One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_7nt_mkv5_m8/peak-motifs_oligos_7nt_mkv5_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/oligos_7nt_mkv5_m8/peak-motifs_oligos_7nt_mkv5_m8_vs_db_FlyFactorSurvey
One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m8_shift1 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_7nt_mkv5_m8_shift1 (oligos_7nt_mkv5_m8) |
 |
|
|
; oligos_7nt_mkv5_m8; m=0 (reference); ncol1=16; shift=1; ncol=17; -ACACACACACACACAC
; Alignment reference
a 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079
c 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805
g 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137
t 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224
|
| klu_SANGER_10_FBgn0013469_rc_shift1 (klu_SANGER_10_FBgn0013469_rc) |
 |
|
|
; oligos_7nt_mkv5_m8 versus klu_SANGER_10_FBgn0013469_rc; m=1/2; ncol2=11; w=0; offset=0; strand=R; shift=1; score=0.500964; -mCACCCmCrCa-----
; cor=; Ncor=
a 0 7 0 18 0 0 0 13 0 9 0 12 0 0 0 0 0
c 0 11 20 0 20 20 19 7 20 0 16 2 0 0 0 0 0
g 0 2 0 0 0 0 0 0 0 10 0 2 0 0 0 0 0
t 0 0 0 2 0 0 1 0 0 1 3 2 0 0 0 0 0
|
| CG12029_SANGER_10_FBgn0035454_rc_shift0 (CG12029_SANGER_10_FBgn0035454_rc) |
 |
|
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; oligos_7nt_mkv5_m8 versus CG12029_SANGER_10_FBgn0035454_rc; m=2/2; ncol2=11; w=-1; offset=-1; strand=R; shift=0; score=0.419445; RCCACACCCac------
; cor=; Ncor=
a 5 4 0 16 0 17 0 0 0 13 4 0 0 0 0 0 0
c 0 14 20 2 20 0 20 20 20 3 11 0 0 0 0 0 0
g 15 2 0 2 0 2 0 0 0 0 1 0 0 0 0 0 0
t 0 0 0 0 0 1 0 0 0 4 4 0 0 0 0 0 0
|