One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DrosophilaTFs/DrosophilaTFs_2015-11-06.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_7nt_mkv5_m2/peak-motifs_oligos_7nt_mkv5_m2_vs_db_DrosophilaTFs
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m2_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv5_m2_shift0 (oligos_7nt_mkv5_m2) |
 |
|
|
; oligos_7nt_mkv5_m2; m=0 (reference); ncol1=11; shift=0; ncol=11; hhCCACACCmm
; Alignment reference
a 610 665 56 47 1899 120 1884 31 37 665 597
c 779 651 2175 2075 185 2039 272 2139 2175 670 740
g 352 414 33 72 129 81 56 70 39 560 463
t 597 608 74 144 125 98 126 98 87 443 538
|
| 4936_Dip3_DrosophilaTF_1.1__shift2 (4936_Dip3_DrosophilaTF_1.1_) |
 |
|
|
; oligos_7nt_mkv5_m2 versus 4936_Dip3_DrosophilaTF_1.1_; m=1/1; ncol2=12; w=0; offset=2; strand=D; shift=2; score=0.524266; --cCwsrycwk
; cor=; Ncor=
a 0 0 4 4 46 19 35 7 12 35 19
c 0 0 64 73 11 42 19 58 65 12 8
g 0 0 8 4 12 31 27 4 4 15 27
t 0 0 24 19 31 8 19 31 19 38 46
|