_mkv5_m1 | slp2_SANGER_5_FBgn0004567 | oligos_7nt_mkv5_m1 | slp2_SANGER_5_FBgn0004567 | 0.712 | 0.415 | 11 | 8 | 7 | 12 | 0.5833 | 0.6364 | 0.8750 | D | -1 |
| oligos_7nt_mkv5_m1 | bin_SANGER_5_FBgn0045759 | oligos_7nt_mkv5_m1 | bin_SANGER_5_FBgn0045759 | 0.800 | 0.400 | 11 | 7 | 6 | 12 | 0.5000 | 0.5455 | 0.8571 | D | -1 |
Host name rsat Job started 2025-11-26.210130 Job done 2025-11-26.210133 Seconds 0.42 user 0.42 system 0.11 cuser 2.15 ; csystem 0.33