One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_7nt_mkv5_m6/peak-motifs_oligos_7nt_mkv5_m6.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DrosophilaTFs/DrosophilaTFs_2015-11-06.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_7nt_mkv5_m6/peak-motifs_oligos_7nt_mkv5_m6_vs_db_DrosophilaTFs

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m6_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m6_shift0 (oligos_7nt_mkv5_m6)				; oligos_7nt_mkv5_m6; m=0 (reference); ncol1=17; shift=0; ncol=17; tgsTGCTGyTGCTGytg ; Alignment reference a 167 226 113 47 59 58 27 40 40 30 21 38 39 45 109 190 250 c 335 230 1115 82 31 1919 38 44 1312 37 40 1972 68 82 1155 261 291 g 355 1425 770 45 2066 113 50 2073 102 35 2098 89 51 2015 200 279 1342 t 1343 319 202 2026 44 110 2085 43 746 2098 41 101 2042 58 736 1470 317
4933_Adf1_DrosophilaTF_1.1__shift4 (4933_Adf1_DrosophilaTF_1.1_)				; oligos_7nt_mkv5_m6 versus 4933_Adf1_DrosophilaTF_1.1_; m=1/1; ncol2=12; w=0; offset=4; strand=D; shift=4; score=0.568981; ----GCTsCykCyGyh- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 34 0 c 0 0 0 0 0 1 0 50 1 50 0 1 50 0 50 33 0 g 0 0 0 0 1 0 0 50 0 0 50 0 0 1 0 0 0 t 0 0 0 0 0 0 1 0 0 50 50 0 50 0 50 33 0