One-to-n alignments

Command: compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab

One-to-n matrix alignment; reference matrix: dyads_m10_shift6 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m10_shift6 (dyads_m10)
; dyads_m10; m=0 (reference); ncol1=18; shift=6; ncol=24; ------ACACACACACACACrCAC ; Alignment reference a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123

dyads_m10_shift6 (dyads_m10)
; dyads_m10 versus dyads_m10; m=1/33; ncol2=18; w=0; offset=0; strand=D; shift=6; score= 1; ------ACACACACACACACrCAC ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123

oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)
; dyads_m10 versus oligos_7nt_mkv5_m8; m=2/33; ncol2=16; w=0; offset=2; strand=D; shift=8; score=0.872418; --------ACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224

oligos_6nt_mkv4_m5_rc_shift6 (oligos_6nt_mkv4_m5_rc)
; dyads_m10 versus oligos_6nt_mkv4_m5_rc; m=3/33; ncol2=16; w=0; offset=0; strand=R; shift=6; score=0.802024; ------acAsACACrCACAsac-- ; cor=; Ncor= a 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 c 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 g 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 t 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0

oligos_6nt_mkv4_m2_shift7 (oligos_6nt_mkv4_m2)
; dyads_m10 versus oligos_6nt_mkv4_m2; m=4/33; ncol2=16; w=0; offset=1; strand=D; shift=7; score=0.79183; -------caCwCACAyACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 c 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 g 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 t 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0

dyads_m7_shift9 (dyads_m7)
; dyads_m10 versus dyads_m7; m=5/33; ncol2=15; w=0; offset=3; strand=D; shift=9; score=0.771763; ---------camACACACACrCac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 c 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 g 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 t 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517

positions_6nt_m8_shift1 (positions_6nt_m8)
; dyads_m10 versus positions_6nt_m8; m=6/33; ncol2=23; w=-5; offset=-5; strand=D; shift=1; score=0.770595; -caCACACACACACACACACACac ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027

positions_6nt_m1_shift8 (positions_6nt_m1)
; dyads_m10 versus positions_6nt_m1; m=7/33; ncol2=15; w=0; offset=2; strand=D; shift=8; score=0.769973; --------acACACrCACACrca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 c 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 g 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 t 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0

positions_7nt_m10_shift2 (positions_7nt_m10)
; dyads_m10 versus positions_7nt_m10; m=8/33; ncol2=24; w=-4; offset=-4; strand=D; shift=2; score=0.741032; --acACACACACACACACACACAC ; cor=; Ncor= a 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 c 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 g 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 t 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527

positions_7nt_m6_shift2 (positions_7nt_m6)
; dyads_m10 versus positions_7nt_m6; m=9/33; ncol2=24; w=-4; offset=-4; strand=D; shift=2; score=0.740579; --acaCACACACACACACACACAC ; cor=; Ncor= a 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 c 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 g 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 t 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658

positions_6nt_m5_rc_shift4 (positions_6nt_m5_rc)
; dyads_m10 versus positions_6nt_m5_rc; m=10/33; ncol2=24; w=-2; offset=-2; strand=R; shift=4; score=0.739993; ----acaCACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 c 0 0 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 g 0 0 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 t 0 0 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483

positions_7nt_m7_shift1 (positions_7nt_m7)
; dyads_m10 versus positions_7nt_m7; m=11/33; ncol2=24; w=-5; offset=-5; strand=D; shift=1; score=0.739082; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313

positions_7nt_m4_shift1 (positions_7nt_m4)
; dyads_m10 versus positions_7nt_m4; m=12/33; ncol2=24; w=-5; offset=-5; strand=D; shift=1; score=0.739009; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297

positions_6nt_m9_shift0 (positions_6nt_m9)
; dyads_m10 versus positions_6nt_m9; m=13/33; ncol2=24; w=-6; offset=-6; strand=D; shift=0; score=0.738978; acaCacACACACACACACACACac ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244

positions_7nt_m8_shift2 (positions_7nt_m8)
; dyads_m10 versus positions_7nt_m8; m=14/33; ncol2=24; w=-4; offset=-4; strand=D; shift=2; score=0.737862; --acACACACACACACACACACAC ; cor=; Ncor= a 0 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 c 0 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 g 0 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 t 0 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288

dyads_m8_shift1 (dyads_m8)
; dyads_m10 versus dyads_m8; m=15/33; ncol2=24; w=-5; offset=-5; strand=D; shift=1; score=0.737754; -CaCACACACACACACACACACrC ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049

positions_6nt_m2_shift3 (positions_6nt_m2)
; dyads_m10 versus positions_6nt_m2; m=16/33; ncol2=24; w=-3; offset=-3; strand=D; shift=3; score=0.737685; ---caCACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 c 0 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 g 0 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 t 0 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006

dyads_m1_shift1 (dyads_m1)
; dyads_m10 versus dyads_m1; m=17/33; ncol2=24; w=-5; offset=-5; strand=D; shift=1; score=0.737525; -cacACACACACACACACACACaC ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034

positions_6nt_m6_shift2 (positions_6nt_m6)
; dyads_m10 versus positions_6nt_m6; m=18/33; ncol2=24; w=-4; offset=-4; strand=D; shift=2; score=0.737063; --acamACACACACACACACACAC ; cor=; Ncor= a 0 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 c 0 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 g 0 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 t 0 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717

positions_6nt_m4_shift0 (positions_6nt_m4)
; dyads_m10 versus positions_6nt_m4; m=19/33; ncol2=24; w=-6; offset=-6; strand=D; shift=0; score=0.736967; acrCACACACACACACACACACac ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762

positions_6nt_m10_shift1 (positions_6nt_m10)
; dyads_m10 versus positions_6nt_m10; m=20/33; ncol2=24; w=-5; offset=-5; strand=D; shift=1; score=0.736308; -cacamACACACACACACACACAC ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908

positions_7nt_m2_shift5 (positions_7nt_m2)
; dyads_m10 versus positions_7nt_m2; m=21/33; ncol2=24; w=-1; offset=-1; strand=D; shift=5; score=0.736123; -----cacACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 c 0 0 0 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 g 0 0 0 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 t 0 0 0 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509

positions_7nt_m3_rc_shift5 (positions_7nt_m3_rc)
; dyads_m10 versus positions_7nt_m3_rc; m=22/33; ncol2=24; w=-1; offset=-1; strand=R; shift=5; score=0.735559; -----cacACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 c 0 0 0 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 g 0 0 0 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 t 0 0 0 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564

positions_7nt_m5_shift0 (positions_7nt_m5)
; dyads_m10 versus positions_7nt_m5; m=23/33; ncol2=24; w=-6; offset=-6; strand=D; shift=0; score=0.73514; acaCACACACACACACACACACac ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250

positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)
; dyads_m10 versus positions_6nt_m3_rc; m=24/33; ncol2=24; w=-6; offset=-6; strand=R; shift=0; score=0.734954; mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706

positions_7nt_m9_shift3 (positions_7nt_m9)
; dyads_m10 versus positions_7nt_m9; m=25/33; ncol2=24; w=-3; offset=-3; strand=D; shift=3; score=0.734879; ---caCACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 c 0 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 g 0 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 t 0 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783

positions_7nt_m1_shift1 (positions_7nt_m1)
; dyads_m10 versus positions_7nt_m1; m=26/33; ncol2=24; w=-5; offset=-5; strand=D; shift=1; score=0.734497; -cacACACACACACACACACACAC ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882

positions_6nt_m7_shift1 (positions_6nt_m7)
; dyads_m10 versus positions_6nt_m7; m=27/33; ncol2=24; w=-5; offset=-5; strand=D; shift=1; score=0.734244; -caCaCACACACACACACACACAC ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139

oligos_7nt_mkv5_m4_shift9 (oligos_7nt_mkv5_m4)
; dyads_m10 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=3; strand=D; shift=9; score=0.701278; ---------caCACAcACACac-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 c 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 g 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 t 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0

dyads_m9_shift7 (dyads_m9)
; dyads_m10 versus dyads_m9; m=29/33; ncol2=14; w=0; offset=1; strand=D; shift=7; score=0.666679; -------caAACACACACmca--- ; cor=; Ncor= a 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 c 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 g 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 t 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0

oligos_7nt_mkv5_m5_shift9 (oligos_7nt_mkv5_m5)
; dyads_m10 versus oligos_7nt_mkv5_m5; m=30/33; ncol2=14; w=0; offset=3; strand=D; shift=9; score=0.658409; ---------caCACGCACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 c 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 g 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 t 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0

dyads_m4_shift11 (dyads_m4)
; dyads_m10 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=5; strand=D; shift=11; score=0.648784; -----------camACACACrCaC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 c 0 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 g 0 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 t 0 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355

dyads_m6_shift7 (dyads_m6)
; dyads_m10 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=1; strand=D; shift=7; score=0.638382; -------camACACACAyac---- ; cor=; Ncor= a 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 c 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 g 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 t 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0

oligos_7nt_mkv5_m9_shift9 (oligos_7nt_mkv5_m9)
; dyads_m10 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=3; strand=D; shift=9; score=0.563617; ---------caCAsACACAAam-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 c 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 g 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 t 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0

One-to-n matrix alignment; reference matrix: positions_6nt_m6_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m6_shift1 (positions_6nt_m6)
; positions_6nt_m6; m=0 (reference); ncol1=24; shift=1; ncol=25; -acamACACACACACACACACACac ; Alignment reference a 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141

positions_6nt_m6_shift1 (positions_6nt_m6)
; positions_6nt_m6 versus positions_6nt_m6; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -acamACACACACACACACACACac ; cor=; Ncor= a 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141

positions_7nt_m10_shift1 (positions_7nt_m10)
; positions_6nt_m6 versus positions_7nt_m10; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991812; -acACACACACACACACACACACaC ; cor=; Ncor= a 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 c 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 g 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 t 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221

positions_7nt_m6_shift1 (positions_7nt_m6)
; positions_6nt_m6 versus positions_7nt_m6; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991185; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 c 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 g 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 t 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314

positions_7nt_m5_shift1 (positions_7nt_m5)
; positions_6nt_m6 versus positions_7nt_m5; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990352; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250

positions_7nt_m8_shift1 (positions_7nt_m8)
; positions_6nt_m6 versus positions_7nt_m8; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.986924; -acACACACACACACACACACACac ; cor=; Ncor= a 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444

positions_6nt_m5_rc_shift1 (positions_6nt_m5_rc)
; positions_6nt_m6 versus positions_6nt_m5_rc; m=6/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.986849; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 c 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 g 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 t 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346

positions_6nt_m4_shift1 (positions_6nt_m4)
; positions_6nt_m6 versus positions_6nt_m4; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984737; -acrCACACACACACACACACACac ; cor=; Ncor= a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762

positions_6nt_m9_shift1 (positions_6nt_m9)
; positions_6nt_m6 versus positions_6nt_m9; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.977112; -acaCacACACACACACACACACac ; cor=; Ncor= a 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244

positions_6nt_m8_shift2 (positions_6nt_m8)
; positions_6nt_m6 versus positions_6nt_m8; m=9/33; ncol2=23; w=0; offset=1; strand=D; shift=2; score=0.944443; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027

positions_6nt_m3_rc_shift1 (positions_6nt_m3_rc)
; positions_6nt_m6 versus positions_6nt_m3_rc; m=10/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.932795; -mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706

positions_6nt_m10_shift0 (positions_6nt_m10)
; positions_6nt_m6 versus positions_6nt_m10; m=11/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.918987; cacamACACACACACACACACACa- ; cor=; Ncor= a 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 0 c 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 0 g 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 0 t 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785 0

positions_7nt_m1_shift2 (positions_7nt_m1)
; positions_6nt_m6 versus positions_7nt_m1; m=12/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.912482; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 c 0 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 g 0 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 t 0 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882

positions_7nt_m2_shift2 (positions_7nt_m2)
; positions_6nt_m6 versus positions_7nt_m2; m=13/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.912357; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 c 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 g 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 t 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970

dyads_m1_shift2 (dyads_m1)
; positions_6nt_m6 versus dyads_m1; m=14/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.912035; --cacACACACACACACACACACaC ; cor=; Ncor= a 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034

positions_7nt_m3_rc_shift2 (positions_7nt_m3_rc)
; positions_6nt_m6 versus positions_7nt_m3_rc; m=15/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.910612; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 c 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 g 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 t 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963

positions_7nt_m7_shift2 (positions_7nt_m7)
; positions_6nt_m6 versus positions_7nt_m7; m=16/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910028; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313

positions_7nt_m9_shift2 (positions_7nt_m9)
; positions_6nt_m6 versus positions_7nt_m9; m=17/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.908884; --caCACACACACACACACACACAC ; cor=; Ncor= a 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 c 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 g 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 t 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316

positions_6nt_m2_shift2 (positions_6nt_m2)
; positions_6nt_m6 versus positions_6nt_m2; m=18/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.907272; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256

positions_7nt_m4_shift2 (positions_7nt_m4)
; positions_6nt_m6 versus positions_7nt_m4; m=19/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.906854; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297

positions_6nt_m7_shift2 (positions_6nt_m7)
; positions_6nt_m6 versus positions_6nt_m7; m=20/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.906723; --caCaCACACACACACACACACAC ; cor=; Ncor= a 0 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 c 0 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 g 0 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 t 0 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139

dyads_m8_shift2 (dyads_m8)
; positions_6nt_m6 versus dyads_m8; m=21/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.906305; --CaCACACACACACACACACACrC ; cor=; Ncor= a 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049

dyads_m10_shift5 (dyads_m10)
; positions_6nt_m6 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=4; strand=D; shift=5; score=0.737063; -----ACACACACACACACrCAC-- ; cor=; Ncor= a 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 0 c 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 0 g 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 0 t 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0 0

oligos_7nt_mkv5_m8_shift5 (oligos_7nt_mkv5_m8)
; positions_6nt_m6 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=4; strand=D; shift=5; score=0.662311; -----ACACACACACACACAC---- ; cor=; Ncor= a 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 0 0 c 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 0 0 g 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 0 0 t 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0 0 0

oligos_6nt_mkv4_m2_shift4 (oligos_6nt_mkv4_m2)
; positions_6nt_m6 versus oligos_6nt_mkv4_m2; m=24/33; ncol2=16; w=0; offset=3; strand=D; shift=4; score=0.602774; ----caCwCACAyACACmca----- ; cor=; Ncor= a 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 0 0 0 0 c 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 0 0 0 0 g 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 0 0 0 0 t 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0 0 0 0 0

oligos_6nt_mkv4_m5_rc_shift5 (oligos_6nt_mkv4_m5_rc)
; positions_6nt_m6 versus oligos_6nt_mkv4_m5_rc; m=25/33; ncol2=16; w=0; offset=4; strand=R; shift=5; score=0.597911; -----acAsACACrCACAsac---- ; cor=; Ncor= a 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 0 0 c 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 0 0 g 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 0 0 t 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0 0 0

dyads_m7_shift2 (dyads_m7)
; positions_6nt_m6 versus dyads_m7; m=26/33; ncol2=15; w=0; offset=1; strand=D; shift=2; score=0.569307; --camACACACACrCac-------- ; cor=; Ncor= a 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 0 c 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 0 g 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 0 t 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0 0

positions_6nt_m1_shift9 (positions_6nt_m1)
; positions_6nt_m6 versus positions_6nt_m1; m=27/33; ncol2=15; w=0; offset=8; strand=D; shift=9; score=0.556616; ---------acACACrCACACrca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 c 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 g 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 t 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0

oligos_7nt_mkv5_m4_shift12 (oligos_7nt_mkv5_m4)
; positions_6nt_m6 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=11; strand=D; shift=12; score=0.526805; ------------caCACAcACACac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 c 0 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 g 0 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 t 0 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279

dyads_m9_shift2 (dyads_m9)
; positions_6nt_m6 versus dyads_m9; m=29/33; ncol2=14; w=0; offset=1; strand=D; shift=2; score=0.50548; --caAACACACACmca--------- ; cor=; Ncor= a 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 0 0 c 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 0 0 g 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 0 0 t 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0 0 0

dyads_m6_shift2 (dyads_m6)
; positions_6nt_m6 versus dyads_m6; m=30/33; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.500773; --camACACACAyac---------- ; cor=; Ncor= a 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 0 0 c 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 0 0 g 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 0 0 t 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0 0 0

dyads_m4_shift2 (dyads_m4)
; positions_6nt_m6 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.484611; --camACACACrCaC---------- ; cor=; Ncor= a 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 0 0 c 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 0 0 g 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 0 0 t 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m5_shift10 (oligos_7nt_mkv5_m5)
; positions_6nt_m6 versus oligos_7nt_mkv5_m5; m=32/33; ncol2=14; w=0; offset=9; strand=D; shift=10; score=0.482922; ----------caCACGCACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 c 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 g 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 t 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0

oligos_7nt_mkv5_m9_shift8 (oligos_7nt_mkv5_m9)
; positions_6nt_m6 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=7; strand=D; shift=8; score=0.434035; --------caCAsACACAAam---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 0 0 c 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 0 0 g 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 0 0 t 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_6nt_m4_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m4_shift1 (positions_6nt_m4)
; positions_6nt_m4; m=0 (reference); ncol1=24; shift=1; ncol=25; -acrCACACACACACACACACACac ; Alignment reference a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762

positions_6nt_m4_shift1 (positions_6nt_m4)
; positions_6nt_m4 versus positions_6nt_m4; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -acrCACACACACACACACACACac ; cor=; Ncor= a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762

positions_6nt_m5_rc_shift1 (positions_6nt_m5_rc)
; positions_6nt_m4 versus positions_6nt_m5_rc; m=2/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.993427; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 c 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 g 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 t 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346

positions_7nt_m5_shift1 (positions_7nt_m5)
; positions_6nt_m4 versus positions_7nt_m5; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990877; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250

positions_7nt_m6_shift1 (positions_7nt_m6)
; positions_6nt_m4 versus positions_7nt_m6; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989443; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 c 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 g 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 t 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314

positions_7nt_m8_shift1 (positions_7nt_m8)
; positions_6nt_m4 versus positions_7nt_m8; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987465; -acACACACACACACACACACACac ; cor=; Ncor= a 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444

positions_7nt_m10_shift1 (positions_7nt_m10)
; positions_6nt_m4 versus positions_7nt_m10; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.985863; -acACACACACACACACACACACaC ; cor=; Ncor= a 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 c 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 g 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 t 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221

positions_6nt_m6_shift1 (positions_6nt_m6)
; positions_6nt_m4 versus positions_6nt_m6; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984737; -acamACACACACACACACACACac ; cor=; Ncor= a 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141

positions_6nt_m9_shift1 (positions_6nt_m9)
; positions_6nt_m4 versus positions_6nt_m9; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.974739; -acaCacACACACACACACACACac ; cor=; Ncor= a 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244

positions_6nt_m8_shift2 (positions_6nt_m8)
; positions_6nt_m4 versus positions_6nt_m8; m=9/33; ncol2=23; w=0; offset=1; strand=D; shift=2; score=0.943956; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027

positions_6nt_m7_shift0 (positions_6nt_m7)
; positions_6nt_m4 versus positions_6nt_m7; m=10/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.914283; caCaCACACACACACACACACACa- ; cor=; Ncor= a 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 0 c 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 0 g 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 0 t 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062 0

positions_7nt_m7_shift2 (positions_7nt_m7)
; positions_6nt_m4 versus positions_7nt_m7; m=11/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.913766; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313

dyads_m8_shift2 (dyads_m8)
; positions_6nt_m4 versus dyads_m8; m=12/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.912271; --CaCACACACACACACACACACrC ; cor=; Ncor= a 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049

positions_6nt_m3_rc_shift1 (positions_6nt_m3_rc)
; positions_6nt_m4 versus positions_6nt_m3_rc; m=13/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.911422; -mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706

positions_6nt_m2_shift2 (positions_6nt_m2)
; positions_6nt_m4 versus positions_6nt_m2; m=14/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.911324; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256

positions_7nt_m1_shift0 (positions_7nt_m1)
; positions_6nt_m4 versus positions_7nt_m1; m=15/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910878; cacACACACACACACACACACACa- ; cor=; Ncor= a 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 0 c 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 0 g 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 0 t 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835 0

positions_7nt_m4_shift2 (positions_7nt_m4)
; positions_6nt_m4 versus positions_7nt_m4; m=16/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910866; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297

positions_7nt_m9_shift0 (positions_7nt_m9)
; positions_6nt_m4 versus positions_7nt_m9; m=17/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910422; caCACACACACACACACACACACa- ; cor=; Ncor= a 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 0 c 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 0 g 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 0 t 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216 0

dyads_m1_shift2 (dyads_m1)
; positions_6nt_m4 versus dyads_m1; m=18/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.909086; --cacACACACACACACACACACaC ; cor=; Ncor= a 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034

positions_7nt_m3_rc_shift0 (positions_7nt_m3_rc)
; positions_6nt_m4 versus positions_7nt_m3_rc; m=19/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.90771; cacACACACACACACACACACACa- ; cor=; Ncor= a 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 0 c 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 0 g 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 0 t 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888 0

positions_7nt_m2_shift0 (positions_7nt_m2)
; positions_6nt_m4 versus positions_7nt_m2; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.907128; cacACACACACACACACACACACa- ; cor=; Ncor= a 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 0 c 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 0 g 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 0 t 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894 0

positions_6nt_m10_shift0 (positions_6nt_m10)
; positions_6nt_m4 versus positions_6nt_m10; m=21/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.903193; cacamACACACACACACACACACa- ; cor=; Ncor= a 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 0 c 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 0 g 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 0 t 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785 0

dyads_m10_shift7 (dyads_m10)
; positions_6nt_m4 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=6; strand=D; shift=7; score=0.736967; -------ACACACACACACACrCAC ; cor=; Ncor= a 0 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 c 0 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 g 0 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 t 0 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123

oligos_7nt_mkv5_m8_shift9 (oligos_7nt_mkv5_m8)
; positions_6nt_m4 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=8; strand=D; shift=9; score=0.663169; ---------ACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 c 0 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 g 0 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 t 0 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224

oligos_6nt_mkv4_m5_rc_shift9 (oligos_6nt_mkv4_m5_rc)
; positions_6nt_m4 versus oligos_6nt_mkv4_m5_rc; m=24/33; ncol2=16; w=0; offset=8; strand=R; shift=9; score=0.60506; ---------acAsACACrCACAsac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 c 0 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 g 0 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 t 0 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214

oligos_6nt_mkv4_m2_shift2 (oligos_6nt_mkv4_m2)
; positions_6nt_m4 versus oligos_6nt_mkv4_m2; m=25/33; ncol2=16; w=0; offset=1; strand=D; shift=2; score=0.601451; --caCwCACAyACACmca------- ; cor=; Ncor= a 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 0 0 0 0 0 0 c 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 0 0 0 0 0 0 g 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 0 0 0 0 0 0 t 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0 0 0 0 0 0 0

positions_6nt_m1_shift9 (positions_6nt_m1)
; positions_6nt_m4 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=8; strand=D; shift=9; score=0.560786; ---------acACACrCACACrca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 c 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 g 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 t 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0

dyads_m7_shift8 (dyads_m7)
; positions_6nt_m4 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=7; strand=D; shift=8; score=0.557893; --------camACACACACrCac-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 c 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 g 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 t 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0

oligos_7nt_mkv5_m4_shift10 (oligos_7nt_mkv5_m4)
; positions_6nt_m4 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=9; strand=D; shift=10; score=0.52993; ----------caCACAcACACac-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 c 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 g 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 t 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0

oligos_7nt_mkv5_m5_shift10 (oligos_7nt_mkv5_m5)
; positions_6nt_m4 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=9; strand=D; shift=10; score=0.490035; ----------caCACGCACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 c 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 g 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 t 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0

dyads_m9_shift10 (dyads_m9)
; positions_6nt_m4 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=9; strand=D; shift=10; score=0.487561; ----------caAACACACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 c 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 g 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 t 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0

dyads_m6_shift12 (dyads_m6)
; positions_6nt_m4 versus dyads_m6; m=31/33; ncol2=13; w=0; offset=11; strand=D; shift=12; score=0.472149; ------------camACACACAyac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 c 0 0 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 g 0 0 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 t 0 0 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355

dyads_m4_shift8 (dyads_m4)
; positions_6nt_m4 versus dyads_m4; m=32/33; ncol2=13; w=0; offset=7; strand=D; shift=8; score=0.470146; --------camACACACrCaC---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 c 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 g 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 t 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0

oligos_7nt_mkv5_m9_shift12 (oligos_7nt_mkv5_m9)
; positions_6nt_m4 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=11; strand=D; shift=12; score=0.437756; ------------caCAsACACAAam ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 c 0 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 g 0 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 t 0 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270

One-to-n matrix alignment; reference matrix: positions_7nt_m9_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m9_shift1 (positions_7nt_m9)
; positions_7nt_m9; m=0 (reference); ncol1=24; shift=1; ncol=25; -caCACACACACACACACACACACa ; Alignment reference a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216

positions_7nt_m9_shift1 (positions_7nt_m9)
; positions_7nt_m9 versus positions_7nt_m9; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216

positions_7nt_m2_shift1 (positions_7nt_m2)
; positions_7nt_m9 versus positions_7nt_m2; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.996994; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894

positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)
; positions_7nt_m9 versus positions_7nt_m3_rc; m=3/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.993812; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888

positions_7nt_m7_shift1 (positions_7nt_m7)
; positions_7nt_m9 versus positions_7nt_m7; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 0.9912; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231

positions_6nt_m7_shift1 (positions_6nt_m7)
; positions_7nt_m9 versus positions_6nt_m7; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991115; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062

dyads_m1_shift1 (dyads_m1)
; positions_7nt_m9 versus dyads_m1; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990714; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002

positions_7nt_m4_shift1 (positions_7nt_m4)
; positions_7nt_m9 versus positions_7nt_m4; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989389; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233

positions_7nt_m1_shift1 (positions_7nt_m1)
; positions_7nt_m9 versus positions_7nt_m1; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989155; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835

dyads_m8_shift1 (dyads_m8)
; positions_7nt_m9 versus dyads_m8; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987385; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988

positions_6nt_m2_shift1 (positions_6nt_m2)
; positions_7nt_m9 versus positions_6nt_m2; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987055; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111

positions_6nt_m10_shift1 (positions_6nt_m10)
; positions_7nt_m9 versus positions_6nt_m10; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984224; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785

positions_6nt_m8_shift1 (positions_6nt_m8)
; positions_7nt_m9 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.946372; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0

positions_7nt_m5_shift2 (positions_7nt_m5)
; positions_7nt_m9 versus positions_7nt_m5; m=13/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score= 0.9162; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 c 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 g 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 t 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994

positions_7nt_m8_shift0 (positions_7nt_m8)
; positions_7nt_m9 versus positions_7nt_m8; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.912694; acACACACACACACACACACACac- ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 0 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 0 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 0 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444 0

positions_7nt_m10_shift0 (positions_7nt_m10)
; positions_7nt_m9 versus positions_7nt_m10; m=15/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.91106; acACACACACACACACACACACaC- ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 0 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 0 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 0 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221 0

positions_7nt_m6_shift2 (positions_7nt_m6)
; positions_7nt_m9 versus positions_7nt_m6; m=16/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910989; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 c 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 g 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 t 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108

positions_6nt_m4_shift2 (positions_6nt_m4)
; positions_7nt_m9 versus positions_6nt_m4; m=17/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910422; --acrCACACACACACACACACACa ; cor=; Ncor= a 0 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 c 0 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 g 0 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 t 0 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646

positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)
; positions_7nt_m9 versus positions_6nt_m5_rc; m=18/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.910175; acaCACACACACACACACACACac- ; cor=; Ncor= a 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 0 c 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 0 g 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 0 t 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346 0

positions_6nt_m6_shift0 (positions_6nt_m6)
; positions_7nt_m9 versus positions_6nt_m6; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908884; acamACACACACACACACACACac- ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 0 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 0 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 0 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141 0

positions_6nt_m9_shift0 (positions_6nt_m9)
; positions_7nt_m9 versus positions_6nt_m9; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.903082; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0

positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)
; positions_7nt_m9 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.867086; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0

dyads_m10_shift4 (dyads_m10)
; positions_7nt_m9 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=3; strand=D; shift=4; score=0.734879; ----ACACACACACACACrCAC--- ; cor=; Ncor= a 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 0 0 c 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 0 0 g 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 0 0 t 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0 0 0

oligos_7nt_mkv5_m8_shift6 (oligos_7nt_mkv5_m8)
; positions_7nt_m9 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=5; strand=D; shift=6; score=0.656961; ------ACACACACACACACAC--- ; cor=; Ncor= a 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 0 c 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 0 g 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 0 t 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0 0

oligos_6nt_mkv4_m5_rc_shift4 (oligos_6nt_mkv4_m5_rc)
; positions_7nt_m9 versus oligos_6nt_mkv4_m5_rc; m=24/33; ncol2=16; w=0; offset=3; strand=R; shift=4; score=0.608195; ----acAsACACrCACAsac----- ; cor=; Ncor= a 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 0 0 0 c 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 0 0 0 g 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 0 0 0 t 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0 0 0 0

oligos_6nt_mkv4_m2_shift9 (oligos_6nt_mkv4_m2)
; positions_7nt_m9 versus oligos_6nt_mkv4_m2; m=25/33; ncol2=16; w=0; offset=8; strand=D; shift=9; score=0.592441; ---------caCwCACAyACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 c 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 g 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 t 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421

dyads_m7_shift1 (dyads_m7)
; positions_7nt_m9 versus dyads_m7; m=26/33; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.570422; -camACACACACrCac--------- ; cor=; Ncor= a 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 0 0 c 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 0 0 g 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 0 0 t 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0 0 0

positions_6nt_m1_shift6 (positions_6nt_m1)
; positions_7nt_m9 versus positions_6nt_m1; m=27/33; ncol2=15; w=0; offset=5; strand=D; shift=6; score=0.566387; ------acACACrCACACrca---- ; cor=; Ncor= a 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 0 0 0 c 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 0 0 0 g 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 0 0 0 t 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0 0 0 0

oligos_7nt_mkv5_m4_shift11 (oligos_7nt_mkv5_m4)
; positions_7nt_m9 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.522281; -----------caCACAcACACac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 c 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 g 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 t 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0

oligos_7nt_mkv5_m5_shift7 (oligos_7nt_mkv5_m5)
; positions_7nt_m9 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=6; strand=D; shift=7; score=0.501169; -------caCACGCACACmca---- ; cor=; Ncor= a 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 0 c 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 0 g 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 0 t 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0 0

dyads_m9_shift1 (dyads_m9)
; positions_7nt_m9 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.493646; -caAACACACACmca---------- ; cor=; Ncor= a 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 0 0 0 c 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 0 0 0 g 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 0 0 0 t 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0 0 0 0

dyads_m4_shift3 (dyads_m4)
; positions_7nt_m9 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=2; strand=D; shift=3; score=0.484641; ---camACACACrCaC--------- ; cor=; Ncor= a 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 0 c 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 0 g 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 0 t 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0 0

dyads_m6_shift9 (dyads_m6)
; positions_7nt_m9 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=8; strand=D; shift=9; score=0.47542; ---------camACACACAyac--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 c 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 g 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 t 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0

oligos_7nt_mkv5_m9_shift9 (oligos_7nt_mkv5_m9)
; positions_7nt_m9 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=8; strand=D; shift=9; score=0.420789; ---------caCAsACACAAam--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 0 c 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 0 g 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 0 t 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m7_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m7_shift0 (oligos_7nt_mkv5_m7)
; oligos_7nt_mkv5_m7; m=0 (reference); ncol1=14; shift=0; ncol=14; ctCTCTyTCTCTCt ; Alignment reference a 503 585 161 215 120 150 166 109 121 141 154 241 435 595 c 4268 736 5741 282 5809 301 4049 266 5870 243 5779 444 4387 960 g 471 820 143 252 136 244 156 293 76 286 147 332 524 719 t 1206 4307 403 5699 383 5753 2077 5780 381 5778 368 5431 1102 4174

oligos_7nt_mkv5_m7_shift0 (oligos_7nt_mkv5_m7)
; oligos_7nt_mkv5_m7 versus oligos_7nt_mkv5_m7; m=1/3; ncol2=14; w=0; offset=0; strand=D; shift=0; score= 1; ctCTCTyTCTCTCt ; cor=; Ncor= a 503 585 161 215 120 150 166 109 121 141 154 241 435 595 c 4268 736 5741 282 5809 301 4049 266 5870 243 5779 444 4387 960 g 471 820 143 252 136 244 156 293 76 286 147 332 524 719 t 1206 4307 403 5699 383 5753 2077 5780 381 5778 368 5431 1102 4174

dyads_m2_rc_shift0 (dyads_m2_rc)
; oligos_7nt_mkv5_m7 versus dyads_m2_rc; m=2/3; ncol2=17; w=0; offset=0; strand=R; shift=0; score=0.80743; CtCTCTCTCTCTCT ; cor=; Ncor= a 534 757 286 458 210 341 149 281 153 314 167 396 205 545 c 5329 751 6323 380 6662 311 6823 285 6812 285 6791 275 6628 387 g 526 1020 274 633 200 571 134 520 148 521 166 569 226 610 t 1251 5112 757 6169 568 6417 534 6554 527 6520 516 6400 581 6098

oligos_7nt_mkv5_m10_rc_shift4 (oligos_7nt_mkv5_m10_rc)
; oligos_7nt_mkv5_m7 versus oligos_7nt_mkv5_m10_rc; m=3/3; ncol2=11; w=0; offset=4; strand=R; shift=4; score=0.470951; ----cyGTCTCTGy ; cor=; Ncor= a 0 0 0 0 272 236 65 39 79 25 69 20 55 227 c 0 0 0 0 665 487 267 85 1613 59 1666 55 207 496 g 0 0 0 0 434 348 1348 80 37 93 33 60 1422 367 t 0 0 0 0 432 732 123 1599 74 1626 35 1668 119 713

One-to-n matrix alignment; reference matrix: positions_7nt_m8_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m8_shift1 (positions_7nt_m8)
; positions_7nt_m8; m=0 (reference); ncol1=24; shift=1; ncol=25; -acACACACACACACACACACACac ; Alignment reference a 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444

positions_7nt_m8_shift1 (positions_7nt_m8)
; positions_7nt_m8 versus positions_7nt_m8; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -acACACACACACACACACACACac ; cor=; Ncor= a 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444

positions_7nt_m5_shift1 (positions_7nt_m5)
; positions_7nt_m8 versus positions_7nt_m5; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.988633; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250

positions_6nt_m5_rc_shift1 (positions_6nt_m5_rc)
; positions_7nt_m8 versus positions_6nt_m5_rc; m=3/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.988383; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 c 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 g 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 t 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346

positions_6nt_m9_shift1 (positions_6nt_m9)
; positions_7nt_m8 versus positions_6nt_m9; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987893; -acaCacACACACACACACACACac ; cor=; Ncor= a 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244

positions_7nt_m10_shift1 (positions_7nt_m10)
; positions_7nt_m8 versus positions_7nt_m10; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987749; -acACACACACACACACACACACaC ; cor=; Ncor= a 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 c 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 g 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 t 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221

positions_6nt_m4_shift1 (positions_6nt_m4)
; positions_7nt_m8 versus positions_6nt_m4; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987465; -acrCACACACACACACACACACac ; cor=; Ncor= a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762

positions_7nt_m6_shift1 (positions_7nt_m6)
; positions_7nt_m8 versus positions_7nt_m6; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987064; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 c 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 g 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 t 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314

positions_6nt_m6_shift1 (positions_6nt_m6)
; positions_7nt_m8 versus positions_6nt_m6; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.986924; -acamACACACACACACACACACac ; cor=; Ncor= a 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141

positions_6nt_m8_shift2 (positions_6nt_m8)
; positions_7nt_m8 versus positions_6nt_m8; m=9/33; ncol2=23; w=0; offset=1; strand=D; shift=2; score=0.948782; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027

positions_6nt_m3_rc_shift1 (positions_6nt_m3_rc)
; positions_7nt_m8 versus positions_6nt_m3_rc; m=10/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.945829; -mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706

positions_7nt_m9_shift2 (positions_7nt_m9)
; positions_7nt_m8 versus positions_7nt_m9; m=11/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.912694; --caCACACACACACACACACACAC ; cor=; Ncor= a 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 c 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 g 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 t 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316

positions_7nt_m2_shift2 (positions_7nt_m2)
; positions_7nt_m8 versus positions_7nt_m2; m=12/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.911648; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 c 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 g 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 t 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970

positions_6nt_m2_shift2 (positions_6nt_m2)
; positions_7nt_m8 versus positions_6nt_m2; m=13/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.911396; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256

positions_7nt_m7_shift2 (positions_7nt_m7)
; positions_7nt_m8 versus positions_7nt_m7; m=14/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.911123; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313

dyads_m1_shift2 (dyads_m1)
; positions_7nt_m8 versus dyads_m1; m=15/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910501; --cacACACACACACACACACACaC ; cor=; Ncor= a 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034

positions_6nt_m7_shift0 (positions_6nt_m7)
; positions_7nt_m8 versus positions_6nt_m7; m=16/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910129; caCaCACACACACACACACACACa- ; cor=; Ncor= a 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 0 c 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 0 g 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 0 t 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062 0

positions_7nt_m4_shift2 (positions_7nt_m4)
; positions_7nt_m8 versus positions_7nt_m4; m=17/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.909686; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297

positions_7nt_m1_shift0 (positions_7nt_m1)
; positions_7nt_m8 versus positions_7nt_m1; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.909199; cacACACACACACACACACACACa- ; cor=; Ncor= a 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 0 c 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 0 g 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 0 t 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835 0

dyads_m8_shift2 (dyads_m8)
; positions_7nt_m8 versus dyads_m8; m=19/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.908447; --CaCACACACACACACACACACrC ; cor=; Ncor= a 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049

positions_7nt_m3_rc_shift2 (positions_7nt_m3_rc)
; positions_7nt_m8 versus positions_7nt_m3_rc; m=20/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.90777; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 c 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 g 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 t 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963

positions_6nt_m10_shift2 (positions_6nt_m10)
; positions_7nt_m8 versus positions_6nt_m10; m=21/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.905922; --cacamACACACACACACACACAC ; cor=; Ncor= a 0 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 c 0 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 g 0 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 t 0 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908

dyads_m10_shift5 (dyads_m10)
; positions_7nt_m8 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=4; strand=D; shift=5; score=0.737862; -----ACACACACACACACrCAC-- ; cor=; Ncor= a 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 0 c 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 0 g 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 0 t 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0 0

oligos_7nt_mkv5_m8_shift9 (oligos_7nt_mkv5_m8)
; positions_7nt_m8 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=8; strand=D; shift=9; score=0.658481; ---------ACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 c 0 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 g 0 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 t 0 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224

oligos_6nt_mkv4_m5_rc_shift5 (oligos_6nt_mkv4_m5_rc)
; positions_7nt_m8 versus oligos_6nt_mkv4_m5_rc; m=24/33; ncol2=16; w=0; offset=4; strand=R; shift=5; score=0.607303; -----acAsACACrCACAsac---- ; cor=; Ncor= a 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 0 0 c 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 0 0 g 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 0 0 t 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0 0 0

oligos_6nt_mkv4_m2_shift8 (oligos_6nt_mkv4_m2)
; positions_7nt_m8 versus oligos_6nt_mkv4_m2; m=25/33; ncol2=16; w=0; offset=7; strand=D; shift=8; score=0.591419; --------caCwCACAyACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 c 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 g 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 t 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0

dyads_m7_shift2 (dyads_m7)
; positions_7nt_m8 versus dyads_m7; m=26/33; ncol2=15; w=0; offset=1; strand=D; shift=2; score=0.568594; --camACACACACrCac-------- ; cor=; Ncor= a 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 0 c 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 0 g 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 0 t 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0 0

positions_6nt_m1_shift7 (positions_6nt_m1)
; positions_7nt_m8 versus positions_6nt_m1; m=27/33; ncol2=15; w=0; offset=6; strand=D; shift=7; score=0.564508; -------acACACrCACACrca--- ; cor=; Ncor= a 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 0 0 c 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 0 0 g 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 0 0 t 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0 0 0

oligos_7nt_mkv5_m4_shift12 (oligos_7nt_mkv5_m4)
; positions_7nt_m8 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=11; strand=D; shift=12; score=0.522508; ------------caCACAcACACac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 c 0 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 g 0 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 t 0 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279

oligos_7nt_mkv5_m5_shift8 (oligos_7nt_mkv5_m5)
; positions_7nt_m8 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=7; strand=D; shift=8; score= 0.4984; --------caCACGCACACmca--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 c 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 g 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 t 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0

dyads_m9_shift4 (dyads_m9)
; positions_7nt_m8 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=3; strand=D; shift=4; score=0.497163; ----caAACACACACmca------- ; cor=; Ncor= a 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 c 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 g 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 t 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0

dyads_m4_shift4 (dyads_m4)
; positions_7nt_m8 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=3; strand=D; shift=4; score=0.496196; ----camACACACrCaC-------- ; cor=; Ncor= a 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 c 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 g 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 t 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0

dyads_m6_shift4 (dyads_m6)
; positions_7nt_m8 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=3; strand=D; shift=4; score=0.480567; ----camACACACAyac-------- ; cor=; Ncor= a 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 c 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 g 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 t 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m9_shift12 (oligos_7nt_mkv5_m9)
; positions_7nt_m8 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=11; strand=D; shift=12; score=0.434797; ------------caCAsACACAAam ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 c 0 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 g 0 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 t 0 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m1_shift2 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m1_shift2 (oligos_7nt_mkv5_m1)
; oligos_7nt_mkv5_m1; m=0 (reference); ncol1=11; shift=2; ncol=13; --maAACACAAmm ; Alignment reference a 0 0 623 573 1802 1747 96 1720 81 1680 1767 555 640 c 0 0 544 437 1 22 1609 67 1586 57 20 518 599 g 0 0 384 449 28 54 61 58 114 51 39 350 326 t 0 0 329 421 49 57 114 35 99 92 54 457 315

oligos_7nt_mkv5_m1_shift2 (oligos_7nt_mkv5_m1)
; oligos_7nt_mkv5_m1 versus oligos_7nt_mkv5_m1; m=1/3; ncol2=11; w=0; offset=0; strand=D; shift=2; score= 1; --maAACACAAmm ; cor=; Ncor= a 0 0 623 573 1802 1747 96 1720 81 1680 1767 555 640 c 0 0 544 437 1 22 1609 67 1586 57 20 518 599 g 0 0 384 449 28 54 61 58 114 51 39 350 326 t 0 0 329 421 49 57 114 35 99 92 54 457 315

oligos_7nt_mkv5_m9_shift0 (oligos_7nt_mkv5_m9)
; oligos_7nt_mkv5_m1 versus oligos_7nt_mkv5_m9; m=2/3; ncol2=13; w=-2; offset=-2; strand=D; shift=0; score=0.64976; caCAsACACAAam ; cor=; Ncor= a 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 c 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 g 315 389 183 111 1213 34 68 39 57 49 71 334 324 t 284 218 140 71 96 15 49 13 26 35 42 323 270

oligos_6nt_mkv4_m4_shift1 (oligos_6nt_mkv4_m4)
; oligos_7nt_mkv5_m1 versus oligos_6nt_mkv4_m4; m=3/3; ncol2=11; w=-1; offset=-1; strand=D; shift=1; score=0.586311; -ammAACACCmc- ; cor=; Ncor= a 0 603 434 886 1461 1470 34 1378 0 0 542 381 0 c 0 379 473 435 6 49 1453 126 1550 1575 416 540 0 g 0 284 341 132 31 32 32 22 11 3 328 294 0 t 0 322 340 135 90 37 69 62 27 10 302 373 0

One-to-n matrix alignment; reference matrix: dyads_m6_shift11 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m6_shift11 (dyads_m6)
; dyads_m6; m=0 (reference); ncol1=13; shift=11; ncol=24; -----------camACACACAyac ; Alignment reference a 0 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 c 0 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 g 0 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 t 0 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355

dyads_m6_shift11 (dyads_m6)
; dyads_m6 versus dyads_m6; m=1/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score= 1; -----------camACACACAyac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 c 0 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 g 0 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 t 0 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355

dyads_m4_shift11 (dyads_m4)
; dyads_m6 versus dyads_m4; m=2/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score=0.86598; -----------camACACACrCaC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 c 0 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 g 0 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 t 0 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355

oligos_7nt_mkv5_m4_shift11 (oligos_7nt_mkv5_m4)
; dyads_m6 versus oligos_7nt_mkv5_m4; m=3/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score=0.858881; -----------caCACAcACACac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 c 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 g 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 t 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279

dyads_m9_shift11 (dyads_m9)
; dyads_m6 versus dyads_m9; m=4/33; ncol2=14; w=0; offset=0; strand=D; shift=11; score=0.845845; -----------caAACACACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 c 0 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 g 0 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 t 0 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373

dyads_m7_shift11 (dyads_m7)
; dyads_m6 versus dyads_m7; m=5/33; ncol2=15; w=0; offset=0; strand=D; shift=11; score=0.786561; -----------camACACACACrC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 c 0 0 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 g 0 0 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 t 0 0 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135

oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)
; dyads_m6 versus oligos_7nt_mkv5_m9; m=6/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score=0.76923; -----------caCAsACACAAam ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270

oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)
; dyads_m6 versus oligos_7nt_mkv5_m8; m=7/33; ncol2=16; w=-3; offset=-3; strand=D; shift=8; score=0.707559; --------ACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224

oligos_7nt_mkv5_m5_shift11 (oligos_7nt_mkv5_m5)
; dyads_m6 versus oligos_7nt_mkv5_m5; m=8/33; ncol2=14; w=0; offset=0; strand=D; shift=11; score=0.704792; -----------caCACGCACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 c 0 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 g 0 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 t 0 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418

positions_6nt_m1_shift10 (positions_6nt_m1)
; dyads_m6 versus positions_6nt_m1; m=9/33; ncol2=15; w=-1; offset=-1; strand=D; shift=10; score= 0.6762; ----------acACACrCACACrc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 c 0 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 g 0 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 t 0 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605

oligos_6nt_mkv4_m5_rc_shift10 (oligos_6nt_mkv4_m5_rc)
; dyads_m6 versus oligos_6nt_mkv4_m5_rc; m=10/33; ncol2=16; w=-1; offset=-1; strand=R; shift=10; score=0.651583; ----------acAsACACrCACAs ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 c 0 0 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 g 0 0 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 t 0 0 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62

dyads_m10_shift10 (dyads_m10)
; dyads_m6 versus dyads_m10; m=11/33; ncol2=18; w=-1; offset=-1; strand=D; shift=10; score=0.638382; ----------ACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 c 0 0 0 0 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 g 0 0 0 0 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 t 0 0 0 0 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221

oligos_6nt_mkv4_m2_shift9 (oligos_6nt_mkv4_m2)
; dyads_m6 versus oligos_6nt_mkv4_m2; m=12/33; ncol2=16; w=-2; offset=-2; strand=D; shift=9; score=0.636311; ---------caCwCACAyACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 c 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 g 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 t 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362

positions_6nt_m10_shift9 (positions_6nt_m10)
; dyads_m6 versus positions_6nt_m10; m=13/33; ncol2=24; w=-2; offset=-2; strand=D; shift=9; score=0.503549; ---------cacamACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 c 0 0 0 0 0 0 0 0 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 g 0 0 0 0 0 0 0 0 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 t 0 0 0 0 0 0 0 0 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168

positions_6nt_m6_shift10 (positions_6nt_m6)
; dyads_m6 versus positions_6nt_m6; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=10; score=0.500773; ----------acamACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 c 0 0 0 0 0 0 0 0 0 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 g 0 0 0 0 0 0 0 0 0 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 t 0 0 0 0 0 0 0 0 0 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229

positions_6nt_m8_shift9 (positions_6nt_m8)
; dyads_m6 versus positions_6nt_m8; m=15/33; ncol2=23; w=-2; offset=-2; strand=D; shift=9; score=0.496034; ---------caCACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 c 0 0 0 0 0 0 0 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 g 0 0 0 0 0 0 0 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 t 0 0 0 0 0 0 0 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524

positions_6nt_m2_shift7 (positions_6nt_m2)
; dyads_m6 versus positions_6nt_m2; m=16/33; ncol2=24; w=-4; offset=-4; strand=D; shift=7; score=0.494766; -------caCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 c 0 0 0 0 0 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 g 0 0 0 0 0 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 t 0 0 0 0 0 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322

positions_7nt_m2_shift11 (positions_7nt_m2)
; dyads_m6 versus positions_7nt_m2; m=17/33; ncol2=24; w=0; offset=0; strand=D; shift=11; score=0.489006; -----------cacACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 c 0 0 0 0 0 0 0 0 0 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 g 0 0 0 0 0 0 0 0 0 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 t 0 0 0 0 0 0 0 0 0 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215

positions_6nt_m9_shift8 (positions_6nt_m9)
; dyads_m6 versus positions_6nt_m9; m=18/33; ncol2=24; w=-3; offset=-3; strand=D; shift=8; score=0.483325; --------acaCacACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 c 0 0 0 0 0 0 0 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 g 0 0 0 0 0 0 0 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 t 0 0 0 0 0 0 0 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193

positions_7nt_m10_shift10 (positions_7nt_m10)
; dyads_m6 versus positions_7nt_m10; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=10; score=0.482925; ----------acACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 c 0 0 0 0 0 0 0 0 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 g 0 0 0 0 0 0 0 0 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 t 0 0 0 0 0 0 0 0 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317

positions_7nt_m6_shift10 (positions_7nt_m6)
; dyads_m6 versus positions_7nt_m6; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=10; score=0.482192; ----------acaCACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 c 0 0 0 0 0 0 0 0 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 g 0 0 0 0 0 0 0 0 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 t 0 0 0 0 0 0 0 0 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364

positions_7nt_m3_rc_shift3 (positions_7nt_m3_rc)
; dyads_m6 versus positions_7nt_m3_rc; m=21/33; ncol2=24; w=-8; offset=-8; strand=R; shift=3; score=0.48145; ---cacACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 c 0 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 g 0 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 t 0 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536

positions_7nt_m7_shift7 (positions_7nt_m7)
; dyads_m6 versus positions_7nt_m7; m=22/33; ncol2=24; w=-4; offset=-4; strand=D; shift=7; score=0.481439; -------caCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 c 0 0 0 0 0 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 g 0 0 0 0 0 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 t 0 0 0 0 0 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401

positions_7nt_m1_shift11 (positions_7nt_m1)
; dyads_m6 versus positions_7nt_m1; m=23/33; ncol2=24; w=0; offset=0; strand=D; shift=11; score=0.481126; -----------cacACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 c 0 0 0 0 0 0 0 0 0 0 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 g 0 0 0 0 0 0 0 0 0 0 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 t 0 0 0 0 0 0 0 0 0 0 0 1042 717 741 296 338 185 227 149 258 277 195 76 212

positions_7nt_m8_shift8 (positions_7nt_m8)
; dyads_m6 versus positions_7nt_m8; m=24/33; ncol2=24; w=-3; offset=-3; strand=D; shift=8; score=0.480567; --------acACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 c 0 0 0 0 0 0 0 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 g 0 0 0 0 0 0 0 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 t 0 0 0 0 0 0 0 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389

dyads_m8_shift7 (dyads_m8)
; dyads_m6 versus dyads_m8; m=25/33; ncol2=24; w=-4; offset=-4; strand=D; shift=7; score=0.480159; -------CaCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 c 0 0 0 0 0 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 g 0 0 0 0 0 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 t 0 0 0 0 0 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289

positions_7nt_m4_shift1 (positions_7nt_m4)
; dyads_m6 versus positions_7nt_m4; m=26/33; ncol2=24; w=-10; offset=-10; strand=D; shift=1; score=0.47715; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297

dyads_m1_shift11 (dyads_m1)
; dyads_m6 versus dyads_m1; m=27/33; ncol2=24; w=0; offset=0; strand=D; shift=11; score=0.475484; -----------cacACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 c 0 0 0 0 0 0 0 0 0 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 g 0 0 0 0 0 0 0 0 0 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 t 0 0 0 0 0 0 0 0 0 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236

positions_7nt_m9_shift3 (positions_7nt_m9)
; dyads_m6 versus positions_7nt_m9; m=28/33; ncol2=24; w=-8; offset=-8; strand=D; shift=3; score=0.47542; ---caCACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 c 0 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 g 0 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 t 0 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783

positions_6nt_m7_shift5 (positions_6nt_m7)
; dyads_m6 versus positions_6nt_m7; m=29/33; ncol2=24; w=-6; offset=-6; strand=D; shift=5; score=0.474485; -----caCaCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 c 0 0 0 0 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 g 0 0 0 0 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 t 0 0 0 0 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420

positions_7nt_m5_shift4 (positions_7nt_m5)
; dyads_m6 versus positions_7nt_m5; m=30/33; ncol2=24; w=-7; offset=-7; strand=D; shift=4; score=0.474462; ----acaCACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 c 0 0 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 g 0 0 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 t 0 0 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493

positions_6nt_m4_shift0 (positions_6nt_m4)
; dyads_m6 versus positions_6nt_m4; m=31/33; ncol2=24; w=-11; offset=-11; strand=D; shift=0; score=0.472149; acrCACACACACACACACACACac ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762

positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)
; dyads_m6 versus positions_6nt_m3_rc; m=32/33; ncol2=24; w=-11; offset=-11; strand=R; shift=0; score=0.470899; mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706

positions_6nt_m5_rc_shift10 (positions_6nt_m5_rc)
; dyads_m6 versus positions_6nt_m5_rc; m=33/33; ncol2=24; w=-1; offset=-1; strand=R; shift=10; score=0.469681; ----------acaCACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 c 0 0 0 0 0 0 0 0 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 g 0 0 0 0 0 0 0 0 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 t 0 0 0 0 0 0 0 0 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332

One-to-n matrix alignment; reference matrix: positions_6nt_m2_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m2_shift1 (positions_6nt_m2)
; positions_6nt_m2; m=0 (reference); ncol1=24; shift=1; ncol=25; -caCACACACACACACACACACaca ; Alignment reference a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111

positions_6nt_m2_shift1 (positions_6nt_m2)
; positions_6nt_m2 versus positions_6nt_m2; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111

positions_7nt_m7_shift1 (positions_7nt_m7)
; positions_6nt_m2 versus positions_7nt_m7; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.996245; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231

dyads_m8_shift1 (dyads_m8)
; positions_6nt_m2 versus dyads_m8; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991818; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988

positions_7nt_m4_shift1 (positions_7nt_m4)
; positions_6nt_m2 versus positions_7nt_m4; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989888; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233

dyads_m1_shift1 (dyads_m1)
; positions_6nt_m2 versus dyads_m1; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989545; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002

positions_7nt_m9_shift1 (positions_7nt_m9)
; positions_6nt_m2 versus positions_7nt_m9; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987055; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216

positions_7nt_m2_shift1 (positions_7nt_m2)
; positions_6nt_m2 versus positions_7nt_m2; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.986339; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894

positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)
; positions_6nt_m2 versus positions_7nt_m3_rc; m=8/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.98577; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888

positions_7nt_m1_shift1 (positions_7nt_m1)
; positions_6nt_m2 versus positions_7nt_m1; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984898; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835

positions_6nt_m7_shift1 (positions_6nt_m7)
; positions_6nt_m2 versus positions_6nt_m7; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.983399; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062

positions_6nt_m10_shift1 (positions_6nt_m10)
; positions_6nt_m2 versus positions_6nt_m10; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.978814; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785

positions_6nt_m8_shift1 (positions_6nt_m8)
; positions_6nt_m2 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.946964; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0

positions_7nt_m8_shift0 (positions_7nt_m8)
; positions_6nt_m2 versus positions_7nt_m8; m=13/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.911396; acACACACACACACACACACACac- ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 0 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 0 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 0 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444 0

positions_6nt_m4_shift0 (positions_6nt_m4)
; positions_6nt_m2 versus positions_6nt_m4; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.911324; acrCACACACACACACACACACac- ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 0 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 0 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 0 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762 0

positions_7nt_m5_shift0 (positions_7nt_m5)
; positions_6nt_m2 versus positions_7nt_m5; m=15/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908713; acaCACACACACACACACACACac- ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 0 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 0 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 0 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250 0

positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)
; positions_6nt_m2 versus positions_6nt_m5_rc; m=16/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.908298; acaCACACACACACACACACACac- ; cor=; Ncor= a 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 0 c 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 0 g 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 0 t 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346 0

positions_6nt_m6_shift0 (positions_6nt_m6)
; positions_6nt_m2 versus positions_6nt_m6; m=17/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.907272; acamACACACACACACACACACac- ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 0 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 0 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 0 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141 0

positions_7nt_m10_shift0 (positions_7nt_m10)
; positions_6nt_m2 versus positions_7nt_m10; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.906762; acACACACACACACACACACACaC- ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 0 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 0 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 0 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221 0

positions_7nt_m6_shift0 (positions_7nt_m6)
; positions_6nt_m2 versus positions_7nt_m6; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.906504; acaCACACACACACACACACACac- ; cor=; Ncor= a 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 0 c 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 0 g 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 0 t 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314 0

positions_6nt_m9_shift0 (positions_6nt_m9)
; positions_6nt_m2 versus positions_6nt_m9; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.904567; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0

positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)
; positions_6nt_m2 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.861808; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0

dyads_m10_shift4 (dyads_m10)
; positions_6nt_m2 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=3; strand=D; shift=4; score=0.737685; ----ACACACACACACACrCAC--- ; cor=; Ncor= a 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 0 0 c 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 0 0 g 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 0 0 t 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0 0 0

oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)
; positions_6nt_m2 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=7; strand=D; shift=8; score=0.662497; --------ACACACACACACACAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0

oligos_6nt_mkv4_m2_shift7 (oligos_6nt_mkv4_m2)
; positions_6nt_m2 versus oligos_6nt_mkv4_m2; m=24/33; ncol2=16; w=0; offset=6; strand=D; shift=7; score=0.608752; -------caCwCACAyACACmca-- ; cor=; Ncor= a 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 0 c 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 0 g 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 0 t 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0 0

oligos_6nt_mkv4_m5_rc_shift8 (oligos_6nt_mkv4_m5_rc)
; positions_6nt_m2 versus oligos_6nt_mkv4_m5_rc; m=25/33; ncol2=16; w=0; offset=7; strand=R; shift=8; score=0.601289; --------acAsACACrCACAsac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 c 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 g 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 t 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0

positions_6nt_m1_shift10 (positions_6nt_m1)
; positions_6nt_m2 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=9; strand=D; shift=10; score=0.565244; ----------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601

dyads_m7_shift5 (dyads_m7)
; positions_6nt_m2 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=4; strand=D; shift=5; score=0.564635; -----camACACACACrCac----- ; cor=; Ncor= a 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 c 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 g 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 t 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0

oligos_7nt_mkv5_m4_shift9 (oligos_7nt_mkv5_m4)
; positions_6nt_m2 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=8; strand=D; shift=9; score=0.526094; ---------caCACAcACACac--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 0 c 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 0 g 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 0 t 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0 0

dyads_m9_shift5 (dyads_m9)
; positions_6nt_m2 versus dyads_m9; m=29/33; ncol2=14; w=0; offset=4; strand=D; shift=5; score=0.496152; -----caAACACACACmca------ ; cor=; Ncor= a 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 c 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 g 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 t 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0

dyads_m6_shift5 (dyads_m6)
; positions_6nt_m2 versus dyads_m6; m=30/33; ncol2=13; w=0; offset=4; strand=D; shift=5; score=0.494766; -----camACACACAyac------- ; cor=; Ncor= a 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 c 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 g 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 t 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0

oligos_7nt_mkv5_m5_shift11 (oligos_7nt_mkv5_m5)
; positions_6nt_m2 versus oligos_7nt_mkv5_m5; m=31/33; ncol2=14; w=0; offset=10; strand=D; shift=11; score=0.490066; -----------caCACGCACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 c 0 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 g 0 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 t 0 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501

dyads_m4_shift5 (dyads_m4)
; positions_6nt_m2 versus dyads_m4; m=32/33; ncol2=13; w=0; offset=4; strand=D; shift=5; score=0.479571; -----camACACACrCaC------- ; cor=; Ncor= a 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 c 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 g 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 t 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0

oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)
; positions_6nt_m2 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.443916; -----------caCAsACACAAam- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0

One-to-n matrix alignment; reference matrix: dyads_m5_shift1 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m5_shift1 (dyads_m5)
; dyads_m5; m=0 (reference); ncol1=11; shift=1; ncol=12; -ccACCACCAcc ; Alignment reference a 0 849 627 3918 50 30 4141 38 14 3899 676 705 c 0 2252 2408 191 4112 4096 103 4058 4126 239 2169 2498 g 0 690 543 129 102 115 126 110 85 188 692 474 t 0 681 894 234 208 231 102 266 247 146 935 795

dyads_m5_shift1 (dyads_m5)
; dyads_m5 versus dyads_m5; m=1/4; ncol2=11; w=0; offset=0; strand=D; shift=1; score= 1; -ccACCACCAcc ; cor=; Ncor= a 0 849 627 3918 50 30 4141 38 14 3899 676 705 c 0 2252 2408 191 4112 4096 103 4058 4126 239 2169 2498 g 0 690 543 129 102 115 126 110 85 188 692 474 t 0 681 894 234 208 231 102 266 247 146 935 795

oligos_6nt_mkv4_m1_shift1 (oligos_6nt_mkv4_m1)
; dyads_m5 versus oligos_6nt_mkv4_m1; m=2/4; ncol2=11; w=0; offset=0; strand=D; shift=1; score=0.706608; -cycCCACAAmm ; cor=; Ncor= a 0 354 335 306 0 2 1250 50 1267 1364 427 379 c 0 516 530 804 1437 1382 94 1304 72 17 444 541 g 0 254 207 179 0 16 42 44 36 33 264 277 t 0 320 372 155 7 44 58 46 69 30 309 247

oligos_7nt_mkv5_m3_shift2 (oligos_7nt_mkv5_m3)
; dyads_m5 versus oligos_7nt_mkv5_m3; m=3/4; ncol2=12; w=0; offset=1; strand=D; shift=2; score=0.669122; --caCCAmCACC ; cor=; Ncor= a 0 0 537 1591 66 86 2670 1679 63 2659 69 354 c 0 0 1526 481 2678 2677 71 919 2713 103 2669 2209 g 0 0 300 368 59 42 43 104 15 52 63 104 t 0 0 489 412 49 47 68 150 61 38 51 185

oligos_6nt_mkv4_m4_shift0 (oligos_6nt_mkv4_m4)
; dyads_m5 versus oligos_6nt_mkv4_m4; m=4/4; ncol2=11; w=-1; offset=-1; strand=D; shift=0; score=0.593343; ammAACACCmc- ; cor=; Ncor= a 603 434 886 1461 1470 34 1378 0 0 542 381 0 c 379 473 435 6 49 1453 126 1550 1575 416 540 0 g 284 341 132 31 32 32 22 11 3 328 294 0 t 322 340 135 90 37 69 62 27 10 302 373 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m10_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m10_shift0 (oligos_6nt_mkv4_m10)
; oligos_6nt_mkv4_m10; m=0 (reference); ncol1=12; shift=0; ncol=12; rrAAGCAAcgvr ; Alignment reference a 589 587 1758 1825 53 108 1816 1760 386 322 537 607 c 425 404 74 41 44 1659 28 38 1074 268 486 435 g 571 645 48 40 1811 132 55 87 288 1155 600 504 t 354 303 59 33 31 40 40 54 191 194 316 393

oligos_6nt_mkv4_m10_shift0 (oligos_6nt_mkv4_m10)
; oligos_6nt_mkv4_m10 versus oligos_6nt_mkv4_m10; m=1/1; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; rrAAGCAAcgvr ; cor=; Ncor= a 589 587 1758 1825 53 108 1816 1760 386 322 537 607 c 425 404 74 41 44 1659 28 38 1074 268 486 435 g 571 645 48 40 1811 132 55 87 288 1155 600 504 t 354 303 59 33 31 40 40 54 191 194 316 393

One-to-n matrix alignment; reference matrix: positions_7nt_m3_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m3_shift1 (positions_7nt_m3)
; positions_7nt_m3; m=0 (reference); ncol1=24; shift=1; ncol=25; -tGTGTGTGTGTGTGTGTGTGTgtg ; Alignment reference a 0 888 963 461 536 226 1564 180 293 127 244 96 220 105 246 267 248 144 260 184 326 294 1779 767 1109 c 0 1351 874 789 386 460 344 358 128 215 77 271 55 232 87 1392 111 276 102 429 167 498 385 1201 700 g 0 905 6174 469 7546 225 6546 139 8227 64 8363 43 8415 47 8319 124 8240 82 8182 167 7963 345 5777 1038 5670 t 0 5629 762 7054 305 7862 319 8096 125 8367 89 8363 83 8389 121 6990 174 8271 229 7993 317 7636 832 5767 1294

positions_7nt_m3_shift1 (positions_7nt_m3)
; positions_7nt_m3 versus positions_7nt_m3; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -tGTGTGTGTGTGTGTGTGTGTgtg ; cor=; Ncor= a 0 888 963 461 536 226 1564 180 293 127 244 96 220 105 246 267 248 144 260 184 326 294 1779 767 1109 c 0 1351 874 789 386 460 344 358 128 215 77 271 55 232 87 1392 111 276 102 429 167 498 385 1201 700 g 0 905 6174 469 7546 225 6546 139 8227 64 8363 43 8415 47 8319 124 8240 82 8182 167 7963 345 5777 1038 5670 t 0 5629 762 7054 305 7862 319 8096 125 8367 89 8363 83 8389 121 6990 174 8271 229 7993 317 7636 832 5767 1294

dyads_m1_rc_shift1 (dyads_m1_rc)
; positions_7nt_m3 versus dyads_m1_rc; m=2/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.995833; -tGtGTGTGTGTGTGTGTGTGTgtg ; cor=; Ncor= a 0 1002 1034 1501 387 306 291 196 269 114 261 120 236 111 209 270 239 136 254 218 329 304 1781 800 1127 c 0 1428 923 1040 286 452 110 335 103 242 85 347 63 223 70 1314 112 278 109 422 174 550 394 1153 699 g 0 961 6084 540 7832 172 8254 96 8296 47 8335 46 8404 42 8405 134 8271 99 8198 179 7980 362 5772 1069 5685 t 0 5400 750 5710 286 7861 136 8164 123 8388 110 8278 88 8415 107 7073 169 8278 230 7972 308 7575 844 5769 1280

positions_7nt_m2_rc_shift1 (positions_7nt_m2_rc)
; positions_7nt_m3 versus positions_7nt_m2_rc; m=3/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.995373; -tGTGTGTGTGTGTGTGTGTGTgtg ; cor=; Ncor= a 0 894 970 487 564 248 1509 149 276 111 260 84 215 249 231 126 208 132 256 144 323 247 782 738 1048 c 0 1394 902 772 424 457 379 335 105 320 82 212 68 1356 100 243 80 342 101 361 164 486 357 1108 759 g 0 947 6171 492 7523 255 6600 130 8357 61 8409 35 8459 116 8362 64 8364 59 8219 166 7949 392 5719 1162 5649 t 0 5592 784 7076 316 7867 339 8213 89 8335 76 8496 85 7106 134 8394 175 8294 251 8156 391 7702 1969 5819 1371

positions_7nt_m1_rc_shift1 (positions_7nt_m1_rc)
; positions_7nt_m3 versus positions_7nt_m1_rc; m=4/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.994441; -tGTGTGTGTGTGTGTGTGTGTgtg ; cor=; Ncor= a 0 835 882 469 306 163 307 147 1313 120 219 92 212 76 195 277 258 149 227 185 338 296 741 717 1042 c 0 1236 789 702 195 364 142 336 247 224 102 258 48 194 64 1329 135 291 101 426 146 506 367 1070 699 g 0 847 6045 381 7681 128 7824 115 6542 74 7992 50 8052 33 8024 162 7821 93 7819 142 7519 416 5354 1145 5326 t 0 5474 676 6840 210 7737 119 7794 290 7974 79 7992 80 8089 109 6624 178 7859 245 7639 389 7174 1930 5460 1325

positions_7nt_m9_rc_shift1 (positions_7nt_m9_rc)
; positions_7nt_m3 versus positions_7nt_m9_rc; m=5/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.993812; -tGTGTGTGTGTGTGTGTGTGTGtg ; cor=; Ncor= a 0 1216 1316 715 783 406 1897 235 393 183 379 131 290 372 339 215 319 301 392 352 500 1229 1082 1219 1492 c 0 1899 1199 1124 580 684 490 445 162 446 113 311 114 1786 152 319 121 508 126 546 258 1409 564 1628 933 g 0 1299 7853 718 9602 363 8573 183 10752 97 10823 59 10909 170 10756 82 10771 118 10624 268 10214 830 8663 1385 7348 t 0 7027 1073 8884 476 9988 481 10578 134 10715 126 10940 128 9113 194 10825 230 10514 299 10275 469 7973 1132 7209 1668

positions_6nt_m7_rc_shift1 (positions_6nt_m7_rc)
; positions_7nt_m3 versus positions_6nt_m7_rc; m=6/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score= 0.9925; -tGTGTGTGTGTGTGTGTGTGtGtg ; cor=; Ncor= a 0 1062 1139 443 454 215 420 213 1568 170 308 147 305 157 300 422 371 346 376 454 545 1221 1008 1222 1455 c 0 1569 929 638 266 464 187 432 337 321 122 358 82 271 101 1757 187 466 144 685 240 1326 586 1507 886 g 0 1035 7623 359 9528 164 9726 148 8217 116 9958 72 10013 69 9933 237 9672 182 9649 280 9231 861 7767 1373 6562 t 0 6838 813 9064 256 9661 171 9711 382 9897 116 9927 104 10007 170 8088 274 9510 335 9085 488 7096 1143 6402 1601

positions_7nt_m7_rc_shift1 (positions_7nt_m7_rc)
; positions_7nt_m3 versus positions_7nt_m7_rc; m=7/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.99001; -tgtGTGTGTGTGTGTGTGTGTGtg ; cor=; Ncor= a 0 1231 1313 959 554 331 436 187 401 199 817 182 314 135 304 145 334 203 1521 269 448 449 777 941 1369 c 0 1916 1206 1469 450 568 204 436 152 397 326 293 137 253 101 244 113 357 318 489 227 828 404 1512 847 g 0 1302 7165 1248 9398 253 9946 141 10080 137 8742 120 10208 66 10219 95 10138 164 8324 284 9700 527 8738 1199 7015 t 0 6347 1112 7120 394 9644 210 10032 163 10063 911 10201 137 10342 172 10312 211 10072 633 9754 421 8992 877 7144 1565

positions_7nt_m4_rc_shift1 (positions_7nt_m4_rc)
; positions_7nt_m3 versus positions_7nt_m4_rc; m=8/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.988097; -tgtGTGTGTGTGTGTGTGTGTGtg ; cor=; Ncor= a 0 1233 1297 1386 528 408 419 221 364 172 386 170 683 161 267 174 310 209 375 511 491 441 579 971 1306 c 0 1807 1159 1410 418 542 189 395 129 367 149 384 285 230 110 350 102 362 160 2101 245 670 306 1594 789 g 0 1221 6838 792 8981 245 9472 132 9630 72 9579 113 8427 133 9771 81 9691 123 9474 394 9162 397 8807 1027 6774 t 0 6019 986 6692 353 9085 200 9532 157 9669 166 9613 885 9756 132 9675 177 9586 271 7274 382 8772 588 6688 1411

dyads_m8_rc_shift1 (dyads_m8_rc)
; positions_7nt_m3 versus dyads_m8_rc; m=9/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.986108; -tGyGTGTGTGTGTGTGTGTGTGtG ; cor=; Ncor= a 0 988 1049 644 404 281 324 145 289 144 1269 131 238 112 194 102 230 146 276 353 301 307 396 774 1010 c 0 1578 909 2296 346 518 155 430 135 327 255 292 103 168 59 258 66 279 115 1646 156 524 212 1258 588 g 0 944 5955 537 7677 211 8040 91 8166 96 6905 80 8262 52 8374 44 8298 71 8105 259 7977 263 7630 782 6008 t 0 5206 803 5239 289 7706 197 8050 126 8149 287 8213 113 8384 89 8312 122 8220 220 6458 282 7622 478 5902 1110

positions_6nt_m2_rc_shift1 (positions_6nt_m2_rc)
; positions_7nt_m3 versus positions_6nt_m2_rc; m=10/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.98577; -tgtGTGTGTGTGTGTGTGTGTGtg ; cor=; Ncor= a 0 1111 1256 1027 1006 336 335 138 322 130 1646 160 286 107 228 68 251 154 683 379 627 540 904 973 1339 c 0 1827 1211 1449 814 422 201 272 128 270 304 255 102 181 87 181 80 260 322 633 409 747 542 1442 900 g 0 1360 6633 1249 7183 313 9532 107 9678 117 7946 85 9760 60 9816 64 9728 189 7492 566 8487 663 7674 1249 6338 t 0 5953 1151 6526 1248 9180 183 9734 123 9734 355 9751 103 9903 120 9938 192 9648 1754 8673 728 8301 1131 6587 1674

positions_6nt_m10_rc_shift1 (positions_6nt_m10_rc)
; positions_7nt_m3 versus positions_6nt_m10_rc; m=11/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.982075; -tGTGTGTGTGTGTGTGTGTktgtg ; cor=; Ncor= a 0 785 908 478 506 355 625 113 208 49 168 68 1366 81 175 86 169 68 256 193 665 553 860 902 1108 c 0 1260 756 755 375 518 335 164 90 130 66 140 186 142 74 169 69 206 99 346 352 841 678 984 852 g 0 875 5653 483 6829 333 6383 105 7675 40 7756 67 6248 72 7720 78 7668 106 7423 329 4819 1675 4643 1435 4474 t 0 5158 761 6362 368 6872 735 7696 105 7859 88 7803 278 7783 109 7745 172 7698 300 7210 2242 5009 1897 4757 1644

positions_6nt_m8_rc_shift2 (positions_6nt_m8_rc)
; positions_7nt_m3 versus positions_6nt_m8_rc; m=12/33; ncol2=23; w=0; offset=1; strand=R; shift=2; score=0.944211; --gtGTGTGTGTGTGTGTGTGTGtg ; cor=; Ncor= a 0 0 2027 1903 1470 1957 604 497 484 365 524 569 504 339 344 386 416 450 498 1550 1248 1274 1522 1827 2108 c 0 0 1746 2595 1257 1950 373 939 152 663 182 2809 217 484 129 687 144 545 238 1753 614 1626 934 2346 1392 g 0 0 10165 1687 11817 975 14341 246 14838 109 14777 257 14687 93 14960 95 14844 217 14478 861 12569 1235 11540 2041 9716 t 0 0 1738 9491 1132 10794 358 13994 202 14539 193 12041 268 14760 243 14508 272 14464 462 11512 1245 11541 1680 9462 2460

positions_7nt_m5_rc_shift2 (positions_7nt_m5_rc)
; positions_7nt_m3 versus positions_7nt_m5_rc; m=13/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.913257; --gtGTGTGTGTGTGTGTGTGTGtg ; cor=; Ncor= a 0 0 1250 994 561 341 493 287 1613 213 397 172 334 119 291 341 371 214 368 280 461 360 618 826 1388 c 0 0 1186 1587 433 624 243 588 371 397 146 427 107 288 103 1667 160 370 137 524 163 587 309 1405 770 g 0 0 7163 872 9224 281 9623 225 8200 138 9935 76 10047 63 10067 195 9846 124 9804 184 9612 358 9032 1361 7006 t 0 0 1002 7148 383 9355 242 9501 417 9853 123 9926 113 10131 140 8398 224 9893 292 9613 365 9296 642 7009 1437

positions_6nt_m6_rc_shift2 (positions_6nt_m6_rc)
; positions_7nt_m3 versus positions_6nt_m6_rc; m=14/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.910612; --gtGTGTGTGTGTGTGTGTGTktg ; cor=; Ncor= a 0 0 1141 950 717 498 618 395 780 130 292 75 229 101 1501 114 239 123 247 122 347 283 875 740 1210 c 0 0 1161 1492 605 871 391 690 410 210 131 182 86 192 236 209 102 223 100 302 144 454 438 1147 919 g 0 0 6364 924 7757 467 8244 354 7685 119 9116 51 9244 98 7597 92 9166 88 9073 157 8796 453 5914 1781 5883 t 0 0 997 6297 584 7827 410 8224 788 9204 124 9355 104 9272 329 9248 156 9229 243 9082 376 8473 2436 5995 1651

positions_6nt_m5_shift2 (positions_6nt_m5)
; positions_7nt_m3 versus positions_6nt_m5; m=15/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.909078; --gtGTGTGTGTGTGTGTGTGTGtg ; cor=; Ncor= a 0 0 1346 1032 551 401 483 289 514 399 451 199 332 158 302 182 1358 236 377 309 443 396 617 1189 1451 c 0 0 1227 1705 484 910 233 703 215 2098 217 435 134 432 125 324 309 401 164 435 171 606 309 1478 812 g 0 0 7409 910 9651 267 10093 179 10142 222 10215 79 10428 65 10505 130 8894 160 10240 223 10110 367 9570 1033 7325 t 0 0 1092 7427 388 9496 265 9903 203 8355 191 10361 180 10419 142 10438 513 10277 293 10107 350 9705 578 7374 1486

positions_7nt_m6_rc_shift0 (positions_7nt_m6_rc)
; positions_7nt_m3 versus positions_7nt_m6_rc; m=16/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.908923; gtGTGTGTGTGTGTGTGTGTGtgt- ; cor=; Ncor= a 1314 1108 658 508 613 555 529 276 426 168 364 178 1359 192 368 226 377 261 446 417 657 1186 1422 1250 0 c 1321 2020 523 984 308 2529 270 577 151 527 144 329 263 351 141 309 140 451 175 604 291 1492 809 1571 0 g 7534 1002 9649 365 10096 354 10279 137 10526 78 10687 120 9276 117 10610 121 10549 168 10366 336 9778 1019 7570 1570 0 t 1149 7188 488 9461 301 7880 240 10328 215 10545 123 10691 420 10658 199 10662 252 10438 331 9961 592 7621 1517 6927 0

positions_7nt_m10_rc_shift2 (positions_7nt_m10_rc)
; positions_7nt_m3 versus positions_7nt_m10_rc; m=17/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.908799; --GtGTGTGTGTGTGTGTGTGTGTg ; cor=; Ncor= a 0 0 1221 1023 527 405 507 468 450 219 349 128 317 146 1478 154 334 249 368 304 438 1091 980 932 1407 c 0 0 1193 1920 393 861 230 2409 206 485 127 434 115 277 269 305 113 332 115 481 212 1255 509 1290 838 g 0 0 7628 898 9811 279 10121 280 10266 108 10453 63 10565 121 8961 100 10487 139 10395 213 10095 752 8605 1069 7310 t 0 0 1077 7278 388 9574 261 7962 197 10307 190 10494 122 10575 411 10560 185 10399 241 10121 374 8021 1025 7828 1564

positions_7nt_m8_rc_shift2 (positions_7nt_m8_rc)
; positions_7nt_m3 versus positions_7nt_m8_rc; m=18/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.90777; --gtGTGTGTGTGTGTGTGTGTGTg ; cor=; Ncor= a 0 0 1444 1222 1288 535 510 246 411 166 389 172 426 358 318 186 312 216 380 313 874 626 973 892 1632 c 0 0 1459 1853 1524 768 336 457 179 498 140 418 144 1997 165 363 142 547 183 542 484 976 688 1273 1023 g 0 0 8000 1299 8529 466 11129 175 11460 86 11558 62 11510 203 11550 81 11502 121 11271 382 8585 957 9320 1241 7685 t 0 0 1326 7855 888 10460 254 11351 179 11479 142 11577 149 9671 196 11599 273 11345 395 10992 2286 9670 1248 8823 1889

positions_6nt_m4_rc_shift0 (positions_6nt_m4_rc)
; positions_7nt_m3 versus positions_6nt_m4_rc; m=19/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.90771; gtGTGTGTGTGTGTGTGTGTGygt- ; cor=; Ncor= a 762 646 603 213 196 96 195 83 456 63 157 51 129 66 913 91 152 91 178 111 269 364 834 636 0 c 740 871 744 264 142 188 80 170 205 128 65 125 50 120 154 152 72 194 64 281 117 1750 462 917 0 g 4259 642 4643 168 5939 80 6014 65 5114 66 6086 32 6144 58 5055 64 6040 77 6019 127 5818 425 4330 793 0 t 621 4223 392 5737 105 6018 93 6064 607 6125 74 6174 59 6138 260 6075 118 6020 121 5863 178 3843 756 4036 0

positions_6nt_m9_rc_shift2 (positions_6nt_m9_rc)
; positions_7nt_m3 versus positions_6nt_m9_rc; m=20/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.899242; --gtGTGTGTGTGTGTGTGTgtGtg ; cor=; Ncor= a 0 0 1244 1142 820 1256 194 189 204 139 193 331 227 127 141 140 223 178 300 631 932 869 895 1035 1390 c 0 0 1023 1499 660 1051 129 337 54 217 60 1952 105 195 49 300 61 256 151 1076 540 1014 718 1117 953 g 0 0 6677 1066 7825 511 9519 85 9636 49 9623 131 9499 64 9641 71 9522 169 9166 1286 6536 1877 7182 1310 5987 t 0 0 1014 6251 653 7140 116 9347 64 9553 82 7544 127 9572 127 9447 152 9355 341 6965 1950 6198 1163 6496 1628

positions_6nt_m3_shift2 (positions_6nt_m3)
; positions_7nt_m3 versus positions_6nt_m3; m=21/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.855442; --gtGtGTGTGTGyGTGTGtkkkkk ; cor=; Ncor= a 0 0 706 680 497 902 143 113 101 66 117 72 126 244 108 119 146 143 227 472 711 663 797 820 1016 c 0 0 591 913 397 618 94 134 36 175 33 117 58 1474 68 153 60 282 133 842 437 698 669 700 902 g 0 0 3680 646 4351 350 5253 63 5414 32 5399 30 5324 123 5316 75 5255 126 4915 1228 2606 1991 2070 2228 2242 t 0 0 625 3363 357 3732 112 5292 51 5329 53 5383 94 3761 110 5255 141 5051 327 3060 1848 2250 2066 1854 1442

dyads_m10_rc_shift6 (dyads_m10_rc)
; positions_7nt_m3 versus dyads_m10_rc; m=22/33; ncol2=18; w=0; offset=5; strand=R; shift=6; score=0.735559; ------GTGyGTGTGTGTGTGTGT- ; cor=; Ncor= a 0 0 0 0 0 0 1123 902 380 480 221 201 229 125 245 110 261 88 252 141 2074 220 1055 739 0 c 0 0 0 0 0 0 877 1578 284 2725 180 355 87 269 69 179 64 171 86 208 286 342 600 1101 0 g 0 0 0 0 0 0 7303 744 9327 320 9671 113 9764 42 9807 58 9760 75 9753 129 7314 282 7513 1135 0 t 0 0 0 0 0 0 910 6989 222 6688 141 9544 133 9777 92 9866 128 9879 122 9735 539 9369 1045 7238 0

oligos_7nt_mkv5_m8_rc_shift4 (oligos_7nt_mkv5_m8_rc)
; positions_7nt_m3 versus oligos_7nt_mkv5_m8_rc; m=23/33; ncol2=16; w=0; offset=3; strand=R; shift=4; score=0.656356; ----GTGTGTGTGTGTGTGT----- ; cor=; Ncor= a 0 0 0 0 1224 929 839 201 176 67 180 73 1978 55 133 73 155 65 855 646 0 0 0 0 0 c 0 0 0 0 1137 1414 1684 216 131 141 98 144 261 127 82 126 68 157 434 1252 0 0 0 0 0 g 0 0 0 0 7805 1031 8182 199 10841 68 10901 61 8641 55 10953 81 10941 72 9006 930 0 0 0 0 0 t 0 0 0 0 1079 7871 540 10629 97 10969 66 10967 365 11008 77 10965 81 10951 950 8417 0 0 0 0 0

oligos_6nt_mkv4_m5_shift8 (oligos_6nt_mkv4_m5)
; positions_7nt_m3 versus oligos_6nt_mkv4_m5; m=24/33; ncol2=16; w=0; offset=7; strand=D; shift=8; score=0.604503; --------gtsTGTGyGTGTsTgt- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 214 180 62 30 40 21 22 21 20 16 41 12 98 13 202 129 0 c 0 0 0 0 0 0 0 0 294 260 792 62 50 39 43 1077 48 32 62 38 611 57 217 297 0 g 0 0 0 0 0 0 0 0 895 280 760 38 1580 14 1604 24 1593 23 1556 28 898 67 1041 211 0 t 0 0 0 0 0 0 0 0 294 977 83 1567 27 1623 28 575 36 1626 38 1619 90 1560 237 1060 0

oligos_6nt_mkv4_m2_rc_shift1 (oligos_6nt_mkv4_m2_rc)
; positions_7nt_m3 versus oligos_6nt_mkv4_m2_rc; m=25/33; ncol2=16; w=0; offset=0; strand=R; shift=1; score=0.592181; -tgkGTGTrTGTGwGtg-------- ; cor=; Ncor= a 0 421 362 158 100 83 79 61 1618 50 69 71 78 840 208 394 410 0 0 0 0 0 0 0 0 c 0 432 382 215 95 70 38 26 41 50 23 68 33 231 117 379 219 0 0 0 0 0 0 0 0 g 0 465 1338 1092 2225 94 2331 75 757 70 2376 82 2340 137 1970 351 1513 0 0 0 0 0 0 0 0 t 0 1178 414 1031 76 2249 48 2334 80 2326 28 2275 45 1288 201 1372 354 0 0 0 0 0 0 0 0

positions_6nt_m1_rc_shift1 (positions_6nt_m1_rc)
; positions_7nt_m3 versus positions_6nt_m1_rc; m=26/33; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.563148; -tgyGTGTGyGTGTgt--------- ; cor=; Ncor= a 0 601 605 225 67 97 116 76 116 173 108 91 120 116 572 350 0 0 0 0 0 0 0 0 0 c 0 858 565 2345 89 179 54 193 61 2125 74 121 63 179 284 560 0 0 0 0 0 0 0 0 0 g 0 601 2074 237 3576 91 3556 25 3555 73 3551 54 3524 54 2532 435 0 0 0 0 0 0 0 0 0 t 0 1745 561 998 73 3438 79 3511 73 1434 72 3539 98 3456 417 2460 0 0 0 0 0 0 0 0 0

dyads_m7_rc_shift10 (dyads_m7_rc)
; positions_7nt_m3 versus dyads_m7_rc; m=27/33; ncol2=15; w=0; offset=9; strand=R; shift=10; score=0.562944; ----------gtGyGTGTGTGTktg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 517 558 135 252 91 114 108 66 93 41 140 90 360 465 523 c 0 0 0 0 0 0 0 0 0 0 435 757 151 2268 81 139 38 113 52 94 64 100 139 495 453 g 0 0 0 0 0 0 0 0 0 0 2402 446 3437 176 3585 79 3616 30 3629 51 3543 97 1297 728 2128 t 0 0 0 0 0 0 0 0 0 0 496 2089 127 1154 93 3518 88 3641 76 3664 103 3563 2054 2162 746

oligos_7nt_mkv5_m4_rc_shift10 (oligos_7nt_mkv5_m4_rc)
; positions_7nt_m3 versus oligos_7nt_mkv5_m4_rc; m=28/33; ncol2=13; w=0; offset=9; strand=R; shift=10; score=0.521049; ----------gtGTGTgTGTGtg-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1279 913 50 29 50 48 740 84 53 42 83 726 1242 0 0 c 0 0 0 0 0 0 0 0 0 0 1022 1381 57 101 17 96 257 67 42 67 47 1558 663 0 0 g 0 0 0 0 0 0 0 0 0 0 5541 804 8808 48 8906 99 5812 265 8848 44 8776 794 5506 0 0 t 0 0 0 0 0 0 0 0 0 0 1185 5929 112 8849 54 8784 2218 8611 84 8874 121 5949 1616 0 0

oligos_7nt_mkv5_m5_rc_shift7 (oligos_7nt_mkv5_m5_rc)
; positions_7nt_m3 versus oligos_7nt_mkv5_m5_rc; m=29/33; ncol2=14; w=0; offset=6; strand=R; shift=7; score=0.495603; -------tgkGTGTGCGTGtg---- ; cor=; Ncor= a 0 0 0 0 0 0 0 501 418 166 38 69 62 55 56 82 45 114 206 388 389 0 0 0 0 c 0 0 0 0 0 0 0 545 526 155 67 60 21 64 40 2153 48 87 123 595 280 0 0 0 0 g 0 0 0 0 0 0 0 628 1283 1562 2700 70 2733 45 2718 96 2713 95 2317 359 1722 0 0 0 0 t 0 0 0 0 0 0 0 1177 624 968 46 2652 35 2687 37 520 45 2555 205 1509 460 0 0 0 0

dyads_m9_rc_shift11 (dyads_m9_rc)
; positions_7nt_m3 versus dyads_m9_rc; m=30/33; ncol2=14; w=0; offset=10; strand=R; shift=11; score=0.493181; -----------tgkGTGTGTGTTtg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 431 373 145 79 87 64 61 91 50 108 86 176 374 356 c 0 0 0 0 0 0 0 0 0 0 0 441 464 152 70 30 32 47 48 57 43 67 63 345 367 g 0 0 0 0 0 0 0 0 0 0 0 555 1329 1505 2482 99 2538 87 2487 56 2450 94 478 637 1305 t 0 0 0 0 0 0 0 0 0 0 0 1266 527 891 62 2477 59 2498 67 2530 92 2446 1976 1337 665

dyads_m4_rc_shift12 (dyads_m4_rc)
; positions_7nt_m3 versus dyads_m4_rc; m=31/33; ncol2=13; w=0; offset=11; strand=R; shift=12; score=0.492329; ------------GtGyGTGTGTktg ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 355 343 33 99 27 36 31 12 42 33 142 267 369 c 0 0 0 0 0 0 0 0 0 0 0 0 304 608 51 2134 21 45 18 53 25 60 68 403 346 g 0 0 0 0 0 0 0 0 0 0 0 0 2240 251 3147 50 3190 33 3160 14 3156 52 1096 667 1862 t 0 0 0 0 0 0 0 0 0 0 0 0 370 2067 38 986 31 3155 60 3190 46 3124 1963 1932 692

dyads_m6_rc_shift4 (dyads_m6_rc)
; positions_7nt_m3 versus dyads_m6_rc; m=32/33; ncol2=13; w=0; offset=3; strand=R; shift=4; score=0.48145; ----gtrTGTGTGTktg-------- ; cor=; Ncor= a 0 0 0 0 355 344 1805 52 47 18 44 9 38 44 144 270 345 0 0 0 0 0 0 0 0 c 0 0 0 0 351 415 98 30 24 19 21 30 15 33 48 362 346 0 0 0 0 0 0 0 0 g 0 0 0 0 1939 432 987 41 2937 28 2942 17 2945 41 936 619 1706 0 0 0 0 0 0 0 0 t 0 0 0 0 393 1847 148 2915 30 2973 31 2982 40 2920 1910 1787 641 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m9_rc_shift4 (oligos_7nt_mkv5_m9_rc)
; positions_7nt_m3 versus oligos_7nt_mkv5_m9_rc; m=33/33; ncol2=13; w=0; offset=3; strand=R; shift=4; score=0.42551; ----ktTTGTGTsTGtg-------- ; cor=; Ncor= a 0 0 0 0 270 323 42 35 26 13 49 15 96 71 140 218 284 0 0 0 0 0 0 0 0 c 0 0 0 0 324 334 71 49 57 39 68 34 1213 111 183 389 315 0 0 0 0 0 0 0 0 g 0 0 0 0 796 432 298 36 1761 23 1715 44 472 176 1425 301 845 0 0 0 0 0 0 0 0 t 0 0 0 0 494 795 1473 1764 40 1809 52 1791 103 1526 136 976 440 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m1_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m1_shift1 (dyads_m1)
; dyads_m1; m=0 (reference); ncol1=24; shift=1; ncol=25; -cacACACACACACACACACACaCa ; Alignment reference a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002

dyads_m1_shift1 (dyads_m1)
; dyads_m1 versus dyads_m1; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002

positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)
; dyads_m1 versus positions_7nt_m3_rc; m=2/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.995833; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888

positions_7nt_m1_shift1 (positions_7nt_m1)
; dyads_m1 versus positions_7nt_m1; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.994944; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835

positions_7nt_m7_shift1 (positions_7nt_m7)
; dyads_m1 versus positions_7nt_m7; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.993344; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231

positions_6nt_m7_shift1 (positions_6nt_m7)
; dyads_m1 versus positions_6nt_m7; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.992266; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062

positions_7nt_m4_shift1 (positions_7nt_m4)
; dyads_m1 versus positions_7nt_m4; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.992017; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233

positions_7nt_m2_shift1 (positions_7nt_m2)
; dyads_m1 versus positions_7nt_m2; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991564; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894

positions_7nt_m9_shift1 (positions_7nt_m9)
; dyads_m1 versus positions_7nt_m9; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990714; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216

dyads_m8_shift1 (dyads_m8)
; dyads_m1 versus dyads_m8; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990272; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988

positions_6nt_m2_shift1 (positions_6nt_m2)
; dyads_m1 versus positions_6nt_m2; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989545; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111

positions_6nt_m10_shift1 (positions_6nt_m10)
; dyads_m1 versus positions_6nt_m10; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.980697; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785

positions_6nt_m8_shift1 (positions_6nt_m8)
; dyads_m1 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.948907; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0

positions_7nt_m5_shift0 (positions_7nt_m5)
; dyads_m1 versus positions_7nt_m5; m=13/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.915426; acaCACACACACACACACACACac- ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 0 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 0 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 0 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250 0

positions_6nt_m6_shift0 (positions_6nt_m6)
; dyads_m1 versus positions_6nt_m6; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.912035; acamACACACACACACACACACac- ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 0 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 0 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 0 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141 0

positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)
; dyads_m1 versus positions_6nt_m5_rc; m=15/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.911728; acaCACACACACACACACACACac- ; cor=; Ncor= a 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 0 c 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 0 g 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 0 t 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346 0

positions_7nt_m10_shift0 (positions_7nt_m10)
; dyads_m1 versus positions_7nt_m10; m=16/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.911607; acACACACACACACACACACACaC- ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 0 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 0 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 0 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221 0

positions_7nt_m6_shift0 (positions_7nt_m6)
; dyads_m1 versus positions_7nt_m6; m=17/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910576; acaCACACACACACACACACACac- ; cor=; Ncor= a 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 0 c 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 0 g 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 0 t 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314 0

positions_7nt_m8_shift0 (positions_7nt_m8)
; dyads_m1 versus positions_7nt_m8; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910501; acACACACACACACACACACACac- ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 0 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 0 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 0 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444 0

positions_6nt_m4_shift0 (positions_6nt_m4)
; dyads_m1 versus positions_6nt_m4; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.909086; acrCACACACACACACACACACac- ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 0 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 0 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 0 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762 0

positions_6nt_m9_shift0 (positions_6nt_m9)
; dyads_m1 versus positions_6nt_m9; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.904482; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0

positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)
; dyads_m1 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.861749; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0

dyads_m10_shift6 (dyads_m10)
; dyads_m1 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=5; strand=D; shift=6; score=0.737525; ------ACACACACACACACrCAC- ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0

oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)
; dyads_m1 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=7; strand=D; shift=8; score=0.657608; --------ACACACACACACACAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0

oligos_6nt_mkv4_m5_rc_shift2 (oligos_6nt_mkv4_m5_rc)
; dyads_m1 versus oligos_6nt_mkv4_m5_rc; m=24/33; ncol2=16; w=0; offset=1; strand=R; shift=2; score=0.603566; --acAsACACrCACAsac------- ; cor=; Ncor= a 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 0 0 0 0 0 c 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 0 0 0 0 0 g 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 0 0 0 0 0 t 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0 0 0 0 0 0

oligos_6nt_mkv4_m2_shift9 (oligos_6nt_mkv4_m2)
; dyads_m1 versus oligos_6nt_mkv4_m2; m=25/33; ncol2=16; w=0; offset=8; strand=D; shift=9; score=0.600148; ---------caCwCACAyACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 c 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 g 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 t 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421

positions_6nt_m1_shift10 (positions_6nt_m1)
; dyads_m1 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=9; strand=D; shift=10; score=0.574286; ----------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601

dyads_m7_shift1 (dyads_m7)
; dyads_m1 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.563533; -camACACACACrCac--------- ; cor=; Ncor= a 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 0 0 c 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 0 0 g 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 0 0 t 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m4_shift9 (oligos_7nt_mkv5_m4)
; dyads_m1 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=8; strand=D; shift=9; score=0.52454; ---------caCACAcACACac--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 0 c 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 0 g 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 0 t 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0 0

oligos_7nt_mkv5_m5_shift11 (oligos_7nt_mkv5_m5)
; dyads_m1 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=10; strand=D; shift=11; score=0.497652; -----------caCACGCACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 c 0 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 g 0 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 t 0 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501

dyads_m9_shift1 (dyads_m9)
; dyads_m1 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.49394; -caAACACACACmca---------- ; cor=; Ncor= a 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 0 0 0 c 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 0 0 0 g 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 0 0 0 t 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0 0 0 0

dyads_m4_shift1 (dyads_m4)
; dyads_m1 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.491653; -camACACACrCaC----------- ; cor=; Ncor= a 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 0 0 0 c 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 0 0 0 g 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 0 0 0 t 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0 0 0 0

dyads_m6_shift1 (dyads_m6)
; dyads_m1 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.475484; -camACACACAyac----------- ; cor=; Ncor= a 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 0 0 0 c 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 0 0 0 g 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 0 0 0 t 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)
; dyads_m1 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.423886; -----------caCAsACACAAam- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0

One-to-n matrix alignment; reference matrix: positions_7nt_m10_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m10_shift1 (positions_7nt_m10)
; positions_7nt_m10; m=0 (reference); ncol1=24; shift=1; ncol=25; -acACACACACACACACACACACaC ; Alignment reference a 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 c 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 g 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 t 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221

positions_7nt_m10_shift1 (positions_7nt_m10)
; positions_7nt_m10 versus positions_7nt_m10; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -acACACACACACACACACACACaC ; cor=; Ncor= a 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 c 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 g 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 t 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221

positions_7nt_m6_shift1 (positions_7nt_m6)
; positions_7nt_m10 versus positions_7nt_m6; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.997722; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 c 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 g 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 t 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314

positions_6nt_m6_shift1 (positions_6nt_m6)
; positions_7nt_m10 versus positions_6nt_m6; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991812; -acamACACACACACACACACACac ; cor=; Ncor= a 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141

positions_7nt_m5_shift1 (positions_7nt_m5)
; positions_7nt_m10 versus positions_7nt_m5; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.99087; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250

positions_6nt_m5_rc_shift1 (positions_6nt_m5_rc)
; positions_7nt_m10 versus positions_6nt_m5_rc; m=5/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.990757; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 c 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 g 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 t 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346

positions_7nt_m8_shift1 (positions_7nt_m8)
; positions_7nt_m10 versus positions_7nt_m8; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987749; -acACACACACACACACACACACac ; cor=; Ncor= a 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444

positions_6nt_m4_shift1 (positions_6nt_m4)
; positions_7nt_m10 versus positions_6nt_m4; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.985863; -acrCACACACACACACACACACac ; cor=; Ncor= a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762

positions_6nt_m9_shift1 (positions_6nt_m9)
; positions_7nt_m10 versus positions_6nt_m9; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.981208; -acaCacACACACACACACACACac ; cor=; Ncor= a 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244

positions_6nt_m8_shift2 (positions_6nt_m8)
; positions_7nt_m10 versus positions_6nt_m8; m=9/33; ncol2=23; w=0; offset=1; strand=D; shift=2; score=0.946684; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027

positions_6nt_m3_rc_shift1 (positions_6nt_m3_rc)
; positions_7nt_m10 versus positions_6nt_m3_rc; m=10/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.926163; -mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706

positions_7nt_m7_shift2 (positions_7nt_m7)
; positions_7nt_m10 versus positions_7nt_m7; m=11/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.912104; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313

dyads_m1_shift2 (dyads_m1)
; positions_7nt_m10 versus dyads_m1; m=12/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.911607; --cacACACACACACACACACACaC ; cor=; Ncor= a 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034

positions_7nt_m9_shift2 (positions_7nt_m9)
; positions_7nt_m10 versus positions_7nt_m9; m=13/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.91106; --caCACACACACACACACACACAC ; cor=; Ncor= a 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 c 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 g 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 t 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316

positions_7nt_m4_shift2 (positions_7nt_m4)
; positions_7nt_m10 versus positions_7nt_m4; m=14/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910278; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297

dyads_m8_shift2 (dyads_m8)
; positions_7nt_m10 versus dyads_m8; m=15/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910211; --CaCACACACACACACACACACrC ; cor=; Ncor= a 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049

positions_7nt_m3_rc_shift2 (positions_7nt_m3_rc)
; positions_7nt_m10 versus positions_7nt_m3_rc; m=16/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.908799; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 c 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 g 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 t 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963

positions_6nt_m7_shift0 (positions_6nt_m7)
; positions_7nt_m10 versus positions_6nt_m7; m=17/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908797; caCaCACACACACACACACACACa- ; cor=; Ncor= a 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 0 c 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 0 g 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 0 t 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062 0

positions_6nt_m10_shift0 (positions_6nt_m10)
; positions_7nt_m10 versus positions_6nt_m10; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908654; cacamACACACACACACACACACa- ; cor=; Ncor= a 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 0 c 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 0 g 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 0 t 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785 0

positions_7nt_m2_shift2 (positions_7nt_m2)
; positions_7nt_m10 versus positions_7nt_m2; m=19/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.908486; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 c 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 g 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 t 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970

positions_7nt_m1_shift2 (positions_7nt_m1)
; positions_7nt_m10 versus positions_7nt_m1; m=20/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.908302; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 c 0 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 g 0 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 t 0 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882

positions_6nt_m2_shift2 (positions_6nt_m2)
; positions_7nt_m10 versus positions_6nt_m2; m=21/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.906762; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256

dyads_m10_shift5 (dyads_m10)
; positions_7nt_m10 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=4; strand=D; shift=5; score=0.741032; -----ACACACACACACACrCAC-- ; cor=; Ncor= a 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 0 c 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 0 g 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 0 t 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0 0

oligos_7nt_mkv5_m8_shift5 (oligos_7nt_mkv5_m8)
; positions_7nt_m10 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=4; strand=D; shift=5; score=0.660292; -----ACACACACACACACAC---- ; cor=; Ncor= a 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 0 0 c 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 0 0 g 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 0 0 t 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0 0 0

oligos_6nt_mkv4_m2_shift4 (oligos_6nt_mkv4_m2)
; positions_7nt_m10 versus oligos_6nt_mkv4_m2; m=24/33; ncol2=16; w=0; offset=3; strand=D; shift=4; score=0.604103; ----caCwCACAyACACmca----- ; cor=; Ncor= a 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 0 0 0 0 c 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 0 0 0 0 g 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 0 0 0 0 t 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0 0 0 0 0

oligos_6nt_mkv4_m5_rc_shift9 (oligos_6nt_mkv4_m5_rc)
; positions_7nt_m10 versus oligos_6nt_mkv4_m5_rc; m=25/33; ncol2=16; w=0; offset=8; strand=R; shift=9; score=0.596522; ---------acAsACACrCACAsac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 c 0 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 g 0 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 t 0 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214

dyads_m7_shift8 (dyads_m7)
; positions_7nt_m10 versus dyads_m7; m=26/33; ncol2=15; w=0; offset=7; strand=D; shift=8; score=0.565589; --------camACACACACrCac-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 c 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 g 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 t 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0

positions_6nt_m1_shift7 (positions_6nt_m1)
; positions_7nt_m10 versus positions_6nt_m1; m=27/33; ncol2=15; w=0; offset=6; strand=D; shift=7; score=0.56547; -------acACACrCACACrca--- ; cor=; Ncor= a 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 0 0 c 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 0 0 g 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 0 0 t 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0 0 0

oligos_7nt_mkv5_m4_shift6 (oligos_7nt_mkv5_m4)
; positions_7nt_m10 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=5; strand=D; shift=6; score=0.524231; ------caCACAcACACac------ ; cor=; Ncor= a 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 0 0 0 0 c 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 0 0 0 0 g 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 0 0 0 0 t 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0 0 0 0 0

dyads_m4_shift10 (dyads_m4)
; positions_7nt_m10 versus dyads_m4; m=29/33; ncol2=13; w=0; offset=9; strand=D; shift=10; score=0.487222; ----------camACACACrCaC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 c 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 g 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 t 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0

dyads_m9_shift2 (dyads_m9)
; positions_7nt_m10 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=1; strand=D; shift=2; score=0.486302; --caAACACACACmca--------- ; cor=; Ncor= a 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 0 0 c 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 0 0 g 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 0 0 t 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m5_shift8 (oligos_7nt_mkv5_m5)
; positions_7nt_m10 versus oligos_7nt_mkv5_m5; m=31/33; ncol2=14; w=0; offset=7; strand=D; shift=8; score=0.483291; --------caCACGCACACmca--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 c 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 g 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 t 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0

dyads_m6_shift2 (dyads_m6)
; positions_7nt_m10 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.482925; --camACACACAyac---------- ; cor=; Ncor= a 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 0 0 c 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 0 0 g 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 0 0 t 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m9_shift8 (oligos_7nt_mkv5_m9)
; positions_7nt_m10 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=7; strand=D; shift=8; score=0.423493; --------caCAsACACAAam---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 0 0 c 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 0 0 g 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 0 0 t 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_6nt_m1_shift9 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m1_shift9 (positions_6nt_m1)
; positions_6nt_m1; m=0 (reference); ncol1=15; shift=9; ncol=24; ---------acACACrCACACrca ; Alignment reference a 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601

positions_6nt_m1_shift9 (positions_6nt_m1)
; positions_6nt_m1 versus positions_6nt_m1; m=1/33; ncol2=15; w=0; offset=0; strand=D; shift=9; score= 1; ---------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601

oligos_7nt_mkv5_m5_shift10 (oligos_7nt_mkv5_m5)
; positions_6nt_m1 versus oligos_7nt_mkv5_m5; m=2/33; ncol2=14; w=0; offset=1; strand=D; shift=10; score=0.866036; ----------caCACGCACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 c 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 g 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 t 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501

oligos_7nt_mkv5_m8_shift9 (oligos_7nt_mkv5_m8)
; positions_6nt_m1 versus oligos_7nt_mkv5_m8; m=3/33; ncol2=16; w=0; offset=0; strand=D; shift=9; score=0.838054; ---------ACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 c 0 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 g 0 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 t 0 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929

oligos_7nt_mkv5_m4_shift10 (oligos_7nt_mkv5_m4)
; positions_6nt_m1 versus oligos_7nt_mkv5_m4; m=4/33; ncol2=13; w=0; offset=1; strand=D; shift=10; score=0.781268; ----------caCACAcACACac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 c 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 g 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 t 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0

oligos_6nt_mkv4_m2_shift8 (oligos_6nt_mkv4_m2)
; positions_6nt_m1 versus oligos_6nt_mkv4_m2; m=5/33; ncol2=16; w=-1; offset=-1; strand=D; shift=8; score=0.779902; --------caCwCACAyACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 c 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 g 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 t 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421

dyads_m10_shift7 (dyads_m10)
; positions_6nt_m1 versus dyads_m10; m=6/33; ncol2=18; w=-2; offset=-2; strand=D; shift=7; score=0.769973; -------ACACACACACACACrCA ; cor=; Ncor= a 0 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 c 0 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 g 0 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 t 0 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902

dyads_m7_shift10 (dyads_m7)
; positions_6nt_m1 versus dyads_m7; m=7/33; ncol2=15; w=0; offset=1; strand=D; shift=10; score=0.764421; ----------camACACACACrCa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 c 0 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 g 0 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 t 0 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558

oligos_6nt_mkv4_m5_rc_shift7 (oligos_6nt_mkv4_m5_rc)
; positions_6nt_m1 versus oligos_6nt_mkv4_m5_rc; m=8/33; ncol2=16; w=-2; offset=-2; strand=R; shift=7; score=0.760388; -------acAsACACrCACAsac- ; cor=; Ncor= a 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 c 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 g 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 t 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0

dyads_m9_shift10 (dyads_m9)
; positions_6nt_m1 versus dyads_m9; m=9/33; ncol2=14; w=0; offset=1; strand=D; shift=10; score=0.736034; ----------caAACACACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 c 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 g 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 t 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431

dyads_m4_shift10 (dyads_m4)
; positions_6nt_m1 versus dyads_m4; m=10/33; ncol2=13; w=0; offset=1; strand=D; shift=10; score=0.684058; ----------camACACACrCaC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 c 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 g 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 t 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0

dyads_m6_shift10 (dyads_m6)
; positions_6nt_m1 versus dyads_m6; m=11/33; ncol2=13; w=0; offset=1; strand=D; shift=10; score= 0.6762; ----------camACACACAyac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 c 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 g 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 t 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0

oligos_7nt_mkv5_m9_shift10 (oligos_7nt_mkv5_m9)
; positions_6nt_m1 versus oligos_7nt_mkv5_m9; m=12/33; ncol2=13; w=0; offset=1; strand=D; shift=10; score=0.612525; ----------caCAsACACAAam- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 c 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 g 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 t 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0

positions_6nt_m8_shift2 (positions_6nt_m8)
; positions_6nt_m1 versus positions_6nt_m8; m=13/33; ncol2=23; w=-7; offset=-7; strand=D; shift=2; score=0.609057; --caCACACACACACACACACACa ; cor=; Ncor= a 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 c 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 g 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 t 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903

positions_6nt_m9_shift1 (positions_6nt_m9)
; positions_6nt_m1 versus positions_6nt_m9; m=14/33; ncol2=24; w=-8; offset=-8; strand=D; shift=1; score=0.584313; -acaCacACACACACACACACACa ; cor=; Ncor= a 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 c 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 g 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 t 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142

dyads_m8_shift0 (dyads_m8)
; positions_6nt_m1 versus dyads_m8; m=15/33; ncol2=24; w=-9; offset=-9; strand=D; shift=0; score=0.576769; CaCACACACACACACACACACrCa ; cor=; Ncor= a 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988

dyads_m1_shift0 (dyads_m1)
; positions_6nt_m1 versus dyads_m1; m=16/33; ncol2=24; w=-9; offset=-9; strand=D; shift=0; score=0.574286; cacACACACACACACACACACaCa ; cor=; Ncor= a 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002

positions_6nt_m3_rc_shift3 (positions_6nt_m3_rc)
; positions_6nt_m1 versus positions_6nt_m3_rc; m=17/33; ncol2=24; w=-6; offset=-6; strand=R; shift=3; score=0.571575; ---mmmmmmaCACACrCACACACa ; cor=; Ncor= a 0 0 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 c 0 0 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 g 0 0 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 t 0 0 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902

positions_7nt_m7_shift0 (positions_7nt_m7)
; positions_6nt_m1 versus positions_7nt_m7; m=18/33; ncol2=24; w=-9; offset=-9; strand=D; shift=0; score=0.571444; caCACACACACACACACACACaca ; cor=; Ncor= a 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231

positions_7nt_m4_shift0 (positions_7nt_m4)
; positions_6nt_m1 versus positions_7nt_m4; m=19/33; ncol2=24; w=-9; offset=-9; strand=D; shift=0; score=0.571436; caCACACACACACACACACACaca ; cor=; Ncor= a 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233

positions_7nt_m6_shift3 (positions_7nt_m6)
; positions_6nt_m1 versus positions_7nt_m6; m=20/33; ncol2=24; w=-6; offset=-6; strand=D; shift=3; score=0.56705; ---acaCACACACACACACACACA ; cor=; Ncor= a 0 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 c 0 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 g 0 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 t 0 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508

positions_7nt_m9_shift4 (positions_7nt_m9)
; positions_6nt_m1 versus positions_7nt_m9; m=21/33; ncol2=24; w=-5; offset=-5; strand=D; shift=4; score=0.566387; ----caCACACACACACACACACA ; cor=; Ncor= a 0 0 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 c 0 0 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 g 0 0 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 t 0 0 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406

positions_7nt_m2_shift4 (positions_7nt_m2)
; positions_6nt_m1 versus positions_7nt_m2; m=22/33; ncol2=24; w=-5; offset=-5; strand=D; shift=4; score=0.565945; ----cacACACACACACACACACA ; cor=; Ncor= a 0 0 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 c 0 0 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 g 0 0 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 t 0 0 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248

positions_7nt_m10_shift3 (positions_7nt_m10)
; positions_6nt_m1 versus positions_7nt_m10; m=23/33; ncol2=24; w=-6; offset=-6; strand=D; shift=3; score=0.56547; ---acACACACACACACACACACA ; cor=; Ncor= a 0 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 c 0 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 g 0 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 t 0 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405

positions_6nt_m2_shift0 (positions_6nt_m2)
; positions_6nt_m1 versus positions_6nt_m2; m=24/33; ncol2=24; w=-9; offset=-9; strand=D; shift=0; score=0.565244; caCACACACACACACACACACaca ; cor=; Ncor= a 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111

positions_7nt_m1_shift0 (positions_7nt_m1)
; positions_6nt_m1 versus positions_7nt_m1; m=25/33; ncol2=24; w=-9; offset=-9; strand=D; shift=0; score=0.564913; cacACACACACACACACACACACa ; cor=; Ncor= a 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835

positions_7nt_m5_shift5 (positions_7nt_m5)
; positions_6nt_m1 versus positions_7nt_m5; m=26/33; ncol2=24; w=-4; offset=-4; strand=D; shift=5; score=0.564864; -----acaCACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 c 0 0 0 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 g 0 0 0 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 t 0 0 0 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287

positions_7nt_m8_shift3 (positions_7nt_m8)
; positions_6nt_m1 versus positions_7nt_m8; m=27/33; ncol2=24; w=-6; offset=-6; strand=D; shift=3; score=0.564508; ---acACACACACACACACACACA ; cor=; Ncor= a 0 0 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 c 0 0 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 g 0 0 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 t 0 0 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535

positions_6nt_m7_shift6 (positions_6nt_m7)
; positions_6nt_m1 versus positions_6nt_m7; m=28/33; ncol2=24; w=-3; offset=-3; strand=D; shift=6; score=0.563192; ------caCaCACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 c 0 0 0 0 0 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 g 0 0 0 0 0 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 t 0 0 0 0 0 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213

positions_7nt_m3_rc_shift0 (positions_7nt_m3_rc)
; positions_6nt_m1 versus positions_7nt_m3_rc; m=29/33; ncol2=24; w=-9; offset=-9; strand=R; shift=0; score=0.563148; cacACACACACACACACACACACa ; cor=; Ncor= a 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888

positions_6nt_m5_rc_shift5 (positions_6nt_m5_rc)
; positions_6nt_m1 versus positions_6nt_m5_rc; m=30/33; ncol2=24; w=-4; offset=-4; strand=R; shift=5; score=0.562444; -----acaCACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 c 0 0 0 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 g 0 0 0 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 t 0 0 0 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289

positions_6nt_m4_shift1 (positions_6nt_m4)
; positions_6nt_m1 versus positions_6nt_m4; m=31/33; ncol2=24; w=-8; offset=-8; strand=D; shift=1; score=0.560786; -acrCACACACACACACACACACa ; cor=; Ncor= a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646

positions_6nt_m10_shift0 (positions_6nt_m10)
; positions_6nt_m1 versus positions_6nt_m10; m=32/33; ncol2=24; w=-9; offset=-9; strand=D; shift=0; score=0.557954; cacamACACACACACACACACACa ; cor=; Ncor= a 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785

positions_6nt_m6_shift1 (positions_6nt_m6)
; positions_6nt_m1 versus positions_6nt_m6; m=33/33; ncol2=24; w=-8; offset=-8; strand=D; shift=1; score=0.556616; -acamACACACACACACACACACa ; cor=; Ncor= a 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 c 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 g 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 t 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950

One-to-n matrix alignment; reference matrix: positions_6nt_m3_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m3_shift1 (positions_6nt_m3)
; positions_6nt_m3; m=0 (reference); ncol1=24; shift=1; ncol=25; -gtGtGTGTGTGyGTGTGtkkkkkk ; Alignment reference a 0 706 680 497 902 143 113 101 66 117 72 126 244 108 119 146 143 227 472 711 663 797 820 1016 1069 c 0 591 913 397 618 94 134 36 175 33 117 58 1474 68 153 60 282 133 842 437 698 669 700 902 953 g 0 3680 646 4351 350 5253 63 5414 32 5399 30 5324 123 5316 75 5255 126 4915 1228 2606 1991 2070 2228 2242 1569 t 0 625 3363 357 3732 112 5292 51 5329 53 5383 94 3761 110 5255 141 5051 327 3060 1848 2250 2066 1854 1442 2011

positions_6nt_m3_shift1 (positions_6nt_m3)
; positions_6nt_m3 versus positions_6nt_m3; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -gtGtGTGTGTGyGTGTGtkkkkkk ; cor=; Ncor= a 0 706 680 497 902 143 113 101 66 117 72 126 244 108 119 146 143 227 472 711 663 797 820 1016 1069 c 0 591 913 397 618 94 134 36 175 33 117 58 1474 68 153 60 282 133 842 437 698 669 700 902 953 g 0 3680 646 4351 350 5253 63 5414 32 5399 30 5324 123 5316 75 5255 126 4915 1228 2606 1991 2070 2228 2242 1569 t 0 625 3363 357 3732 112 5292 51 5329 53 5383 94 3761 110 5255 141 5051 327 3060 1848 2250 2066 1854 1442 2011

positions_6nt_m9_rc_shift1 (positions_6nt_m9_rc)
; positions_6nt_m3 versus positions_6nt_m9_rc; m=2/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.959767; -gtGTGTGTGTGTGTGTGTgtGtgt ; cor=; Ncor= a 0 1244 1142 820 1256 194 189 204 139 193 331 227 127 141 140 223 178 300 631 932 869 895 1035 1390 1328 c 0 1023 1499 660 1051 129 337 54 217 60 1952 105 195 49 300 61 256 151 1076 540 1014 718 1117 953 1480 g 0 6677 1066 7825 511 9519 85 9636 49 9623 131 9499 64 9641 71 9522 169 9166 1286 6536 1877 7182 1310 5987 1768 t 0 1014 6251 653 7140 116 9347 64 9553 82 7544 127 9572 127 9447 152 9355 341 6965 1950 6198 1163 6496 1628 5382

positions_7nt_m8_rc_shift1 (positions_7nt_m8_rc)
; positions_6nt_m3 versus positions_7nt_m8_rc; m=3/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.945829; -gtGTGTGTGTGTGTGTGTGTGTgt ; cor=; Ncor= a 0 1444 1222 1288 535 510 246 411 166 389 172 426 358 318 186 312 216 380 313 874 626 973 892 1632 1388 c 0 1459 1853 1524 768 336 457 179 498 140 418 144 1997 165 363 142 547 183 542 484 976 688 1273 1023 1814 g 0 8000 1299 8529 466 11129 175 11460 86 11558 62 11510 203 11550 81 11502 121 11271 382 8585 957 9320 1241 7685 1858 t 0 1326 7855 888 10460 254 11351 179 11479 142 11577 149 9671 196 11599 273 11345 395 10992 2286 9670 1248 8823 1889 7169

positions_6nt_m6_rc_shift1 (positions_6nt_m6_rc)
; positions_6nt_m3 versus positions_6nt_m6_rc; m=4/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.932795; -gtGTGTGTGTGTGTGTGTGTktgt ; cor=; Ncor= a 0 1141 950 717 498 618 395 780 130 292 75 229 101 1501 114 239 123 247 122 347 283 875 740 1210 1094 c 0 1161 1492 605 871 391 690 410 210 131 182 86 192 236 209 102 223 100 302 144 454 438 1147 919 1261 g 0 6364 924 7757 467 8244 354 7685 119 9116 51 9244 98 7597 92 9166 88 9073 157 8796 453 5914 1781 5883 1600 t 0 997 6297 584 7827 410 8224 788 9204 124 9355 104 9272 329 9248 156 9229 243 9082 376 8473 2436 5995 1651 5708

positions_7nt_m10_rc_shift1 (positions_7nt_m10_rc)
; positions_6nt_m3 versus positions_7nt_m10_rc; m=5/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.926163; -GtGTGTGTGTGTGTGTGTGTGTgt ; cor=; Ncor= a 0 1221 1023 527 405 507 468 450 219 349 128 317 146 1478 154 334 249 368 304 438 1091 980 932 1407 1333 c 0 1193 1920 393 861 230 2409 206 485 127 434 115 277 269 305 113 332 115 481 212 1255 509 1290 838 1602 g 0 7628 898 9811 279 10121 280 10266 108 10453 63 10565 121 8961 100 10487 139 10395 213 10095 752 8605 1069 7310 1631 t 0 1077 7278 388 9574 261 7962 197 10307 190 10494 122 10575 411 10560 185 10399 241 10121 374 8021 1025 7828 1564 6553

positions_7nt_m5_rc_shift1 (positions_7nt_m5_rc)
; positions_6nt_m3 versus positions_7nt_m5_rc; m=6/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.919201; -gtGTGTGTGTGTGTGTGTGTGtgt ; cor=; Ncor= a 0 1250 994 561 341 493 287 1613 213 397 172 334 119 291 341 371 214 368 280 461 360 618 826 1388 1191 c 0 1186 1587 433 624 243 588 371 397 146 427 107 288 103 1667 160 370 137 524 163 587 309 1405 770 1482 g 0 7163 872 9224 281 9623 225 8200 138 9935 76 10047 63 10067 195 9846 124 9804 184 9612 358 9032 1361 7006 1519 t 0 1002 7148 383 9355 242 9501 417 9853 123 9926 113 10131 140 8398 224 9893 292 9613 365 9296 642 7009 1437 6409

positions_6nt_m5_shift1 (positions_6nt_m5)
; positions_6nt_m3 versus positions_6nt_m5; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.917302; -gtGTGTGTGTGTGTGTGTGTGtgt ; cor=; Ncor= a 0 1346 1032 551 401 483 289 514 399 451 199 332 158 302 182 1358 236 377 309 443 396 617 1189 1451 1278 c 0 1227 1705 484 910 233 703 215 2098 217 435 134 432 125 324 309 401 164 435 171 606 309 1478 812 1562 g 0 7409 910 9651 267 10093 179 10142 222 10215 79 10428 65 10505 130 8894 160 10240 223 10110 367 9570 1033 7325 1580 t 0 1092 7427 388 9496 265 9903 203 8355 191 10361 180 10419 142 10438 513 10277 293 10107 350 9705 578 7374 1486 6654

positions_7nt_m6_rc_shift1 (positions_7nt_m6_rc)
; positions_6nt_m3 versus positions_7nt_m6_rc; m=8/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.913476; -gtGTGTGTGTGTGTGTGTGTGtgt ; cor=; Ncor= a 0 1314 1108 658 508 613 555 529 276 426 168 364 178 1359 192 368 226 377 261 446 417 657 1186 1422 1250 c 0 1321 2020 523 984 308 2529 270 577 151 527 144 329 263 351 141 309 140 451 175 604 291 1492 809 1571 g 0 7534 1002 9649 365 10096 354 10279 137 10526 78 10687 120 9276 117 10610 121 10549 168 10366 336 9778 1019 7570 1570 t 0 1149 7188 488 9461 301 7880 240 10328 215 10545 123 10691 420 10658 199 10662 252 10438 331 9961 592 7621 1517 6927

positions_6nt_m4_rc_shift1 (positions_6nt_m4_rc)
; positions_6nt_m3 versus positions_6nt_m4_rc; m=9/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.911422; -gtGTGTGTGTGTGTGTGTGTGygt ; cor=; Ncor= a 0 762 646 603 213 196 96 195 83 456 63 157 51 129 66 913 91 152 91 178 111 269 364 834 636 c 0 740 871 744 264 142 188 80 170 205 128 65 125 50 120 154 152 72 194 64 281 117 1750 462 917 g 0 4259 642 4643 168 5939 80 6014 65 5114 66 6086 32 6144 58 5055 64 6040 77 6019 127 5818 425 4330 793 t 0 621 4223 392 5737 105 6018 93 6064 607 6125 74 6174 59 6138 260 6075 118 6020 121 5863 178 3843 756 4036

positions_6nt_m8_rc_shift1 (positions_6nt_m8_rc)
; positions_6nt_m3 versus positions_6nt_m8_rc; m=10/33; ncol2=23; w=0; offset=0; strand=R; shift=1; score=0.908608; -gtGTGTGTGTGTGTGTGTGTGtg- ; cor=; Ncor= a 0 2027 1903 1470 1957 604 497 484 365 524 569 504 339 344 386 416 450 498 1550 1248 1274 1522 1827 2108 0 c 0 1746 2595 1257 1950 373 939 152 663 182 2809 217 484 129 687 144 545 238 1753 614 1626 934 2346 1392 0 g 0 10165 1687 11817 975 14341 246 14838 109 14777 257 14687 93 14960 95 14844 217 14478 861 12569 1235 11540 2041 9716 0 t 0 1738 9491 1132 10794 358 13994 202 14539 193 12041 268 14760 243 14508 272 14464 462 11512 1245 11541 1680 9462 2460 0

positions_6nt_m10_rc_shift0 (positions_6nt_m10_rc)
; positions_6nt_m3 versus positions_6nt_m10_rc; m=11/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.886195; tGTGTGTGTGTGTGTGTGTktgtg- ; cor=; Ncor= a 785 908 478 506 355 625 113 208 49 168 68 1366 81 175 86 169 68 256 193 665 553 860 902 1108 0 c 1260 756 755 375 518 335 164 90 130 66 140 186 142 74 169 69 206 99 346 352 841 678 984 852 0 g 875 5653 483 6829 333 6383 105 7675 40 7756 67 6248 72 7720 78 7668 106 7423 329 4819 1675 4643 1435 4474 0 t 5158 761 6362 368 6872 735 7696 105 7859 88 7803 278 7783 109 7745 172 7698 300 7210 2242 5009 1897 4757 1644 0

positions_7nt_m9_rc_shift0 (positions_7nt_m9_rc)
; positions_6nt_m3 versus positions_7nt_m9_rc; m=12/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.867086; tGTGTGTGTGTGTGTGTGTGTGtg- ; cor=; Ncor= a 1216 1316 715 783 406 1897 235 393 183 379 131 290 372 339 215 319 301 392 352 500 1229 1082 1219 1492 0 c 1899 1199 1124 580 684 490 445 162 446 113 311 114 1786 152 319 121 508 126 546 258 1409 564 1628 933 0 g 1299 7853 718 9602 363 8573 183 10752 97 10823 59 10909 170 10756 82 10771 118 10624 268 10214 830 8663 1385 7348 0 t 7027 1073 8884 476 9988 481 10578 134 10715 126 10940 128 9113 194 10825 230 10514 299 10275 469 7973 1132 7209 1668 0

positions_7nt_m2_rc_shift0 (positions_7nt_m2_rc)
; positions_6nt_m3 versus positions_7nt_m2_rc; m=13/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.865319; tGTGTGTGTGTGTGTGTGTGTgtg- ; cor=; Ncor= a 894 970 487 564 248 1509 149 276 111 260 84 215 249 231 126 208 132 256 144 323 247 782 738 1048 0 c 1394 902 772 424 457 379 335 105 320 82 212 68 1356 100 243 80 342 101 361 164 486 357 1108 759 0 g 947 6171 492 7523 255 6600 130 8357 61 8409 35 8459 116 8362 64 8364 59 8219 166 7949 392 5719 1162 5649 0 t 5592 784 7076 316 7867 339 8213 89 8335 76 8496 85 7106 134 8394 175 8294 251 8156 391 7702 1969 5819 1371 0

positions_6nt_m2_rc_shift0 (positions_6nt_m2_rc)
; positions_6nt_m3 versus positions_6nt_m2_rc; m=14/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.861808; tgtGTGTGTGTGTGTGTGTGTGtg- ; cor=; Ncor= a 1111 1256 1027 1006 336 335 138 322 130 1646 160 286 107 228 68 251 154 683 379 627 540 904 973 1339 0 c 1827 1211 1449 814 422 201 272 128 270 304 255 102 181 87 181 80 260 322 633 409 747 542 1442 900 0 g 1360 6633 1249 7183 313 9532 107 9678 117 7946 85 9760 60 9816 64 9728 189 7492 566 8487 663 7674 1249 6338 0 t 5953 1151 6526 1248 9180 183 9734 123 9734 355 9751 103 9903 120 9938 192 9648 1754 8673 728 8301 1131 6587 1674 0

dyads_m1_rc_shift0 (dyads_m1_rc)
; positions_6nt_m3 versus dyads_m1_rc; m=15/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.861749; tGtGTGTGTGTGTGTGTGTGTgtg- ; cor=; Ncor= a 1002 1034 1501 387 306 291 196 269 114 261 120 236 111 209 270 239 136 254 218 329 304 1781 800 1127 0 c 1428 923 1040 286 452 110 335 103 242 85 347 63 223 70 1314 112 278 109 422 174 550 394 1153 699 0 g 961 6084 540 7832 172 8254 96 8296 47 8335 46 8404 42 8405 134 8271 99 8198 179 7980 362 5772 1069 5685 0 t 5400 750 5710 286 7861 136 8164 123 8388 110 8278 88 8415 107 7073 169 8278 230 7972 308 7575 844 5769 1280 0

positions_6nt_m7_rc_shift0 (positions_6nt_m7_rc)
; positions_6nt_m3 versus positions_6nt_m7_rc; m=16/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.86155; tGTGTGTGTGTGTGTGTGTGtGtg- ; cor=; Ncor= a 1062 1139 443 454 215 420 213 1568 170 308 147 305 157 300 422 371 346 376 454 545 1221 1008 1222 1455 0 c 1569 929 638 266 464 187 432 337 321 122 358 82 271 101 1757 187 466 144 685 240 1326 586 1507 886 0 g 1035 7623 359 9528 164 9726 148 8217 116 9958 72 10013 69 9933 237 9672 182 9649 280 9231 861 7767 1373 6562 0 t 6838 813 9064 256 9661 171 9711 382 9897 116 9927 104 10007 170 8088 274 9510 335 9085 488 7096 1143 6402 1601 0

positions_7nt_m1_rc_shift0 (positions_7nt_m1_rc)
; positions_6nt_m3 versus positions_7nt_m1_rc; m=17/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.860104; tGTGTGTGTGTGTGTGTGTGTgtg- ; cor=; Ncor= a 835 882 469 306 163 307 147 1313 120 219 92 212 76 195 277 258 149 227 185 338 296 741 717 1042 0 c 1236 789 702 195 364 142 336 247 224 102 258 48 194 64 1329 135 291 101 426 146 506 367 1070 699 0 g 847 6045 381 7681 128 7824 115 6542 74 7992 50 8052 33 8024 162 7821 93 7819 142 7519 416 5354 1145 5326 0 t 5474 676 6840 210 7737 119 7794 290 7974 79 7992 80 8089 109 6624 178 7859 245 7639 389 7174 1930 5460 1325 0

positions_7nt_m4_rc_shift0 (positions_7nt_m4_rc)
; positions_6nt_m3 versus positions_7nt_m4_rc; m=18/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.858196; tgtGTGTGTGTGTGTGTGTGTGtg- ; cor=; Ncor= a 1233 1297 1386 528 408 419 221 364 172 386 170 683 161 267 174 310 209 375 511 491 441 579 971 1306 0 c 1807 1159 1410 418 542 189 395 129 367 149 384 285 230 110 350 102 362 160 2101 245 670 306 1594 789 0 g 1221 6838 792 8981 245 9472 132 9630 72 9579 113 8427 133 9771 81 9691 123 9474 394 9162 397 8807 1027 6774 0 t 6019 986 6692 353 9085 200 9532 157 9669 166 9613 885 9756 132 9675 177 9586 271 7274 382 8772 588 6688 1411 0

positions_7nt_m3_shift0 (positions_7nt_m3)
; positions_6nt_m3 versus positions_7nt_m3; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.855442; tGTGTGTGTGTGTGTGTGTGTgtg- ; cor=; Ncor= a 888 963 461 536 226 1564 180 293 127 244 96 220 105 246 267 248 144 260 184 326 294 1779 767 1109 0 c 1351 874 789 386 460 344 358 128 215 77 271 55 232 87 1392 111 276 102 429 167 498 385 1201 700 0 g 905 6174 469 7546 225 6546 139 8227 64 8363 43 8415 47 8319 124 8240 82 8182 167 7963 345 5777 1038 5670 0 t 5629 762 7054 305 7862 319 8096 125 8367 89 8363 83 8389 121 6990 174 8271 229 7993 317 7636 832 5767 1294 0

positions_7nt_m7_rc_shift0 (positions_7nt_m7_rc)
; positions_6nt_m3 versus positions_7nt_m7_rc; m=20/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.855306; tgtGTGTGTGTGTGTGTGTGTGtg- ; cor=; Ncor= a 1231 1313 959 554 331 436 187 401 199 817 182 314 135 304 145 334 203 1521 269 448 449 777 941 1369 0 c 1916 1206 1469 450 568 204 436 152 397 326 293 137 253 101 244 113 357 318 489 227 828 404 1512 847 0 g 1302 7165 1248 9398 253 9946 141 10080 137 8742 120 10208 66 10219 95 10138 164 8324 284 9700 527 8738 1199 7015 0 t 6347 1112 7120 394 9644 210 10032 163 10063 911 10201 137 10342 172 10312 211 10072 633 9754 421 8992 877 7144 1565 0

dyads_m8_rc_shift0 (dyads_m8_rc)
; positions_6nt_m3 versus dyads_m8_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.852709; tGyGTGTGTGTGTGTGTGTGTGtG- ; cor=; Ncor= a 988 1049 644 404 281 324 145 289 144 1269 131 238 112 194 102 230 146 276 353 301 307 396 774 1010 0 c 1578 909 2296 346 518 155 430 135 327 255 292 103 168 59 258 66 279 115 1646 156 524 212 1258 588 0 g 944 5955 537 7677 211 8040 91 8166 96 6905 80 8262 52 8374 44 8298 71 8105 259 7977 263 7630 782 6008 0 t 5206 803 5239 289 7706 197 8050 126 8149 287 8213 113 8384 89 8312 122 8220 220 6458 282 7622 478 5902 1110 0

dyads_m10_rc_shift1 (dyads_m10_rc)
; positions_6nt_m3 versus dyads_m10_rc; m=22/33; ncol2=18; w=0; offset=0; strand=R; shift=1; score=0.734954; -GTGyGTGTGTGTGTGTGT------ ; cor=; Ncor= a 0 1123 902 380 480 221 201 229 125 245 110 261 88 252 141 2074 220 1055 739 0 0 0 0 0 0 c 0 877 1578 284 2725 180 355 87 269 69 179 64 171 86 208 286 342 600 1101 0 0 0 0 0 0 g 0 7303 744 9327 320 9671 113 9764 42 9807 58 9760 75 9753 129 7314 282 7513 1135 0 0 0 0 0 0 t 0 910 6989 222 6688 141 9544 133 9777 92 9866 128 9879 122 9735 539 9369 1045 7238 0 0 0 0 0 0

oligos_7nt_mkv5_m8_rc_shift3 (oligos_7nt_mkv5_m8_rc)
; positions_6nt_m3 versus oligos_7nt_mkv5_m8_rc; m=23/33; ncol2=16; w=0; offset=2; strand=R; shift=3; score=0.652173; ---GTGTGTGTGTGTGTGT------ ; cor=; Ncor= a 0 0 0 1224 929 839 201 176 67 180 73 1978 55 133 73 155 65 855 646 0 0 0 0 0 0 c 0 0 0 1137 1414 1684 216 131 141 98 144 261 127 82 126 68 157 434 1252 0 0 0 0 0 0 g 0 0 0 7805 1031 8182 199 10841 68 10901 61 8641 55 10953 81 10941 72 9006 930 0 0 0 0 0 0 t 0 0 0 1079 7871 540 10629 97 10969 66 10967 365 11008 77 10965 81 10951 950 8417 0 0 0 0 0 0

oligos_6nt_mkv4_m2_rc_shift2 (oligos_6nt_mkv4_m2_rc)
; positions_6nt_m3 versus oligos_6nt_mkv4_m2_rc; m=24/33; ncol2=16; w=0; offset=1; strand=R; shift=2; score=0.591874; --tgkGTGTrTGTGwGtg------- ; cor=; Ncor= a 0 0 421 362 158 100 83 79 61 1618 50 69 71 78 840 208 394 410 0 0 0 0 0 0 0 c 0 0 432 382 215 95 70 38 26 41 50 23 68 33 231 117 379 219 0 0 0 0 0 0 0 g 0 0 465 1338 1092 2225 94 2331 75 757 70 2376 82 2340 137 1970 351 1513 0 0 0 0 0 0 0 t 0 0 1178 414 1031 76 2249 48 2334 80 2326 28 2275 45 1288 201 1372 354 0 0 0 0 0 0 0

oligos_6nt_mkv4_m5_shift5 (oligos_6nt_mkv4_m5)
; positions_6nt_m3 versus oligos_6nt_mkv4_m5; m=25/33; ncol2=16; w=0; offset=4; strand=D; shift=5; score=0.591733; -----gtsTGTGyGTGTsTgt---- ; cor=; Ncor= a 0 0 0 0 0 214 180 62 30 40 21 22 21 20 16 41 12 98 13 202 129 0 0 0 0 c 0 0 0 0 0 294 260 792 62 50 39 43 1077 48 32 62 38 611 57 217 297 0 0 0 0 g 0 0 0 0 0 895 280 760 38 1580 14 1604 24 1593 23 1556 28 898 67 1041 211 0 0 0 0 t 0 0 0 0 0 294 977 83 1567 27 1623 28 575 36 1626 38 1619 90 1560 237 1060 0 0 0 0

positions_6nt_m1_rc_shift4 (positions_6nt_m1_rc)
; positions_6nt_m3 versus positions_6nt_m1_rc; m=26/33; ncol2=15; w=0; offset=3; strand=R; shift=4; score=0.571575; ----tgyGTGTGyGTGTgt------ ; cor=; Ncor= a 0 0 0 0 601 605 225 67 97 116 76 116 173 108 91 120 116 572 350 0 0 0 0 0 0 c 0 0 0 0 858 565 2345 89 179 54 193 61 2125 74 121 63 179 284 560 0 0 0 0 0 0 g 0 0 0 0 601 2074 237 3576 91 3556 25 3555 73 3551 54 3524 54 2532 435 0 0 0 0 0 0 t 0 0 0 0 1745 561 998 73 3438 79 3511 73 1434 72 3539 98 3456 417 2460 0 0 0 0 0 0

dyads_m7_rc_shift1 (dyads_m7_rc)
; positions_6nt_m3 versus dyads_m7_rc; m=27/33; ncol2=15; w=0; offset=0; strand=R; shift=1; score=0.559038; -gtGyGTGTGTGTktg--------- ; cor=; Ncor= a 0 517 558 135 252 91 114 108 66 93 41 140 90 360 465 523 0 0 0 0 0 0 0 0 0 c 0 435 757 151 2268 81 139 38 113 52 94 64 100 139 495 453 0 0 0 0 0 0 0 0 0 g 0 2402 446 3437 176 3585 79 3616 30 3629 51 3543 97 1297 728 2128 0 0 0 0 0 0 0 0 0 t 0 496 2089 127 1154 93 3518 88 3641 76 3664 103 3563 2054 2162 746 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m4_rc_shift1 (oligos_7nt_mkv5_m4_rc)
; positions_6nt_m3 versus oligos_7nt_mkv5_m4_rc; m=28/33; ncol2=13; w=0; offset=0; strand=R; shift=1; score=0.519472; -gtGTGTgTGTGtg----------- ; cor=; Ncor= a 0 1279 913 50 29 50 48 740 84 53 42 83 726 1242 0 0 0 0 0 0 0 0 0 0 0 c 0 1022 1381 57 101 17 96 257 67 42 67 47 1558 663 0 0 0 0 0 0 0 0 0 0 0 g 0 5541 804 8808 48 8906 99 5812 265 8848 44 8776 794 5506 0 0 0 0 0 0 0 0 0 0 0 t 0 1185 5929 112 8849 54 8784 2218 8611 84 8874 121 5949 1616 0 0 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m5_rc_shift4 (oligos_7nt_mkv5_m5_rc)
; positions_6nt_m3 versus oligos_7nt_mkv5_m5_rc; m=29/33; ncol2=14; w=0; offset=3; strand=R; shift=4; score=0.512505; ----tgkGTGTGCGTGtg------- ; cor=; Ncor= a 0 0 0 0 501 418 166 38 69 62 55 56 82 45 114 206 388 389 0 0 0 0 0 0 0 c 0 0 0 0 545 526 155 67 60 21 64 40 2153 48 87 123 595 280 0 0 0 0 0 0 0 g 0 0 0 0 628 1283 1562 2700 70 2733 45 2718 96 2713 95 2317 359 1722 0 0 0 0 0 0 0 t 0 0 0 0 1177 624 968 46 2652 35 2687 37 520 45 2555 205 1509 460 0 0 0 0 0 0 0

dyads_m4_rc_shift9 (dyads_m4_rc)
; positions_6nt_m3 versus dyads_m4_rc; m=30/33; ncol2=13; w=0; offset=8; strand=R; shift=9; score=0.494638; ---------GtGyGTGTGTktg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 355 343 33 99 27 36 31 12 42 33 142 267 369 0 0 0 c 0 0 0 0 0 0 0 0 0 304 608 51 2134 21 45 18 53 25 60 68 403 346 0 0 0 g 0 0 0 0 0 0 0 0 0 2240 251 3147 50 3190 33 3160 14 3156 52 1096 667 1862 0 0 0 t 0 0 0 0 0 0 0 0 0 370 2067 38 986 31 3155 60 3190 46 3124 1963 1932 692 0 0 0

dyads_m9_rc_shift8 (dyads_m9_rc)
; positions_6nt_m3 versus dyads_m9_rc; m=31/33; ncol2=14; w=0; offset=7; strand=R; shift=8; score=0.489615; --------tgkGTGTGTGTTtg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 431 373 145 79 87 64 61 91 50 108 86 176 374 356 0 0 0 c 0 0 0 0 0 0 0 0 441 464 152 70 30 32 47 48 57 43 67 63 345 367 0 0 0 g 0 0 0 0 0 0 0 0 555 1329 1505 2482 99 2538 87 2487 56 2450 94 478 637 1305 0 0 0 t 0 0 0 0 0 0 0 0 1266 527 891 62 2477 59 2498 67 2530 92 2446 1976 1337 665 0 0 0

dyads_m6_rc_shift1 (dyads_m6_rc)
; positions_6nt_m3 versus dyads_m6_rc; m=32/33; ncol2=13; w=0; offset=0; strand=R; shift=1; score=0.470899; -gtrTGTGTGTktg----------- ; cor=; Ncor= a 0 355 344 1805 52 47 18 44 9 38 44 144 270 345 0 0 0 0 0 0 0 0 0 0 0 c 0 351 415 98 30 24 19 21 30 15 33 48 362 346 0 0 0 0 0 0 0 0 0 0 0 g 0 1939 432 987 41 2937 28 2942 17 2945 41 936 619 1706 0 0 0 0 0 0 0 0 0 0 0 t 0 393 1847 148 2915 30 2973 31 2982 40 2920 1910 1787 641 0 0 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m9_rc_shift1 (oligos_7nt_mkv5_m9_rc)
; positions_6nt_m3 versus oligos_7nt_mkv5_m9_rc; m=33/33; ncol2=13; w=0; offset=0; strand=R; shift=1; score=0.425684; -ktTTGTGTsTGtg----------- ; cor=; Ncor= a 0 270 323 42 35 26 13 49 15 96 71 140 218 284 0 0 0 0 0 0 0 0 0 0 0 c 0 324 334 71 49 57 39 68 34 1213 111 183 389 315 0 0 0 0 0 0 0 0 0 0 0 g 0 796 432 298 36 1761 23 1715 44 472 176 1425 301 845 0 0 0 0 0 0 0 0 0 0 0 t 0 494 795 1473 1764 40 1809 52 1791 103 1526 136 976 440 0 0 0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m6_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m6_shift0 (oligos_7nt_mkv5_m6)
; oligos_7nt_mkv5_m6; m=0 (reference); ncol1=17; shift=0; ncol=17; tgsTGCTGyTGCTGytg ; Alignment reference a 167 226 113 47 59 58 27 40 40 30 21 38 39 45 109 190 250 c 335 230 1115 82 31 1919 38 44 1312 37 40 1972 68 82 1155 261 291 g 355 1425 770 45 2066 113 50 2073 102 35 2098 89 51 2015 200 279 1342 t 1343 319 202 2026 44 110 2085 43 746 2098 41 101 2042 58 736 1470 317

oligos_7nt_mkv5_m6_shift0 (oligos_7nt_mkv5_m6)
; oligos_7nt_mkv5_m6 versus oligos_7nt_mkv5_m6; m=1/2; ncol2=17; w=0; offset=0; strand=D; shift=0; score= 1; tgsTGCTGyTGCTGytg ; cor=; Ncor= a 167 226 113 47 59 58 27 40 40 30 21 38 39 45 109 190 250 c 335 230 1115 82 31 1919 38 44 1312 37 40 1972 68 82 1155 261 291 g 355 1425 770 45 2066 113 50 2073 102 35 2098 89 51 2015 200 279 1342 t 1343 319 202 2026 44 110 2085 43 746 2098 41 101 2042 58 736 1470 317

dyads_m3_rc_shift2 (dyads_m3_rc)
; oligos_7nt_mkv5_m6 versus dyads_m3_rc; m=2/2; ncol2=14; w=0; offset=2; strand=R; shift=2; score=0.799748; --ctGCTGCTGCTGct- ; cor=; Ncor= a 0 0 547 402 256 215 127 189 162 75 197 184 114 258 469 468 0 c 0 0 2643 729 171 4045 192 93 4245 157 96 4149 245 257 2845 704 0 g 0 0 744 534 4152 232 138 4365 164 108 4354 229 152 4047 721 572 0 t 0 0 833 3102 188 275 4310 120 196 4427 120 205 4256 205 732 3023 0

One-to-n matrix alignment; reference matrix: positions_7nt_m2_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m2_shift1 (positions_7nt_m2)
; positions_7nt_m2; m=0 (reference); ncol1=24; shift=1; ncol=25; -cacACACACACACACACACACACa ; Alignment reference a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894

positions_7nt_m2_shift1 (positions_7nt_m2)
; positions_7nt_m2 versus positions_7nt_m2; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894

positions_7nt_m9_shift1 (positions_7nt_m9)
; positions_7nt_m2 versus positions_7nt_m9; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.996994; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216

positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)
; positions_7nt_m2 versus positions_7nt_m3_rc; m=3/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.995373; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888

positions_7nt_m1_shift1 (positions_7nt_m1)
; positions_7nt_m2 versus positions_7nt_m1; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.992045; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835

dyads_m1_shift1 (dyads_m1)
; positions_7nt_m2 versus dyads_m1; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991564; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002

positions_7nt_m7_shift1 (positions_7nt_m7)
; positions_7nt_m2 versus positions_7nt_m7; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990022; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231

positions_6nt_m7_shift1 (positions_6nt_m7)
; positions_7nt_m2 versus positions_6nt_m7; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.988242; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062

positions_7nt_m4_shift1 (positions_7nt_m4)
; positions_7nt_m2 versus positions_7nt_m4; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987376; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233

positions_6nt_m2_shift1 (positions_6nt_m2)
; positions_7nt_m2 versus positions_6nt_m2; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.986339; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111

dyads_m8_shift1 (dyads_m8)
; positions_7nt_m2 versus dyads_m8; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.985464; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988

positions_6nt_m10_shift1 (positions_6nt_m10)
; positions_7nt_m2 versus positions_6nt_m10; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984009; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785

positions_6nt_m8_shift1 (positions_6nt_m8)
; positions_7nt_m2 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.943755; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0

positions_7nt_m5_shift2 (positions_7nt_m5)
; positions_7nt_m2 versus positions_7nt_m5; m=13/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.914548; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 c 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 g 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 t 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994

positions_6nt_m6_shift0 (positions_6nt_m6)
; positions_7nt_m2 versus positions_6nt_m6; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.912357; acamACACACACACACACACACac- ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 0 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 0 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 0 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141 0

positions_7nt_m8_shift0 (positions_7nt_m8)
; positions_7nt_m2 versus positions_7nt_m8; m=15/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.911648; acACACACACACACACACACACac- ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 0 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 0 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 0 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444 0

positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)
; positions_7nt_m2 versus positions_6nt_m5_rc; m=16/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.909032; acaCACACACACACACACACACac- ; cor=; Ncor= a 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 0 c 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 0 g 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 0 t 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346 0

positions_7nt_m6_shift2 (positions_7nt_m6)
; positions_7nt_m2 versus positions_7nt_m6; m=17/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.908983; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 c 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 g 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 t 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108

positions_7nt_m10_shift0 (positions_7nt_m10)
; positions_7nt_m2 versus positions_7nt_m10; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908486; acACACACACACACACACACACaC- ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 0 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 0 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 0 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221 0

positions_6nt_m4_shift2 (positions_6nt_m4)
; positions_7nt_m2 versus positions_6nt_m4; m=19/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.907128; --acrCACACACACACACACACACa ; cor=; Ncor= a 0 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 c 0 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 g 0 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 t 0 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646

positions_6nt_m9_shift0 (positions_6nt_m9)
; positions_7nt_m2 versus positions_6nt_m9; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.89924; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0

positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)
; positions_7nt_m2 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.865319; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0

dyads_m10_shift2 (dyads_m10)
; positions_7nt_m2 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=1; strand=D; shift=2; score=0.736123; --ACACACACACACACrCAC----- ; cor=; Ncor= a 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 0 0 0 0 c 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 0 0 0 0 g 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 0 0 0 0 t 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0 0 0 0 0

oligos_7nt_mkv5_m8_shift6 (oligos_7nt_mkv5_m8)
; positions_7nt_m2 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=5; strand=D; shift=6; score=0.656661; ------ACACACACACACACAC--- ; cor=; Ncor= a 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 0 c 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 0 g 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 0 t 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0 0

oligos_6nt_mkv4_m5_rc_shift4 (oligos_6nt_mkv4_m5_rc)
; positions_7nt_m2 versus oligos_6nt_mkv4_m5_rc; m=24/33; ncol2=16; w=0; offset=3; strand=R; shift=4; score=0.608027; ----acAsACACrCACAsac----- ; cor=; Ncor= a 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 0 0 0 c 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 0 0 0 g 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 0 0 0 t 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0 0 0 0

oligos_6nt_mkv4_m2_shift9 (oligos_6nt_mkv4_m2)
; positions_7nt_m2 versus oligos_6nt_mkv4_m2; m=25/33; ncol2=16; w=0; offset=8; strand=D; shift=9; score=0.591737; ---------caCwCACAyACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 c 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 g 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 t 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421

dyads_m7_shift1 (dyads_m7)
; positions_7nt_m2 versus dyads_m7; m=26/33; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.582325; -camACACACACrCac--------- ; cor=; Ncor= a 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 0 0 c 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 0 0 g 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 0 0 t 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0 0 0

positions_6nt_m1_shift6 (positions_6nt_m1)
; positions_7nt_m2 versus positions_6nt_m1; m=27/33; ncol2=15; w=0; offset=5; strand=D; shift=6; score=0.565945; ------acACACrCACACrca---- ; cor=; Ncor= a 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 0 0 0 c 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 0 0 0 g 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 0 0 0 t 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0 0 0 0

oligos_7nt_mkv5_m4_shift11 (oligos_7nt_mkv5_m4)
; positions_7nt_m2 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.522033; -----------caCACAcACACac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 c 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 g 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 t 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0

dyads_m9_shift1 (dyads_m9)
; positions_7nt_m2 versus dyads_m9; m=29/33; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.510435; -caAACACACACmca---------- ; cor=; Ncor= a 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 0 0 0 c 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 0 0 0 g 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 0 0 0 t 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m5_shift7 (oligos_7nt_mkv5_m5)
; positions_7nt_m2 versus oligos_7nt_mkv5_m5; m=30/33; ncol2=14; w=0; offset=6; strand=D; shift=7; score=0.50041; -------caCACGCACACmca---- ; cor=; Ncor= a 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 0 c 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 0 g 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 0 t 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0 0

dyads_m4_shift1 (dyads_m4)
; positions_7nt_m2 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.489373; -camACACACrCaC----------- ; cor=; Ncor= a 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 0 0 0 c 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 0 0 0 g 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 0 0 0 t 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0 0 0 0

dyads_m6_shift1 (dyads_m6)
; positions_7nt_m2 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.489006; -camACACACAyac----------- ; cor=; Ncor= a 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 0 0 0 c 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 0 0 0 g 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 0 0 0 t 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m9_shift9 (oligos_7nt_mkv5_m9)
; positions_7nt_m2 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=8; strand=D; shift=9; score=0.420606; ---------caCAsACACAAam--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 0 c 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 0 g 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 0 t 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m8_shift8 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)
; oligos_7nt_mkv5_m8; m=0 (reference); ncol1=16; shift=8; ncol=24; --------ACACACACACACACAC ; Alignment reference a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224

oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)
; oligos_7nt_mkv5_m8 versus oligos_7nt_mkv5_m8; m=1/33; ncol2=16; w=0; offset=0; strand=D; shift=8; score= 1; --------ACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224

oligos_6nt_mkv4_m5_rc_shift8 (oligos_6nt_mkv4_m5_rc)
; oligos_7nt_mkv5_m8 versus oligos_6nt_mkv4_m5_rc; m=2/33; ncol2=16; w=0; offset=0; strand=R; shift=8; score=0.912141; --------acAsACACrCACAsac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 c 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 g 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 t 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214

dyads_m10_shift6 (dyads_m10)
; oligos_7nt_mkv5_m8 versus dyads_m10; m=3/33; ncol2=18; w=-2; offset=-2; strand=D; shift=6; score=0.872418; ------ACACACACACACACrCAC ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123

positions_6nt_m1_shift8 (positions_6nt_m1)
; oligos_7nt_mkv5_m8 versus positions_6nt_m1; m=4/33; ncol2=15; w=0; offset=0; strand=D; shift=8; score=0.838054; --------acACACrCACACrca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 c 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 g 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 t 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0

dyads_m7_shift9 (dyads_m7)
; oligos_7nt_mkv5_m8 versus dyads_m7; m=5/33; ncol2=15; w=0; offset=1; strand=D; shift=9; score=0.826817; ---------camACACACACrCac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 c 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 g 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 t 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517

oligos_6nt_mkv4_m2_shift7 (oligos_6nt_mkv4_m2)
; oligos_7nt_mkv5_m8 versus oligos_6nt_mkv4_m2; m=6/33; ncol2=16; w=-1; offset=-1; strand=D; shift=7; score=0.807829; -------caCwCACAyACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 c 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 g 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 t 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0

oligos_7nt_mkv5_m4_shift9 (oligos_7nt_mkv5_m4)
; oligos_7nt_mkv5_m8 versus oligos_7nt_mkv5_m4; m=7/33; ncol2=13; w=0; offset=1; strand=D; shift=9; score=0.793847; ---------caCACAcACACac-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 c 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 g 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 t 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0

oligos_7nt_mkv5_m5_shift9 (oligos_7nt_mkv5_m5)
; oligos_7nt_mkv5_m8 versus oligos_7nt_mkv5_m5; m=8/33; ncol2=14; w=0; offset=1; strand=D; shift=9; score=0.731657; ---------caCACGCACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 c 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 g 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 t 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0

dyads_m9_shift9 (dyads_m9)
; oligos_7nt_mkv5_m8 versus dyads_m9; m=9/33; ncol2=14; w=0; offset=1; strand=D; shift=9; score=0.730385; ---------caAACACACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 c 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 g 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 t 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0

dyads_m6_shift11 (dyads_m6)
; oligos_7nt_mkv5_m8 versus dyads_m6; m=10/33; ncol2=13; w=0; offset=3; strand=D; shift=11; score=0.707559; -----------camACACACAyac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 c 0 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 g 0 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 t 0 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355

dyads_m4_shift9 (dyads_m4)
; oligos_7nt_mkv5_m8 versus dyads_m4; m=11/33; ncol2=13; w=0; offset=1; strand=D; shift=9; score=0.696853; ---------camACACACrCaC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 c 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 g 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 t 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0

positions_6nt_m8_shift3 (positions_6nt_m8)
; oligos_7nt_mkv5_m8 versus positions_6nt_m8; m=12/33; ncol2=23; w=-5; offset=-5; strand=D; shift=3; score=0.686766; ---caCACACACACACACACACAC ; cor=; Ncor= a 0 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 c 0 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 g 0 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 t 0 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470

positions_6nt_m4_shift0 (positions_6nt_m4)
; oligos_7nt_mkv5_m8 versus positions_6nt_m4; m=13/33; ncol2=24; w=-8; offset=-8; strand=D; shift=0; score=0.663169; acrCACACACACACACACACACac ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762

positions_6nt_m2_shift1 (positions_6nt_m2)
; oligos_7nt_mkv5_m8 versus positions_6nt_m2; m=14/33; ncol2=24; w=-7; offset=-7; strand=D; shift=1; score=0.662497; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256

positions_6nt_m10_shift3 (positions_6nt_m10)
; oligos_7nt_mkv5_m8 versus positions_6nt_m10; m=15/33; ncol2=24; w=-5; offset=-5; strand=D; shift=3; score=0.66245; ---cacamACACACACACACACAC ; cor=; Ncor= a 0 0 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 c 0 0 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 g 0 0 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 t 0 0 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506

positions_6nt_m6_shift4 (positions_6nt_m6)
; oligos_7nt_mkv5_m8 versus positions_6nt_m6; m=16/33; ncol2=24; w=-4; offset=-4; strand=D; shift=4; score=0.662311; ----acamACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 c 0 0 0 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 g 0 0 0 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 t 0 0 0 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618

positions_7nt_m7_shift1 (positions_7nt_m7)
; oligos_7nt_mkv5_m8 versus positions_7nt_m7; m=17/33; ncol2=24; w=-7; offset=-7; strand=D; shift=1; score=0.661346; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313

oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)
; oligos_7nt_mkv5_m8 versus oligos_7nt_mkv5_m9; m=18/33; ncol2=13; w=0; offset=3; strand=D; shift=11; score=0.66036; -----------caCAsACACAAam ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270

positions_7nt_m10_shift4 (positions_7nt_m10)
; oligos_7nt_mkv5_m8 versus positions_7nt_m10; m=19/33; ncol2=24; w=-4; offset=-4; strand=D; shift=4; score=0.660292; ----acACACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 c 0 0 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 g 0 0 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 t 0 0 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507

dyads_m8_shift1 (dyads_m8)
; oligos_7nt_mkv5_m8 versus dyads_m8; m=20/33; ncol2=24; w=-7; offset=-7; strand=D; shift=1; score=0.660292; -CaCACACACACACACACACACrC ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049

positions_7nt_m6_shift4 (positions_7nt_m6)
; oligos_7nt_mkv5_m8 versus positions_7nt_m6; m=21/33; ncol2=24; w=-4; offset=-4; strand=D; shift=4; score=0.659955; ----acaCACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 c 0 0 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 g 0 0 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 t 0 0 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613

positions_6nt_m5_rc_shift6 (positions_6nt_m5_rc)
; oligos_7nt_mkv5_m8 versus positions_6nt_m5_rc; m=22/33; ncol2=24; w=-2; offset=-2; strand=R; shift=6; score=0.659423; ------acaCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 c 0 0 0 0 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 g 0 0 0 0 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 t 0 0 0 0 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514

positions_7nt_m4_shift3 (positions_7nt_m4)
; oligos_7nt_mkv5_m8 versus positions_7nt_m4; m=23/33; ncol2=24; w=-5; offset=-5; strand=D; shift=3; score=0.659132; ---caCACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 c 0 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 g 0 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 t 0 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528

positions_7nt_m8_shift0 (positions_7nt_m8)
; oligos_7nt_mkv5_m8 versus positions_7nt_m8; m=24/33; ncol2=24; w=-8; offset=-8; strand=D; shift=0; score=0.658481; acACACACACACACACACACACac ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444

dyads_m1_shift1 (dyads_m1)
; oligos_7nt_mkv5_m8 versus dyads_m1; m=25/33; ncol2=24; w=-7; offset=-7; strand=D; shift=1; score=0.657608; -cacACACACACACACACACACaC ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034

positions_6nt_m9_shift2 (positions_6nt_m9)
; oligos_7nt_mkv5_m8 versus positions_6nt_m9; m=26/33; ncol2=24; w=-6; offset=-6; strand=D; shift=2; score=0.657234; --acaCacACACACACACACACAC ; cor=; Ncor= a 0 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 c 0 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 g 0 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 t 0 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820

positions_7nt_m9_shift3 (positions_7nt_m9)
; oligos_7nt_mkv5_m8 versus positions_7nt_m9; m=27/33; ncol2=24; w=-5; offset=-5; strand=D; shift=3; score=0.656961; ---caCACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 c 0 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 g 0 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 t 0 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783

positions_7nt_m2_shift3 (positions_7nt_m2)
; oligos_7nt_mkv5_m8 versus positions_7nt_m2; m=28/33; ncol2=24; w=-5; offset=-5; strand=D; shift=3; score=0.656661; ---cacACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 c 0 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 g 0 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 t 0 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564

positions_7nt_m3_rc_shift3 (positions_7nt_m3_rc)
; oligos_7nt_mkv5_m8 versus positions_7nt_m3_rc; m=29/33; ncol2=24; w=-5; offset=-5; strand=R; shift=3; score=0.656356; ---cacACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 c 0 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 g 0 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 t 0 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536

positions_7nt_m5_shift4 (positions_7nt_m5)
; oligos_7nt_mkv5_m8 versus positions_7nt_m5; m=30/33; ncol2=24; w=-4; offset=-4; strand=D; shift=4; score=0.655631; ----acaCACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 c 0 0 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 g 0 0 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 t 0 0 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493

positions_7nt_m1_shift5 (positions_7nt_m1)
; oligos_7nt_mkv5_m8 versus positions_7nt_m1; m=31/33; ncol2=24; w=-3; offset=-3; strand=D; shift=5; score=0.65508; -----cacACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 c 0 0 0 0 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 g 0 0 0 0 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 t 0 0 0 0 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307

positions_6nt_m7_shift1 (positions_6nt_m7)
; oligos_7nt_mkv5_m8 versus positions_6nt_m7; m=32/33; ncol2=24; w=-7; offset=-7; strand=D; shift=1; score=0.65446; -caCaCACACACACACACACACAC ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139

positions_6nt_m3_rc_shift2 (positions_6nt_m3_rc)
; oligos_7nt_mkv5_m8 versus positions_6nt_m3_rc; m=33/33; ncol2=24; w=-6; offset=-6; strand=R; shift=2; score=0.652173; --mmmmmmaCACACrCACACACaC ; cor=; Ncor= a 0 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 c 0 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 g 0 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 t 0 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m2_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m2_shift0 (oligos_7nt_mkv5_m2)
; oligos_7nt_mkv5_m2; m=0 (reference); ncol1=11; shift=0; ncol=11; hhCCACACCmm ; Alignment reference a 610 665 56 47 1899 120 1884 31 37 665 597 c 779 651 2175 2075 185 2039 272 2139 2175 670 740 g 352 414 33 72 129 81 56 70 39 560 463 t 597 608 74 144 125 98 126 98 87 443 538

oligos_7nt_mkv5_m2_shift0 (oligos_7nt_mkv5_m2)
; oligos_7nt_mkv5_m2 versus oligos_7nt_mkv5_m2; m=1/1; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; hhCCACACCmm ; cor=; Ncor= a 610 665 56 47 1899 120 1884 31 37 665 597 c 779 651 2175 2075 185 2039 272 2139 2175 670 740 g 352 414 33 72 129 81 56 70 39 560 463 t 597 608 74 144 125 98 126 98 87 443 538

One-to-n matrix alignment; reference matrix: positions_7nt_m1_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m1_shift1 (positions_7nt_m1)
; positions_7nt_m1; m=0 (reference); ncol1=24; shift=1; ncol=25; -cacACACACACACACACACACACa ; Alignment reference a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835

positions_7nt_m1_shift1 (positions_7nt_m1)
; positions_7nt_m1 versus positions_7nt_m1; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835

positions_6nt_m7_shift1 (positions_6nt_m7)
; positions_7nt_m1 versus positions_6nt_m7; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.996777; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062

dyads_m1_shift1 (dyads_m1)
; positions_7nt_m1 versus dyads_m1; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.994944; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002

positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)
; positions_7nt_m1 versus positions_7nt_m3_rc; m=4/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.994441; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888

positions_7nt_m2_shift1 (positions_7nt_m2)
; positions_7nt_m1 versus positions_7nt_m2; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.992045; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894

positions_7nt_m7_shift1 (positions_7nt_m7)
; positions_7nt_m1 versus positions_7nt_m7; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989526; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231

positions_7nt_m9_shift1 (positions_7nt_m9)
; positions_7nt_m1 versus positions_7nt_m9; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989155; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216

positions_7nt_m4_shift1 (positions_7nt_m4)
; positions_7nt_m1 versus positions_7nt_m4; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987347; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233

dyads_m8_shift1 (dyads_m8)
; positions_7nt_m1 versus dyads_m8; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.98522; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988

positions_6nt_m2_shift1 (positions_6nt_m2)
; positions_7nt_m1 versus positions_6nt_m2; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984898; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111

positions_6nt_m10_shift1 (positions_6nt_m10)
; positions_7nt_m1 versus positions_6nt_m10; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.981816; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785

positions_6nt_m8_shift1 (positions_6nt_m8)
; positions_7nt_m1 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.942915; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0

positions_7nt_m5_shift0 (positions_7nt_m5)
; positions_7nt_m1 versus positions_7nt_m5; m=13/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.915553; acaCACACACACACACACACACac- ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 0 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 0 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 0 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250 0

positions_6nt_m6_shift0 (positions_6nt_m6)
; positions_7nt_m1 versus positions_6nt_m6; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.912482; acamACACACACACACACACACac- ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 0 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 0 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 0 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141 0

positions_6nt_m4_shift2 (positions_6nt_m4)
; positions_7nt_m1 versus positions_6nt_m4; m=15/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910878; --acrCACACACACACACACACACa ; cor=; Ncor= a 0 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 c 0 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 g 0 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 t 0 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646

positions_6nt_m5_rc_shift2 (positions_6nt_m5_rc)
; positions_7nt_m1 versus positions_6nt_m5_rc; m=16/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.909991; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 c 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 g 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 t 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032

positions_7nt_m8_shift2 (positions_7nt_m8)
; positions_7nt_m1 versus positions_7nt_m8; m=17/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.909199; --acACACACACACACACACACACa ; cor=; Ncor= a 0 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 c 0 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 g 0 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 t 0 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222

positions_7nt_m6_shift2 (positions_7nt_m6)
; positions_7nt_m1 versus positions_7nt_m6; m=18/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.909154; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 c 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 g 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 t 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108

positions_7nt_m10_shift0 (positions_7nt_m10)
; positions_7nt_m1 versus positions_7nt_m10; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908302; acACACACACACACACACACACaC- ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 0 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 0 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 0 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221 0

positions_6nt_m9_shift0 (positions_6nt_m9)
; positions_7nt_m1 versus positions_6nt_m9; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.899516; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0

positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)
; positions_7nt_m1 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.860104; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0

dyads_m10_shift6 (dyads_m10)
; positions_7nt_m1 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=5; strand=D; shift=6; score=0.734497; ------ACACACACACACACrCAC- ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0

oligos_7nt_mkv5_m8_shift4 (oligos_7nt_mkv5_m8)
; positions_7nt_m1 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=3; strand=D; shift=4; score=0.65508; ----ACACACACACACACAC----- ; cor=; Ncor= a 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 0 0 0 c 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 0 0 0 g 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 0 0 0 t 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0 0 0 0

oligos_6nt_mkv4_m2_shift9 (oligos_6nt_mkv4_m2)
; positions_7nt_m1 versus oligos_6nt_mkv4_m2; m=24/33; ncol2=16; w=0; offset=8; strand=D; shift=9; score=0.610085; ---------caCwCACAyACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 c 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 g 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 t 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421

oligos_6nt_mkv4_m5_rc_shift2 (oligos_6nt_mkv4_m5_rc)
; positions_7nt_m1 versus oligos_6nt_mkv4_m5_rc; m=25/33; ncol2=16; w=0; offset=1; strand=R; shift=2; score=0.607777; --acAsACACrCACAsac------- ; cor=; Ncor= a 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 0 0 0 0 0 c 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 0 0 0 0 0 g 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 0 0 0 0 0 t 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0 0 0 0 0 0

dyads_m7_shift1 (dyads_m7)
; positions_7nt_m1 versus dyads_m7; m=26/33; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.567138; -camACACACACrCac--------- ; cor=; Ncor= a 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 0 0 c 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 0 0 g 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 0 0 t 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0 0 0

positions_6nt_m1_shift10 (positions_6nt_m1)
; positions_7nt_m1 versus positions_6nt_m1; m=27/33; ncol2=15; w=0; offset=9; strand=D; shift=10; score=0.564913; ----------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601

oligos_7nt_mkv5_m4_shift11 (oligos_7nt_mkv5_m4)
; positions_7nt_m1 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.526163; -----------caCACAcACACac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 c 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 g 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 t 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0

dyads_m9_shift1 (dyads_m9)
; positions_7nt_m1 versus dyads_m9; m=29/33; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.500735; -caAACACACACmca---------- ; cor=; Ncor= a 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 0 0 0 c 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 0 0 0 g 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 0 0 0 t 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m5_shift5 (oligos_7nt_mkv5_m5)
; positions_7nt_m1 versus oligos_7nt_mkv5_m5; m=30/33; ncol2=14; w=0; offset=4; strand=D; shift=5; score=0.499369; -----caCACGCACACmca------ ; cor=; Ncor= a 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 0 0 0 c 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 0 0 0 g 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 0 0 0 t 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0 0 0 0

dyads_m4_shift1 (dyads_m4)
; positions_7nt_m1 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.498469; -camACACACrCaC----------- ; cor=; Ncor= a 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 0 0 0 c 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 0 0 0 g 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 0 0 0 t 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0 0 0 0

dyads_m6_shift1 (dyads_m6)
; positions_7nt_m1 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.481126; -camACACACAyac----------- ; cor=; Ncor= a 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 0 0 0 c 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 0 0 0 g 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 0 0 0 t 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m9_shift7 (oligos_7nt_mkv5_m9)
; positions_7nt_m1 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=6; strand=D; shift=7; score=0.418029; -------caCAsACACAAam----- ; cor=; Ncor= a 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 0 0 0 c 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 0 0 0 g 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 0 0 0 t 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m5_shift7 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m5_shift7 (oligos_6nt_mkv4_m5)
; oligos_6nt_mkv4_m5; m=0 (reference); ncol1=16; shift=7; ncol=23; -------gtsTGTGyGTGTsTgt ; Alignment reference a 0 0 0 0 0 0 0 214 180 62 30 40 21 22 21 20 16 41 12 98 13 202 129 c 0 0 0 0 0 0 0 294 260 792 62 50 39 43 1077 48 32 62 38 611 57 217 297 g 0 0 0 0 0 0 0 895 280 760 38 1580 14 1604 24 1593 23 1556 28 898 67 1041 211 t 0 0 0 0 0 0 0 294 977 83 1567 27 1623 28 575 36 1626 38 1619 90 1560 237 1060

oligos_6nt_mkv4_m5_shift7 (oligos_6nt_mkv4_m5)
; oligos_6nt_mkv4_m5 versus oligos_6nt_mkv4_m5; m=1/33; ncol2=16; w=0; offset=0; strand=D; shift=7; score= 1; -------gtsTGTGyGTGTsTgt ; cor=; Ncor= a 0 0 0 0 0 0 0 214 180 62 30 40 21 22 21 20 16 41 12 98 13 202 129 c 0 0 0 0 0 0 0 294 260 792 62 50 39 43 1077 48 32 62 38 611 57 217 297 g 0 0 0 0 0 0 0 895 280 760 38 1580 14 1604 24 1593 23 1556 28 898 67 1041 211 t 0 0 0 0 0 0 0 294 977 83 1567 27 1623 28 575 36 1626 38 1619 90 1560 237 1060

oligos_7nt_mkv5_m8_rc_shift7 (oligos_7nt_mkv5_m8_rc)
; oligos_6nt_mkv4_m5 versus oligos_7nt_mkv5_m8_rc; m=2/33; ncol2=16; w=0; offset=0; strand=R; shift=7; score=0.912141; -------GTGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 1224 929 839 201 176 67 180 73 1978 55 133 73 155 65 855 646 c 0 0 0 0 0 0 0 1137 1414 1684 216 131 141 98 144 261 127 82 126 68 157 434 1252 g 0 0 0 0 0 0 0 7805 1031 8182 199 10841 68 10901 61 8641 55 10953 81 10941 72 9006 930 t 0 0 0 0 0 0 0 1079 7871 540 10629 97 10969 66 10967 365 11008 77 10965 81 10951 950 8417

dyads_m10_rc_shift5 (dyads_m10_rc)
; oligos_6nt_mkv4_m5 versus dyads_m10_rc; m=3/33; ncol2=18; w=-2; offset=-2; strand=R; shift=5; score=0.802024; -----GTGyGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 1123 902 380 480 221 201 229 125 245 110 261 88 252 141 2074 220 1055 739 c 0 0 0 0 0 877 1578 284 2725 180 355 87 269 69 179 64 171 86 208 286 342 600 1101 g 0 0 0 0 0 7303 744 9327 320 9671 113 9764 42 9807 58 9760 75 9753 129 7314 282 7513 1135 t 0 0 0 0 0 910 6989 222 6688 141 9544 133 9777 92 9866 128 9879 122 9735 539 9369 1045 7238

dyads_m7_rc_shift7 (dyads_m7_rc)
; oligos_6nt_mkv4_m5 versus dyads_m7_rc; m=4/33; ncol2=15; w=0; offset=0; strand=R; shift=7; score=0.767286; -------gtGyGTGTGTGTktg- ; cor=; Ncor= a 0 0 0 0 0 0 0 517 558 135 252 91 114 108 66 93 41 140 90 360 465 523 0 c 0 0 0 0 0 0 0 435 757 151 2268 81 139 38 113 52 94 64 100 139 495 453 0 g 0 0 0 0 0 0 0 2402 446 3437 176 3585 79 3616 30 3629 51 3543 97 1297 728 2128 0 t 0 0 0 0 0 0 0 496 2089 127 1154 93 3518 88 3641 76 3664 103 3563 2054 2162 746 0

positions_6nt_m1_rc_shift6 (positions_6nt_m1_rc)
; oligos_6nt_mkv4_m5 versus positions_6nt_m1_rc; m=5/33; ncol2=15; w=-1; offset=-1; strand=R; shift=6; score=0.760388; ------tgyGTGTGyGTGTgt-- ; cor=; Ncor= a 0 0 0 0 0 0 601 605 225 67 97 116 76 116 173 108 91 120 116 572 350 0 0 c 0 0 0 0 0 0 858 565 2345 89 179 54 193 61 2125 74 121 63 179 284 560 0 0 g 0 0 0 0 0 0 601 2074 237 3576 91 3556 25 3555 73 3551 54 3524 54 2532 435 0 0 t 0 0 0 0 0 0 1745 561 998 73 3438 79 3511 73 1434 72 3539 98 3456 417 2460 0 0

oligos_7nt_mkv5_m4_rc_shift9 (oligos_7nt_mkv5_m4_rc)
; oligos_6nt_mkv4_m5 versus oligos_7nt_mkv5_m4_rc; m=6/33; ncol2=13; w=0; offset=2; strand=R; shift=9; score=0.711097; ---------gtGTGTgTGTGtg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1279 913 50 29 50 48 740 84 53 42 83 726 1242 0 c 0 0 0 0 0 0 0 0 0 1022 1381 57 101 17 96 257 67 42 67 47 1558 663 0 g 0 0 0 0 0 0 0 0 0 5541 804 8808 48 8906 99 5812 265 8848 44 8776 794 5506 0 t 0 0 0 0 0 0 0 0 0 1185 5929 112 8849 54 8784 2218 8611 84 8874 121 5949 1616 0

dyads_m9_rc_shift8 (dyads_m9_rc)
; oligos_6nt_mkv4_m5 versus dyads_m9_rc; m=7/33; ncol2=14; w=0; offset=1; strand=R; shift=8; score=0.699925; --------tgkGTGTGTGTTtg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 431 373 145 79 87 64 61 91 50 108 86 176 374 356 0 c 0 0 0 0 0 0 0 0 441 464 152 70 30 32 47 48 57 43 67 63 345 367 0 g 0 0 0 0 0 0 0 0 555 1329 1505 2482 99 2538 87 2487 56 2450 94 478 637 1305 0 t 0 0 0 0 0 0 0 0 1266 527 891 62 2477 59 2498 67 2530 92 2446 1976 1337 665 0

oligos_6nt_mkv4_m2_rc_shift6 (oligos_6nt_mkv4_m2_rc)
; oligos_6nt_mkv4_m5 versus oligos_6nt_mkv4_m2_rc; m=8/33; ncol2=16; w=-1; offset=-1; strand=R; shift=6; score=0.697932; ------tgkGTGTrTGTGwGtg- ; cor=; Ncor= a 0 0 0 0 0 0 421 362 158 100 83 79 61 1618 50 69 71 78 840 208 394 410 0 c 0 0 0 0 0 0 432 382 215 95 70 38 26 41 50 23 68 33 231 117 379 219 0 g 0 0 0 0 0 0 465 1338 1092 2225 94 2331 75 757 70 2376 82 2340 137 1970 351 1513 0 t 0 0 0 0 0 0 1178 414 1031 76 2249 48 2334 80 2326 28 2275 45 1288 201 1372 354 0

oligos_7nt_mkv5_m5_rc_shift6 (oligos_7nt_mkv5_m5_rc)
; oligos_6nt_mkv4_m5 versus oligos_7nt_mkv5_m5_rc; m=9/33; ncol2=14; w=-1; offset=-1; strand=R; shift=6; score=0.694767; ------tgkGTGTGCGTGtg--- ; cor=; Ncor= a 0 0 0 0 0 0 501 418 166 38 69 62 55 56 82 45 114 206 388 389 0 0 0 c 0 0 0 0 0 0 545 526 155 67 60 21 64 40 2153 48 87 123 595 280 0 0 0 g 0 0 0 0 0 0 628 1283 1562 2700 70 2733 45 2718 96 2713 95 2317 359 1722 0 0 0 t 0 0 0 0 0 0 1177 624 968 46 2652 35 2687 37 520 45 2555 205 1509 460 0 0 0

dyads_m4_rc_shift11 (dyads_m4_rc)
; oligos_6nt_mkv4_m5 versus dyads_m4_rc; m=10/33; ncol2=13; w=0; offset=4; strand=R; shift=11; score=0.653662; -----------GtGyGTGTGTkt ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 355 343 33 99 27 36 31 12 42 33 142 267 c 0 0 0 0 0 0 0 0 0 0 0 304 608 51 2134 21 45 18 53 25 60 68 403 g 0 0 0 0 0 0 0 0 0 0 0 2240 251 3147 50 3190 33 3160 14 3156 52 1096 667 t 0 0 0 0 0 0 0 0 0 0 0 370 2067 38 986 31 3155 60 3190 46 3124 1963 1932

dyads_m6_rc_shift9 (dyads_m6_rc)
; oligos_6nt_mkv4_m5 versus dyads_m6_rc; m=11/33; ncol2=13; w=0; offset=2; strand=R; shift=9; score=0.651583; ---------gtrTGTGTGTktg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 355 344 1805 52 47 18 44 9 38 44 144 270 345 0 c 0 0 0 0 0 0 0 0 0 351 415 98 30 24 19 21 30 15 33 48 362 346 0 g 0 0 0 0 0 0 0 0 0 1939 432 987 41 2937 28 2942 17 2945 41 936 619 1706 0 t 0 0 0 0 0 0 0 0 0 393 1847 148 2915 30 2973 31 2982 40 2920 1910 1787 641 0

positions_6nt_m8_rc_shift5 (positions_6nt_m8_rc)
; oligos_6nt_mkv4_m5 versus positions_6nt_m8_rc; m=12/33; ncol2=23; w=-2; offset=-2; strand=R; shift=5; score=0.639281; -----gtGTGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 2027 1903 1470 1957 604 497 484 365 524 569 504 339 344 386 416 450 498 1550 c 0 0 0 0 0 1746 2595 1257 1950 373 939 152 663 182 2809 217 484 129 687 144 545 238 1753 g 0 0 0 0 0 10165 1687 11817 975 14341 246 14838 109 14777 257 14687 93 14960 95 14844 217 14478 861 t 0 0 0 0 0 1738 9491 1132 10794 358 13994 202 14539 193 12041 268 14760 243 14508 272 14464 462 11512

positions_6nt_m9_rc_shift5 (positions_6nt_m9_rc)
; oligos_6nt_mkv4_m5 versus positions_6nt_m9_rc; m=13/33; ncol2=24; w=-2; offset=-2; strand=R; shift=5; score=0.61447; -----gtGTGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 1244 1142 820 1256 194 189 204 139 193 331 227 127 141 140 223 178 300 631 c 0 0 0 0 0 1023 1499 660 1051 129 337 54 217 60 1952 105 195 49 300 61 256 151 1076 g 0 0 0 0 0 6677 1066 7825 511 9519 85 9636 49 9623 131 9499 64 9641 71 9522 169 9166 1286 t 0 0 0 0 0 1014 6251 653 7140 116 9347 64 9553 82 7544 127 9572 127 9447 152 9355 341 6965

positions_6nt_m5_shift7 (positions_6nt_m5)
; oligos_6nt_mkv4_m5 versus positions_6nt_m5; m=14/33; ncol2=24; w=0; offset=0; strand=D; shift=7; score=0.613865; -------gtGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 1346 1032 551 401 483 289 514 399 451 199 332 158 302 182 1358 236 c 0 0 0 0 0 0 0 1227 1705 484 910 233 703 215 2098 217 435 134 432 125 324 309 401 g 0 0 0 0 0 0 0 7409 910 9651 267 10093 179 10142 222 10215 79 10428 65 10505 130 8894 160 t 0 0 0 0 0 0 0 1092 7427 388 9496 265 9903 203 8355 191 10361 180 10419 142 10438 513 10277

positions_7nt_m9_rc_shift2 (positions_7nt_m9_rc)
; oligos_6nt_mkv4_m5 versus positions_7nt_m9_rc; m=15/33; ncol2=24; w=-5; offset=-5; strand=R; shift=2; score=0.608195; --tGTGTGTGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 1216 1316 715 783 406 1897 235 393 183 379 131 290 372 339 215 319 301 392 352 500 1229 c 0 0 1899 1199 1124 580 684 490 445 162 446 113 311 114 1786 152 319 121 508 126 546 258 1409 g 0 0 1299 7853 718 9602 363 8573 183 10752 97 10823 59 10909 170 10756 82 10771 118 10624 268 10214 830 t 0 0 7027 1073 8884 476 9988 481 10578 134 10715 126 10940 128 9113 194 10825 230 10514 299 10275 469 7973

positions_7nt_m2_rc_shift2 (positions_7nt_m2_rc)
; oligos_6nt_mkv4_m5 versus positions_7nt_m2_rc; m=16/33; ncol2=24; w=-5; offset=-5; strand=R; shift=2; score=0.608027; --tGTGTGTGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 894 970 487 564 248 1509 149 276 111 260 84 215 249 231 126 208 132 256 144 323 247 c 0 0 1394 902 772 424 457 379 335 105 320 82 212 68 1356 100 243 80 342 101 361 164 486 g 0 0 947 6171 492 7523 255 6600 130 8357 61 8409 35 8459 116 8362 64 8364 59 8219 166 7949 392 t 0 0 5592 784 7076 316 7867 339 8213 89 8335 76 8496 85 7106 134 8394 175 8294 251 8156 391 7702

positions_7nt_m5_rc_shift1 (positions_7nt_m5_rc)
; oligos_6nt_mkv4_m5 versus positions_7nt_m5_rc; m=17/33; ncol2=24; w=-6; offset=-6; strand=R; shift=1; score=0.607868; -gtGTGTGTGTGTGTGTGTGTGt ; cor=; Ncor= a 0 1250 994 561 341 493 287 1613 213 397 172 334 119 291 341 371 214 368 280 461 360 618 826 c 0 1186 1587 433 624 243 588 371 397 146 427 107 288 103 1667 160 370 137 524 163 587 309 1405 g 0 7163 872 9224 281 9623 225 8200 138 9935 76 10047 63 10067 195 9846 124 9804 184 9612 358 9032 1361 t 0 1002 7148 383 9355 242 9501 417 9853 123 9926 113 10131 140 8398 224 9893 292 9613 365 9296 642 7009

positions_7nt_m1_rc_shift0 (positions_7nt_m1_rc)
; oligos_6nt_mkv4_m5 versus positions_7nt_m1_rc; m=18/33; ncol2=24; w=-7; offset=-7; strand=R; shift=0; score=0.607777; tGTGTGTGTGTGTGTGTGTGTgt ; cor=; Ncor= a 835 882 469 306 163 307 147 1313 120 219 92 212 76 195 277 258 149 227 185 338 296 741 717 c 1236 789 702 195 364 142 336 247 224 102 258 48 194 64 1329 135 291 101 426 146 506 367 1070 g 847 6045 381 7681 128 7824 115 6542 74 7992 50 8052 33 8024 162 7821 93 7819 142 7519 416 5354 1145 t 5474 676 6840 210 7737 119 7794 290 7974 79 7992 80 8089 109 6624 178 7859 245 7639 389 7174 1930 5460

positions_7nt_m8_rc_shift3 (positions_7nt_m8_rc)
; oligos_6nt_mkv4_m5 versus positions_7nt_m8_rc; m=19/33; ncol2=24; w=-4; offset=-4; strand=R; shift=3; score=0.607303; ---gtGTGTGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 1444 1222 1288 535 510 246 411 166 389 172 426 358 318 186 312 216 380 313 874 626 c 0 0 0 1459 1853 1524 768 336 457 179 498 140 418 144 1997 165 363 142 547 183 542 484 976 g 0 0 0 8000 1299 8529 466 11129 175 11460 86 11558 62 11510 203 11550 81 11502 121 11271 382 8585 957 t 0 0 0 1326 7855 888 10460 254 11351 179 11479 142 11577 149 9671 196 11599 273 11345 395 10992 2286 9670

positions_6nt_m4_rc_shift7 (positions_6nt_m4_rc)
; oligos_6nt_mkv4_m5 versus positions_6nt_m4_rc; m=20/33; ncol2=24; w=0; offset=0; strand=R; shift=7; score=0.60506; -------gtGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 762 646 603 213 196 96 195 83 456 63 157 51 129 66 913 91 c 0 0 0 0 0 0 0 740 871 744 264 142 188 80 170 205 128 65 125 50 120 154 152 g 0 0 0 0 0 0 0 4259 642 4643 168 5939 80 6014 65 5114 66 6086 32 6144 58 5055 64 t 0 0 0 0 0 0 0 621 4223 392 5737 105 6018 93 6064 607 6125 74 6174 59 6138 260 6075

positions_7nt_m3_shift0 (positions_7nt_m3)
; oligos_6nt_mkv4_m5 versus positions_7nt_m3; m=21/33; ncol2=24; w=-7; offset=-7; strand=D; shift=0; score=0.604503; tGTGTGTGTGTGTGTGTGTGTgt ; cor=; Ncor= a 888 963 461 536 226 1564 180 293 127 244 96 220 105 246 267 248 144 260 184 326 294 1779 767 c 1351 874 789 386 460 344 358 128 215 77 271 55 232 87 1392 111 276 102 429 167 498 385 1201 g 905 6174 469 7546 225 6546 139 8227 64 8363 43 8415 47 8319 124 8240 82 8182 167 7963 345 5777 1038 t 5629 762 7054 305 7862 319 8096 125 8367 89 8363 83 8389 121 6990 174 8271 229 7993 317 7636 832 5767

dyads_m1_rc_shift0 (dyads_m1_rc)
; oligos_6nt_mkv4_m5 versus dyads_m1_rc; m=22/33; ncol2=24; w=-7; offset=-7; strand=R; shift=0; score=0.603566; tGtGTGTGTGTGTGTGTGTGTgt ; cor=; Ncor= a 1002 1034 1501 387 306 291 196 269 114 261 120 236 111 209 270 239 136 254 218 329 304 1781 800 c 1428 923 1040 286 452 110 335 103 242 85 347 63 223 70 1314 112 278 109 422 174 550 394 1153 g 961 6084 540 7832 172 8254 96 8296 47 8335 46 8404 42 8405 134 8271 99 8198 179 7980 362 5772 1069 t 5400 750 5710 286 7861 136 8164 123 8388 110 8278 88 8415 107 7073 169 8278 230 7972 308 7575 844 5769

positions_6nt_m7_rc_shift0 (positions_6nt_m7_rc)
; oligos_6nt_mkv4_m5 versus positions_6nt_m7_rc; m=23/33; ncol2=24; w=-7; offset=-7; strand=R; shift=0; score=0.602135; tGTGTGTGTGTGTGTGTGTGtGt ; cor=; Ncor= a 1062 1139 443 454 215 420 213 1568 170 308 147 305 157 300 422 371 346 376 454 545 1221 1008 1222 c 1569 929 638 266 464 187 432 337 321 122 358 82 271 101 1757 187 466 144 685 240 1326 586 1507 g 1035 7623 359 9528 164 9726 148 8217 116 9958 72 10013 69 9933 237 9672 182 9649 280 9231 861 7767 1373 t 6838 813 9064 256 9661 171 9711 382 9897 116 9927 104 10007 170 8088 274 9510 335 9085 488 7096 1143 6402

positions_6nt_m2_rc_shift6 (positions_6nt_m2_rc)
; oligos_6nt_mkv4_m5 versus positions_6nt_m2_rc; m=24/33; ncol2=24; w=-1; offset=-1; strand=R; shift=6; score=0.601289; ------tgtGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 0 1111 1256 1027 1006 336 335 138 322 130 1646 160 286 107 228 68 251 154 c 0 0 0 0 0 0 1827 1211 1449 814 422 201 272 128 270 304 255 102 181 87 181 80 260 g 0 0 0 0 0 0 1360 6633 1249 7183 313 9532 107 9678 117 7946 85 9760 60 9816 64 9728 189 t 0 0 0 0 0 0 5953 1151 6526 1248 9180 183 9734 123 9734 355 9751 103 9903 120 9938 192 9648

positions_7nt_m7_rc_shift6 (positions_7nt_m7_rc)
; oligos_6nt_mkv4_m5 versus positions_7nt_m7_rc; m=25/33; ncol2=24; w=-1; offset=-1; strand=R; shift=6; score=0.599476; ------tgtGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 0 1231 1313 959 554 331 436 187 401 199 817 182 314 135 304 145 334 203 c 0 0 0 0 0 0 1916 1206 1469 450 568 204 436 152 397 326 293 137 253 101 244 113 357 g 0 0 0 0 0 0 1302 7165 1248 9398 253 9946 141 10080 137 8742 120 10208 66 10219 95 10138 164 t 0 0 0 0 0 0 6347 1112 7120 394 9644 210 10032 163 10063 911 10201 137 10342 172 10312 211 10072

oligos_7nt_mkv5_m9_rc_shift7 (oligos_7nt_mkv5_m9_rc)
; oligos_6nt_mkv4_m5 versus oligos_7nt_mkv5_m9_rc; m=26/33; ncol2=13; w=0; offset=0; strand=R; shift=7; score=0.59826; -------ktTTGTGTsTGtg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 270 323 42 35 26 13 49 15 96 71 140 218 284 0 0 0 c 0 0 0 0 0 0 0 324 334 71 49 57 39 68 34 1213 111 183 389 315 0 0 0 g 0 0 0 0 0 0 0 796 432 298 36 1761 23 1715 44 472 176 1425 301 845 0 0 0 t 0 0 0 0 0 0 0 494 795 1473 1764 40 1809 52 1791 103 1526 136 976 440 0 0 0

positions_7nt_m4_rc_shift6 (positions_7nt_m4_rc)
; oligos_6nt_mkv4_m5 versus positions_7nt_m4_rc; m=27/33; ncol2=24; w=-1; offset=-1; strand=R; shift=6; score=0.598245; ------tgtGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 0 1233 1297 1386 528 408 419 221 364 172 386 170 683 161 267 174 310 209 c 0 0 0 0 0 0 1807 1159 1410 418 542 189 395 129 367 149 384 285 230 110 350 102 362 g 0 0 0 0 0 0 1221 6838 792 8981 245 9472 132 9630 72 9579 113 8427 133 9771 81 9691 123 t 0 0 0 0 0 0 6019 986 6692 353 9085 200 9532 157 9669 166 9613 885 9756 132 9675 177 9586

positions_6nt_m6_rc_shift3 (positions_6nt_m6_rc)
; oligos_6nt_mkv4_m5 versus positions_6nt_m6_rc; m=28/33; ncol2=24; w=-4; offset=-4; strand=R; shift=3; score=0.597911; ---gtGTGTGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 1141 950 717 498 618 395 780 130 292 75 229 101 1501 114 239 123 247 122 347 283 c 0 0 0 1161 1492 605 871 391 690 410 210 131 182 86 192 236 209 102 223 100 302 144 454 g 0 0 0 6364 924 7757 467 8244 354 7685 119 9116 51 9244 98 7597 92 9166 88 9073 157 8796 453 t 0 0 0 997 6297 584 7827 410 8224 788 9204 124 9355 104 9272 329 9248 156 9229 243 9082 376 8473

positions_6nt_m10_rc_shift4 (positions_6nt_m10_rc)
; oligos_6nt_mkv4_m5 versus positions_6nt_m10_rc; m=29/33; ncol2=24; w=-3; offset=-3; strand=R; shift=4; score=0.597469; ----tGTGTGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 785 908 478 506 355 625 113 208 49 168 68 1366 81 175 86 169 68 256 193 c 0 0 0 0 1260 756 755 375 518 335 164 90 130 66 140 186 142 74 169 69 206 99 346 g 0 0 0 0 875 5653 483 6829 333 6383 105 7675 40 7756 67 6248 72 7720 78 7668 106 7423 329 t 0 0 0 0 5158 761 6362 368 6872 735 7696 105 7859 88 7803 278 7783 109 7745 172 7698 300 7210

positions_7nt_m10_rc_shift7 (positions_7nt_m10_rc)
; oligos_6nt_mkv4_m5 versus positions_7nt_m10_rc; m=30/33; ncol2=24; w=0; offset=0; strand=R; shift=7; score=0.596522; -------GtGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 1221 1023 527 405 507 468 450 219 349 128 317 146 1478 154 334 249 c 0 0 0 0 0 0 0 1193 1920 393 861 230 2409 206 485 127 434 115 277 269 305 113 332 g 0 0 0 0 0 0 0 7628 898 9811 279 10121 280 10266 108 10453 63 10565 121 8961 100 10487 139 t 0 0 0 0 0 0 0 1077 7278 388 9574 261 7962 197 10307 190 10494 122 10575 411 10560 185 10399

dyads_m8_rc_shift6 (dyads_m8_rc)
; oligos_6nt_mkv4_m5 versus dyads_m8_rc; m=31/33; ncol2=24; w=-1; offset=-1; strand=R; shift=6; score=0.596216; ------tGyGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 0 988 1049 644 404 281 324 145 289 144 1269 131 238 112 194 102 230 146 c 0 0 0 0 0 0 1578 909 2296 346 518 155 430 135 327 255 292 103 168 59 258 66 279 g 0 0 0 0 0 0 944 5955 537 7677 211 8040 91 8166 96 6905 80 8262 52 8374 44 8298 71 t 0 0 0 0 0 0 5206 803 5239 289 7706 197 8050 126 8149 287 8213 113 8384 89 8312 122 8220

positions_7nt_m6_rc_shift7 (positions_7nt_m6_rc)
; oligos_6nt_mkv4_m5 versus positions_7nt_m6_rc; m=32/33; ncol2=24; w=0; offset=0; strand=R; shift=7; score=0.595916; -------gtGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 1314 1108 658 508 613 555 529 276 426 168 364 178 1359 192 368 226 c 0 0 0 0 0 0 0 1321 2020 523 984 308 2529 270 577 151 527 144 329 263 351 141 309 g 0 0 0 0 0 0 0 7534 1002 9649 365 10096 354 10279 137 10526 78 10687 120 9276 117 10610 121 t 0 0 0 0 0 0 0 1149 7188 488 9461 301 7880 240 10328 215 10545 123 10691 420 10658 199 10662

positions_6nt_m3_shift3 (positions_6nt_m3)
; oligos_6nt_mkv4_m5 versus positions_6nt_m3; m=33/33; ncol2=24; w=-4; offset=-4; strand=D; shift=3; score=0.591733; ---gtGtGTGTGTGyGTGTGtkk ; cor=; Ncor= a 0 0 0 706 680 497 902 143 113 101 66 117 72 126 244 108 119 146 143 227 472 711 663 c 0 0 0 591 913 397 618 94 134 36 175 33 117 58 1474 68 153 60 282 133 842 437 698 g 0 0 0 3680 646 4351 350 5253 63 5414 32 5399 30 5324 123 5316 75 5255 126 4915 1228 2606 1991 t 0 0 0 625 3363 357 3732 112 5292 51 5329 53 5383 94 3761 110 5255 141 5051 327 3060 1848 2250

One-to-n matrix alignment; reference matrix: positions_6nt_m10_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m10_shift1 (positions_6nt_m10)
; positions_6nt_m10; m=0 (reference); ncol1=24; shift=1; ncol=25; -cacamACACACACACACACACACa ; Alignment reference a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785

positions_6nt_m10_shift1 (positions_6nt_m10)
; positions_6nt_m10 versus positions_6nt_m10; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785

positions_7nt_m9_shift1 (positions_7nt_m9)
; positions_6nt_m10 versus positions_7nt_m9; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984224; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216

positions_7nt_m2_shift1 (positions_7nt_m2)
; positions_6nt_m10 versus positions_7nt_m2; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984009; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894

positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)
; positions_6nt_m10 versus positions_7nt_m3_rc; m=4/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.982075; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888

positions_6nt_m7_shift1 (positions_6nt_m7)
; positions_6nt_m10 versus positions_6nt_m7; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.981924; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062

positions_7nt_m1_shift1 (positions_7nt_m1)
; positions_6nt_m10 versus positions_7nt_m1; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.981816; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835

dyads_m1_shift1 (dyads_m1)
; positions_6nt_m10 versus dyads_m1; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.980697; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002

positions_6nt_m2_shift1 (positions_6nt_m2)
; positions_6nt_m10 versus positions_6nt_m2; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.978814; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111

positions_7nt_m7_shift1 (positions_7nt_m7)
; positions_6nt_m10 versus positions_7nt_m7; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.978567; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231

positions_7nt_m4_shift1 (positions_7nt_m4)
; positions_6nt_m10 versus positions_7nt_m4; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.977977; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233

dyads_m8_shift1 (dyads_m8)
; positions_6nt_m10 versus dyads_m8; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.971999; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988

positions_6nt_m8_shift1 (positions_6nt_m8)
; positions_6nt_m10 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.938883; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0

positions_6nt_m6_shift2 (positions_6nt_m6)
; positions_6nt_m10 versus positions_6nt_m6; m=13/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.918987; --acamACACACACACACACACACa ; cor=; Ncor= a 0 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 c 0 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 g 0 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 t 0 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950

positions_7nt_m10_shift2 (positions_7nt_m10)
; positions_6nt_m10 versus positions_7nt_m10; m=14/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.908654; --acACACACACACACACACACACa ; cor=; Ncor= a 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 c 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 g 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 t 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023

positions_7nt_m6_shift2 (positions_7nt_m6)
; positions_6nt_m10 versus positions_7nt_m6; m=15/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.908471; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 c 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 g 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 t 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108

positions_7nt_m5_shift2 (positions_7nt_m5)
; positions_6nt_m10 versus positions_7nt_m5; m=16/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.907244; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 c 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 g 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 t 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994

positions_7nt_m8_shift0 (positions_7nt_m8)
; positions_6nt_m10 versus positions_7nt_m8; m=17/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.905922; acACACACACACACACACACACac- ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 0 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 0 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 0 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444 0

positions_6nt_m9_shift0 (positions_6nt_m9)
; positions_6nt_m10 versus positions_6nt_m9; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.905504; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0

positions_6nt_m5_rc_shift2 (positions_6nt_m5_rc)
; positions_6nt_m10 versus positions_6nt_m5_rc; m=19/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.903768; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 c 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 g 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 t 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032

positions_6nt_m4_shift2 (positions_6nt_m4)
; positions_6nt_m10 versus positions_6nt_m4; m=20/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.903193; --acrCACACACACACACACACACa ; cor=; Ncor= a 0 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 c 0 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 g 0 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 t 0 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646

positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)
; positions_6nt_m10 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.886195; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0

dyads_m10_shift6 (dyads_m10)
; positions_6nt_m10 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=5; strand=D; shift=6; score=0.736308; ------ACACACACACACACrCAC- ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0

oligos_7nt_mkv5_m8_shift6 (oligos_7nt_mkv5_m8)
; positions_6nt_m10 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=5; strand=D; shift=6; score=0.66245; ------ACACACACACACACAC--- ; cor=; Ncor= a 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 0 c 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 0 g 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 0 t 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0 0

oligos_6nt_mkv4_m2_shift5 (oligos_6nt_mkv4_m2)
; positions_6nt_m10 versus oligos_6nt_mkv4_m2; m=24/33; ncol2=16; w=0; offset=4; strand=D; shift=5; score=0.603636; -----caCwCACAyACACmca---- ; cor=; Ncor= a 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 0 0 0 c 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 0 0 0 g 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 0 0 0 t 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0 0 0 0

oligos_6nt_mkv4_m5_rc_shift6 (oligos_6nt_mkv4_m5_rc)
; positions_6nt_m10 versus oligos_6nt_mkv4_m5_rc; m=25/33; ncol2=16; w=0; offset=5; strand=R; shift=6; score=0.597469; ------acAsACACrCACAsac--- ; cor=; Ncor= a 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 0 c 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 0 g 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 0 t 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0 0

dyads_m7_shift3 (dyads_m7)
; positions_6nt_m10 versus dyads_m7; m=26/33; ncol2=15; w=0; offset=2; strand=D; shift=3; score=0.569813; ---camACACACACrCac------- ; cor=; Ncor= a 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 c 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 g 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 t 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0

positions_6nt_m1_shift10 (positions_6nt_m1)
; positions_6nt_m10 versus positions_6nt_m1; m=27/33; ncol2=15; w=0; offset=9; strand=D; shift=10; score=0.557954; ----------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601

oligos_7nt_mkv5_m4_shift7 (oligos_7nt_mkv5_m4)
; positions_6nt_m10 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=6; strand=D; shift=7; score=0.526214; -------caCACAcACACac----- ; cor=; Ncor= a 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 0 0 0 c 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 0 0 0 g 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 0 0 0 t 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0 0 0 0

dyads_m9_shift3 (dyads_m9)
; positions_6nt_m10 versus dyads_m9; m=29/33; ncol2=14; w=0; offset=2; strand=D; shift=3; score=0.507538; ---caAACACACACmca-------- ; cor=; Ncor= a 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 0 c 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 0 g 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 0 t 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0 0

dyads_m6_shift3 (dyads_m6)
; positions_6nt_m10 versus dyads_m6; m=30/33; ncol2=13; w=0; offset=2; strand=D; shift=3; score=0.503549; ---camACACACAyac--------- ; cor=; Ncor= a 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 0 c 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 0 g 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 0 t 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0 0

dyads_m4_shift3 (dyads_m4)
; positions_6nt_m10 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=2; strand=D; shift=3; score=0.485405; ---camACACACrCaC--------- ; cor=; Ncor= a 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 0 c 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 0 g 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 0 t 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m5_shift11 (oligos_7nt_mkv5_m5)
; positions_6nt_m10 versus oligos_7nt_mkv5_m5; m=32/33; ncol2=14; w=0; offset=10; strand=D; shift=11; score=0.485047; -----------caCACGCACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 c 0 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 g 0 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 t 0 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501

oligos_7nt_mkv5_m9_shift9 (oligos_7nt_mkv5_m9)
; positions_6nt_m10 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=8; strand=D; shift=9; score=0.435597; ---------caCAsACACAAam--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 0 c 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 0 g 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 0 t 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m9_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m9_shift0 (oligos_6nt_mkv4_m9)
; oligos_6nt_mkv4_m9; m=0 (reference); ncol1=11; shift=0; ncol=11; mycCCACAGcv ; Alignment reference a 351 293 194 0 22 1229 47 1193 25 335 370 c 446 514 929 1366 1252 59 1259 95 36 476 370 g 285 244 167 14 74 64 49 67 1298 267 380 t 320 351 112 22 54 50 47 47 43 324 282

oligos_6nt_mkv4_m9_shift0 (oligos_6nt_mkv4_m9)
; oligos_6nt_mkv4_m9 versus oligos_6nt_mkv4_m9; m=1/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; mycCCACAGcv ; cor=; Ncor= a 351 293 194 0 22 1229 47 1193 25 335 370 c 446 514 929 1366 1252 59 1259 95 36 476 370 g 285 244 167 14 74 64 49 67 1298 267 380 t 320 351 112 22 54 50 47 47 43 324 282

oligos_6nt_mkv4_m1_shift0 (oligos_6nt_mkv4_m1)
; oligos_6nt_mkv4_m9 versus oligos_6nt_mkv4_m1; m=2/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score=0.771457; cycCCACAAmm ; cor=; Ncor= a 354 335 306 0 2 1250 50 1267 1364 427 379 c 516 530 804 1437 1382 94 1304 72 17 444 541 g 254 207 179 0 16 42 44 36 33 264 277 t 320 372 155 7 44 58 46 69 30 309 247

One-to-n matrix alignment; reference matrix: dyads_m4_shift10 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m4_shift10 (dyads_m4)
; dyads_m4; m=0 (reference); ncol1=13; shift=10; ncol=23; ----------camACACACrCaC ; Alignment reference a 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 c 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 g 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 t 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355

dyads_m4_shift10 (dyads_m4)
; dyads_m4 versus dyads_m4; m=1/33; ncol2=13; w=0; offset=0; strand=D; shift=10; score= 1; ----------camACACACrCaC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 c 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 g 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 t 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355

dyads_m6_shift10 (dyads_m6)
; dyads_m4 versus dyads_m6; m=2/33; ncol2=13; w=0; offset=0; strand=D; shift=10; score=0.86598; ----------camACACACAyac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 c 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 g 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 t 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355

oligos_7nt_mkv5_m4_shift10 (oligos_7nt_mkv5_m4)
; dyads_m4 versus oligos_7nt_mkv5_m4; m=3/33; ncol2=13; w=0; offset=0; strand=D; shift=10; score=0.857484; ----------caCACAcACACac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 c 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 g 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 t 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279

dyads_m9_shift10 (dyads_m9)
; dyads_m4 versus dyads_m9; m=4/33; ncol2=14; w=0; offset=0; strand=D; shift=10; score=0.827828; ----------caAACACACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 c 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 g 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 t 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373

dyads_m7_shift8 (dyads_m7)
; dyads_m4 versus dyads_m7; m=5/33; ncol2=15; w=-2; offset=-2; strand=D; shift=8; score=0.793844; --------camACACACACrCac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 c 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 g 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 t 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517

oligos_7nt_mkv5_m5_shift10 (oligos_7nt_mkv5_m5)
; dyads_m4 versus oligos_7nt_mkv5_m5; m=6/33; ncol2=14; w=0; offset=0; strand=D; shift=10; score=0.699014; ----------caCACGCACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 c 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 g 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 t 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418

oligos_7nt_mkv5_m8_shift9 (oligos_7nt_mkv5_m8)
; dyads_m4 versus oligos_7nt_mkv5_m8; m=7/33; ncol2=16; w=-1; offset=-1; strand=D; shift=9; score=0.696853; ---------ACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 c 0 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 g 0 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 t 0 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839

positions_6nt_m1_shift9 (positions_6nt_m1)
; dyads_m4 versus positions_6nt_m1; m=8/33; ncol2=15; w=-1; offset=-1; strand=D; shift=9; score=0.684058; ---------acACACrCACACrc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 c 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 g 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 t 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605

oligos_6nt_mkv4_m5_rc_shift11 (oligos_6nt_mkv4_m5_rc)
; dyads_m4 versus oligos_6nt_mkv4_m5_rc; m=9/33; ncol2=16; w=0; offset=1; strand=R; shift=11; score=0.653662; -----------acAsACACrCAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 c 0 0 0 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 g 0 0 0 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 t 0 0 0 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40

dyads_m10_shift5 (dyads_m10)
; dyads_m4 versus dyads_m10; m=10/33; ncol2=18; w=-5; offset=-5; strand=D; shift=5; score=0.648784; -----ACACACACACACACrCAC ; cor=; Ncor= a 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 c 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 g 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 t 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123

oligos_6nt_mkv4_m2_shift10 (oligos_6nt_mkv4_m2)
; dyads_m4 versus oligos_6nt_mkv4_m2; m=11/33; ncol2=16; w=0; offset=0; strand=D; shift=10; score=0.632586; ----------caCwCACAyACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 c 0 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 g 0 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 t 0 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100

oligos_7nt_mkv5_m9_shift8 (oligos_7nt_mkv5_m9)
; dyads_m4 versus oligos_7nt_mkv5_m9; m=12/33; ncol2=13; w=-2; offset=-2; strand=D; shift=8; score=0.535514; --------caCAsACACAAam-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 c 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 g 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 t 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0

positions_6nt_m8_shift6 (positions_6nt_m8)
; dyads_m4 versus positions_6nt_m8; m=13/33; ncol2=23; w=-4; offset=-4; strand=D; shift=6; score=0.506523; ------caCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 c 0 0 0 0 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 g 0 0 0 0 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 t 0 0 0 0 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484

positions_7nt_m1_shift10 (positions_7nt_m1)
; dyads_m4 versus positions_7nt_m1; m=14/33; ncol2=24; w=0; offset=0; strand=D; shift=10; score=0.498469; ----------cacACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 c 0 0 0 0 0 0 0 0 0 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 g 0 0 0 0 0 0 0 0 0 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 t 0 0 0 0 0 0 0 0 0 0 1042 717 741 296 338 185 227 149 258 277 195 76 212

positions_7nt_m8_shift7 (positions_7nt_m8)
; dyads_m4 versus positions_7nt_m8; m=15/33; ncol2=24; w=-3; offset=-3; strand=D; shift=7; score=0.496196; -------acACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 c 0 0 0 0 0 0 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 g 0 0 0 0 0 0 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 t 0 0 0 0 0 0 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389

positions_6nt_m3_rc_shift7 (positions_6nt_m3_rc)
; dyads_m4 versus positions_6nt_m3_rc; m=16/33; ncol2=24; w=-3; offset=-3; strand=R; shift=7; score=0.494638; -------mmmmmmaCACACrCAC ; cor=; Ncor= a 0 0 0 0 0 0 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 c 0 0 0 0 0 0 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 g 0 0 0 0 0 0 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 t 0 0 0 0 0 0 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117

positions_7nt_m3_rc_shift10 (positions_7nt_m3_rc)
; dyads_m4 versus positions_7nt_m3_rc; m=17/33; ncol2=24; w=0; offset=0; strand=R; shift=10; score=0.492329; ----------cacACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 c 0 0 0 0 0 0 0 0 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 g 0 0 0 0 0 0 0 0 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 t 0 0 0 0 0 0 0 0 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220

dyads_m1_shift10 (dyads_m1)
; dyads_m4 versus dyads_m1; m=18/33; ncol2=24; w=0; offset=0; strand=D; shift=10; score=0.491653; ----------cacACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 c 0 0 0 0 0 0 0 0 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 g 0 0 0 0 0 0 0 0 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 t 0 0 0 0 0 0 0 0 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236

positions_6nt_m9_shift5 (positions_6nt_m9)
; dyads_m4 versus positions_6nt_m9; m=19/33; ncol2=24; w=-5; offset=-5; strand=D; shift=5; score=0.489762; -----acaCacACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 c 0 0 0 0 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 g 0 0 0 0 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 t 0 0 0 0 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204

positions_7nt_m2_shift10 (positions_7nt_m2)
; dyads_m4 versus positions_7nt_m2; m=20/33; ncol2=24; w=0; offset=0; strand=D; shift=10; score=0.489373; ----------cacACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 c 0 0 0 0 0 0 0 0 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 g 0 0 0 0 0 0 0 0 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 t 0 0 0 0 0 0 0 0 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215

positions_7nt_m10_shift1 (positions_7nt_m10)
; dyads_m4 versus positions_7nt_m10; m=21/33; ncol2=24; w=-9; offset=-9; strand=D; shift=1; score=0.487222; -acACACACACACACACACACAC ; cor=; Ncor= a 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 c 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 g 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 t 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527

positions_7nt_m6_shift1 (positions_7nt_m6)
; dyads_m4 versus positions_7nt_m6; m=22/33; ncol2=24; w=-9; offset=-9; strand=D; shift=1; score=0.486965; -acaCACACACACACACACACAC ; cor=; Ncor= a 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 c 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 g 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 t 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658

positions_7nt_m5_shift9 (positions_7nt_m5)
; dyads_m4 versus positions_7nt_m5; m=23/33; ncol2=24; w=-1; offset=-1; strand=D; shift=9; score=0.486415; ---------acaCACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 c 0 0 0 0 0 0 0 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 g 0 0 0 0 0 0 0 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 t 0 0 0 0 0 0 0 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334

positions_6nt_m5_rc_shift3 (positions_6nt_m5_rc)
; dyads_m4 versus positions_6nt_m5_rc; m=24/33; ncol2=24; w=-7; offset=-7; strand=R; shift=3; score=0.486102; ---acaCACACACACACACACAC ; cor=; Ncor= a 0 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 c 0 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 g 0 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 t 0 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483

positions_6nt_m10_shift8 (positions_6nt_m10)
; dyads_m4 versus positions_6nt_m10; m=25/33; ncol2=24; w=-2; offset=-2; strand=D; shift=8; score=0.485405; --------cacamACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 c 0 0 0 0 0 0 0 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 g 0 0 0 0 0 0 0 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 t 0 0 0 0 0 0 0 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168

positions_6nt_m7_shift10 (positions_6nt_m7)
; dyads_m4 versus positions_6nt_m7; m=26/33; ncol2=24; w=0; offset=0; strand=D; shift=10; score=0.485205; ----------caCaCACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 c 0 0 0 0 0 0 0 0 0 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 g 0 0 0 0 0 0 0 0 0 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 t 0 0 0 0 0 0 0 0 0 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305

positions_7nt_m9_shift8 (positions_7nt_m9)
; dyads_m4 versus positions_7nt_m9; m=27/33; ncol2=24; w=-2; offset=-2; strand=D; shift=8; score=0.484641; --------caCACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 c 0 0 0 0 0 0 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 g 0 0 0 0 0 0 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 t 0 0 0 0 0 0 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379

positions_6nt_m6_shift9 (positions_6nt_m6)
; dyads_m4 versus positions_6nt_m6; m=28/33; ncol2=24; w=-1; offset=-1; strand=D; shift=9; score=0.484611; ---------acamACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 c 0 0 0 0 0 0 0 0 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 g 0 0 0 0 0 0 0 0 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 t 0 0 0 0 0 0 0 0 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229

positions_6nt_m2_shift6 (positions_6nt_m2)
; dyads_m4 versus positions_6nt_m2; m=29/33; ncol2=24; w=-4; offset=-4; strand=D; shift=6; score=0.479571; ------caCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 c 0 0 0 0 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 g 0 0 0 0 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 t 0 0 0 0 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322

positions_7nt_m4_shift0 (positions_7nt_m4)
; dyads_m4 versus positions_7nt_m4; m=30/33; ncol2=24; w=-10; offset=-10; strand=D; shift=0; score=0.475945; caCACACACACACACACACACac ; cor=; Ncor= a 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297

positions_7nt_m7_shift6 (positions_7nt_m7)
; dyads_m4 versus positions_7nt_m7; m=31/33; ncol2=24; w=-4; offset=-4; strand=D; shift=6; score=0.472799; ------caCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 c 0 0 0 0 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 g 0 0 0 0 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 t 0 0 0 0 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401

positions_6nt_m4_shift3 (positions_6nt_m4)
; dyads_m4 versus positions_6nt_m4; m=32/33; ncol2=24; w=-7; offset=-7; strand=D; shift=3; score=0.470146; ---acrCACACACACACACACAC ; cor=; Ncor= a 0 0 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 c 0 0 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 g 0 0 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 t 0 0 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196

dyads_m8_shift10 (dyads_m8)
; dyads_m4 versus dyads_m8; m=33/33; ncol2=24; w=0; offset=0; strand=D; shift=10; score=0.468881; ----------CaCACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 c 0 0 0 0 0 0 0 0 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 g 0 0 0 0 0 0 0 0 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 t 0 0 0 0 0 0 0 0 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m3_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m3_shift0 (oligos_6nt_mkv4_m3)
; oligos_6nt_mkv4_m3; m=0 (reference); ncol1=12; shift=0; ncol=12; mrCTGTCAaamg ; Alignment reference a 526 362 41 28 74 16 39 1314 942 891 393 301 c 353 229 1319 34 50 45 1321 36 139 210 434 341 g 252 522 20 27 1237 28 21 34 168 140 278 427 t 281 299 32 1323 51 1323 31 28 163 171 307 343

oligos_6nt_mkv4_m3_shift0 (oligos_6nt_mkv4_m3)
; oligos_6nt_mkv4_m3 versus oligos_6nt_mkv4_m3; m=1/1; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; mrCTGTCAaamg ; cor=; Ncor= a 526 362 41 28 74 16 39 1314 942 891 393 301 c 353 229 1319 34 50 45 1321 36 139 210 434 341 g 252 522 20 27 1237 28 21 34 168 140 278 427 t 281 299 32 1323 51 1323 31 28 163 171 307 343

One-to-n matrix alignment; reference matrix: positions_7nt_m6_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m6_shift1 (positions_7nt_m6)
; positions_7nt_m6; m=0 (reference); ncol1=24; shift=1; ncol=25; -acaCACACACACACACACACACac ; Alignment reference a 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 c 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 g 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 t 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314

positions_7nt_m6_shift1 (positions_7nt_m6)
; positions_7nt_m6 versus positions_7nt_m6; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 c 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 g 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 t 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314

positions_7nt_m10_shift1 (positions_7nt_m10)
; positions_7nt_m6 versus positions_7nt_m10; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.997722; -acACACACACACACACACACACaC ; cor=; Ncor= a 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 c 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 g 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 t 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221

positions_6nt_m5_rc_shift1 (positions_6nt_m5_rc)
; positions_7nt_m6 versus positions_6nt_m5_rc; m=3/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.99287; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 c 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 g 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 t 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346

positions_7nt_m5_shift1 (positions_7nt_m5)
; positions_7nt_m6 versus positions_7nt_m5; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.992659; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250

positions_6nt_m6_shift1 (positions_6nt_m6)
; positions_7nt_m6 versus positions_6nt_m6; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991185; -acamACACACACACACACACACac ; cor=; Ncor= a 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141

positions_6nt_m4_shift1 (positions_6nt_m4)
; positions_7nt_m6 versus positions_6nt_m4; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989443; -acrCACACACACACACACACACac ; cor=; Ncor= a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762

positions_7nt_m8_shift1 (positions_7nt_m8)
; positions_7nt_m6 versus positions_7nt_m8; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987064; -acACACACACACACACACACACac ; cor=; Ncor= a 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444

positions_6nt_m9_shift1 (positions_6nt_m9)
; positions_7nt_m6 versus positions_6nt_m9; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.976935; -acaCacACACACACACACACACac ; cor=; Ncor= a 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244

positions_6nt_m8_shift2 (positions_6nt_m8)
; positions_7nt_m6 versus positions_6nt_m8; m=9/33; ncol2=23; w=0; offset=1; strand=D; shift=2; score=0.945761; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027

positions_6nt_m3_rc_shift1 (positions_6nt_m3_rc)
; positions_7nt_m6 versus positions_6nt_m3_rc; m=10/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.913476; -mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706

positions_7nt_m7_shift2 (positions_7nt_m7)
; positions_7nt_m6 versus positions_7nt_m7; m=11/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.912285; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313

dyads_m8_shift2 (dyads_m8)
; positions_7nt_m6 versus dyads_m8; m=12/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.911584; --CaCACACACACACACACACACrC ; cor=; Ncor= a 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049

positions_7nt_m4_shift2 (positions_7nt_m4)
; positions_7nt_m6 versus positions_7nt_m4; m=13/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.911044; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297

positions_7nt_m9_shift0 (positions_7nt_m9)
; positions_7nt_m6 versus positions_7nt_m9; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910989; caCACACACACACACACACACACa- ; cor=; Ncor= a 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 0 c 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 0 g 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 0 t 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216 0

positions_6nt_m7_shift0 (positions_6nt_m7)
; positions_7nt_m6 versus positions_6nt_m7; m=15/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.91088; caCaCACACACACACACACACACa- ; cor=; Ncor= a 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 0 c 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 0 g 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 0 t 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062 0

dyads_m1_shift2 (dyads_m1)
; positions_7nt_m6 versus dyads_m1; m=16/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910576; --cacACACACACACACACACACaC ; cor=; Ncor= a 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034

positions_7nt_m1_shift0 (positions_7nt_m1)
; positions_7nt_m6 versus positions_7nt_m1; m=17/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.909154; cacACACACACACACACACACACa- ; cor=; Ncor= a 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 0 c 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 0 g 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 0 t 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835 0

positions_7nt_m2_shift0 (positions_7nt_m2)
; positions_7nt_m6 versus positions_7nt_m2; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908983; cacACACACACACACACACACACa- ; cor=; Ncor= a 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 0 c 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 0 g 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 0 t 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894 0

positions_7nt_m3_rc_shift0 (positions_7nt_m3_rc)
; positions_7nt_m6 versus positions_7nt_m3_rc; m=19/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.908923; cacACACACACACACACACACACa- ; cor=; Ncor= a 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 0 c 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 0 g 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 0 t 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888 0

positions_6nt_m10_shift0 (positions_6nt_m10)
; positions_7nt_m6 versus positions_6nt_m10; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908471; cacamACACACACACACACACACa- ; cor=; Ncor= a 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 0 c 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 0 g 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 0 t 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785 0

positions_6nt_m2_shift2 (positions_6nt_m2)
; positions_7nt_m6 versus positions_6nt_m2; m=21/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.906504; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256

dyads_m10_shift5 (dyads_m10)
; positions_7nt_m6 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=4; strand=D; shift=5; score=0.740579; -----ACACACACACACACrCAC-- ; cor=; Ncor= a 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 0 c 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 0 g 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 0 t 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0 0

oligos_7nt_mkv5_m8_shift5 (oligos_7nt_mkv5_m8)
; positions_7nt_m6 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=4; strand=D; shift=5; score=0.659955; -----ACACACACACACACAC---- ; cor=; Ncor= a 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 0 0 c 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 0 0 g 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 0 0 t 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0 0 0

oligos_6nt_mkv4_m2_shift4 (oligos_6nt_mkv4_m2)
; positions_7nt_m6 versus oligos_6nt_mkv4_m2; m=24/33; ncol2=16; w=0; offset=3; strand=D; shift=4; score=0.600229; ----caCwCACAyACACmca----- ; cor=; Ncor= a 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 0 0 0 0 c 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 0 0 0 0 g 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 0 0 0 0 t 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0 0 0 0 0

oligos_6nt_mkv4_m5_rc_shift9 (oligos_6nt_mkv4_m5_rc)
; positions_7nt_m6 versus oligos_6nt_mkv4_m5_rc; m=25/33; ncol2=16; w=0; offset=8; strand=R; shift=9; score=0.595916; ---------acAsACACrCACAsac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 c 0 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 g 0 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 t 0 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214

positions_6nt_m1_shift7 (positions_6nt_m1)
; positions_7nt_m6 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=6; strand=D; shift=7; score=0.56705; -------acACACrCACACrca--- ; cor=; Ncor= a 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 0 0 c 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 0 0 g 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 0 0 t 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0 0 0

dyads_m7_shift8 (dyads_m7)
; positions_7nt_m6 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=7; strand=D; shift=8; score=0.566228; --------camACACACACrCac-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 c 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 g 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 t 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0

oligos_7nt_mkv5_m4_shift6 (oligos_7nt_mkv5_m4)
; positions_7nt_m6 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=5; strand=D; shift=6; score=0.523899; ------caCACAcACACac------ ; cor=; Ncor= a 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 0 0 0 0 c 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 0 0 0 0 g 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 0 0 0 0 t 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0 0 0 0 0

dyads_m4_shift10 (dyads_m4)
; positions_7nt_m6 versus dyads_m4; m=29/33; ncol2=13; w=0; offset=9; strand=D; shift=10; score=0.486965; ----------camACACACrCaC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 c 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 g 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 t 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0

dyads_m9_shift2 (dyads_m9)
; positions_7nt_m6 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=1; strand=D; shift=2; score=0.486855; --caAACACACACmca--------- ; cor=; Ncor= a 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 0 0 c 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 0 0 g 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 0 0 t 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m5_shift8 (oligos_7nt_mkv5_m5)
; positions_7nt_m6 versus oligos_7nt_mkv5_m5; m=31/33; ncol2=14; w=0; offset=7; strand=D; shift=8; score=0.484316; --------caCACGCACACmca--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 c 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 g 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 t 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0

dyads_m6_shift2 (dyads_m6)
; positions_7nt_m6 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.482192; --camACACACAyac---------- ; cor=; Ncor= a 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 0 0 c 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 0 0 g 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 0 0 t 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m9_shift2 (oligos_7nt_mkv5_m9)
; positions_7nt_m6 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.423777; --caCAsACACAAam---------- ; cor=; Ncor= a 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 0 0 0 0 0 0 0 0 c 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 0 0 0 0 0 0 0 0 g 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 0 0 0 0 0 0 0 0 t 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: positions_6nt_m9_shift0 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m9_shift0 (positions_6nt_m9)
; positions_6nt_m9; m=0 (reference); ncol1=24; shift=0; ncol=24; acaCacACACACACACACACACac ; Alignment reference a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244

positions_6nt_m9_shift0 (positions_6nt_m9)
; positions_6nt_m9 versus positions_6nt_m9; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; acaCacACACACACACACACACac ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244

positions_7nt_m8_shift0 (positions_7nt_m8)
; positions_6nt_m9 versus positions_7nt_m8; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=0; score=0.987893; acACACACACACACACACACACac ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444

positions_7nt_m10_shift0 (positions_7nt_m10)
; positions_6nt_m9 versus positions_7nt_m10; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=0; score=0.981208; acACACACACACACACACACACaC ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221

positions_7nt_m5_shift0 (positions_7nt_m5)
; positions_6nt_m9 versus positions_7nt_m5; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=0; score=0.979142; acaCACACACACACACACACACac ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250

positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)
; positions_6nt_m9 versus positions_6nt_m5_rc; m=5/33; ncol2=24; w=0; offset=0; strand=R; shift=0; score=0.978278; acaCACACACACACACACACACac ; cor=; Ncor= a 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 c 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 g 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 t 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346

positions_6nt_m6_shift0 (positions_6nt_m6)
; positions_6nt_m9 versus positions_6nt_m6; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=0; score=0.977112; acamACACACACACACACACACac ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141

positions_7nt_m6_shift0 (positions_7nt_m6)
; positions_6nt_m9 versus positions_7nt_m6; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=0; score=0.976935; acaCACACACACACACACACACac ; cor=; Ncor= a 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 c 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 g 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 t 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314

positions_6nt_m4_shift0 (positions_6nt_m4)
; positions_6nt_m9 versus positions_6nt_m4; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=0; score=0.974739; acrCACACACACACACACACACac ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762

positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)
; positions_6nt_m9 versus positions_6nt_m3_rc; m=9/33; ncol2=24; w=0; offset=0; strand=R; shift=0; score=0.959767; mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706

positions_6nt_m8_shift1 (positions_6nt_m8)
; positions_6nt_m9 versus positions_6nt_m8; m=10/33; ncol2=23; w=0; offset=1; strand=D; shift=1; score=0.954408; -caCACACACACACACACACACac ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027

positions_7nt_m4_shift1 (positions_7nt_m4)
; positions_6nt_m9 versus positions_7nt_m4; m=11/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.906407; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297

positions_6nt_m10_shift1 (positions_6nt_m10)
; positions_6nt_m9 versus positions_6nt_m10; m=12/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.905504; -cacamACACACACACACACACAC ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908

positions_6nt_m2_shift1 (positions_6nt_m2)
; positions_6nt_m9 versus positions_6nt_m2; m=13/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.904567; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256

dyads_m1_shift1 (dyads_m1)
; positions_6nt_m9 versus dyads_m1; m=14/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.904482; -cacACACACACACACACACACaC ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034

dyads_m8_shift1 (dyads_m8)
; positions_6nt_m9 versus dyads_m8; m=15/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.903809; -CaCACACACACACACACACACrC ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049

positions_7nt_m7_shift1 (positions_7nt_m7)
; positions_6nt_m9 versus positions_7nt_m7; m=16/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.903631; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313

positions_7nt_m9_shift1 (positions_7nt_m9)
; positions_6nt_m9 versus positions_7nt_m9; m=17/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.903082; -caCACACACACACACACACACAC ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316

positions_6nt_m7_shift1 (positions_6nt_m7)
; positions_6nt_m9 versus positions_6nt_m7; m=18/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.901559; -caCaCACACACACACACACACAC ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139

positions_7nt_m1_shift1 (positions_7nt_m1)
; positions_6nt_m9 versus positions_7nt_m1; m=19/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.899516; -cacACACACACACACACACACAC ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882

positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)
; positions_6nt_m9 versus positions_7nt_m3_rc; m=20/33; ncol2=24; w=0; offset=1; strand=R; shift=1; score=0.899242; -cacACACACACACACACACACAC ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963

positions_7nt_m2_shift1 (positions_7nt_m2)
; positions_6nt_m9 versus positions_7nt_m2; m=21/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.89924; -cacACACACACACACACACACAC ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970

dyads_m10_shift6 (dyads_m10)
; positions_6nt_m9 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=6; strand=D; shift=6; score=0.738978; ------ACACACACACACACrCAC ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123

oligos_7nt_mkv5_m8_shift6 (oligos_7nt_mkv5_m8)
; positions_6nt_m9 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=6; strand=D; shift=6; score=0.657234; ------ACACACACACACACAC-- ; cor=; Ncor= a 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 c 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 g 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 t 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0

oligos_6nt_mkv4_m5_rc_shift6 (oligos_6nt_mkv4_m5_rc)
; positions_6nt_m9 versus oligos_6nt_mkv4_m5_rc; m=24/33; ncol2=16; w=0; offset=6; strand=R; shift=6; score=0.61447; ------acAsACACrCACAsac-- ; cor=; Ncor= a 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 c 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 g 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 t 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0

oligos_6nt_mkv4_m2_shift7 (oligos_6nt_mkv4_m2)
; positions_6nt_m9 versus oligos_6nt_mkv4_m2; m=25/33; ncol2=16; w=0; offset=7; strand=D; shift=7; score=0.592896; -------caCwCACAyACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 c 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 g 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 t 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0

positions_6nt_m1_shift8 (positions_6nt_m1)
; positions_6nt_m9 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=8; strand=D; shift=8; score=0.584313; --------acACACrCACACrca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 c 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 g 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 t 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0

dyads_m7_shift3 (dyads_m7)
; positions_6nt_m9 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=3; strand=D; shift=3; score=0.580494; ---camACACACACrCac------ ; cor=; Ncor= a 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 c 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 g 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 t 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0

oligos_7nt_mkv5_m4_shift9 (oligos_7nt_mkv5_m4)
; positions_6nt_m9 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=9; strand=D; shift=9; score=0.521506; ---------caCACAcACACac-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 c 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 g 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 t 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0

oligos_7nt_mkv5_m5_shift9 (oligos_7nt_mkv5_m5)
; positions_6nt_m9 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=9; strand=D; shift=9; score=0.517106; ---------caCACGCACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 c 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 g 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 t 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0

dyads_m9_shift3 (dyads_m9)
; positions_6nt_m9 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=3; strand=D; shift=3; score=0.505689; ---caAACACACACmca------- ; cor=; Ncor= a 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 c 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 g 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 t 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0

dyads_m4_shift5 (dyads_m4)
; positions_6nt_m9 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=5; strand=D; shift=5; score=0.489762; -----camACACACrCaC------ ; cor=; Ncor= a 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 c 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 g 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 t 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0

dyads_m6_shift3 (dyads_m6)
; positions_6nt_m9 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=3; strand=D; shift=3; score=0.483325; ---camACACACAyac-------- ; cor=; Ncor= a 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 c 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 g 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 t 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)
; positions_6nt_m9 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=11; strand=D; shift=11; score=0.418999; -----------caCAsACACAAam ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270

One-to-n matrix alignment; reference matrix: positions_7nt_m4_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m4_shift1 (positions_7nt_m4)
; positions_7nt_m4; m=0 (reference); ncol1=24; shift=1; ncol=25; -caCACACACACACACACACACaca ; Alignment reference a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233

positions_7nt_m4_shift1 (positions_7nt_m4)
; positions_7nt_m4 versus positions_7nt_m4; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233

dyads_m8_shift1 (dyads_m8)
; positions_7nt_m4 versus dyads_m8; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.996557; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988

positions_7nt_m7_shift1 (positions_7nt_m7)
; positions_7nt_m4 versus positions_7nt_m7; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.993574; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231

dyads_m1_shift1 (dyads_m1)
; positions_7nt_m4 versus dyads_m1; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.992017; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002

positions_6nt_m2_shift1 (positions_6nt_m2)
; positions_7nt_m4 versus positions_6nt_m2; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989888; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111

positions_7nt_m9_shift1 (positions_7nt_m9)
; positions_7nt_m4 versus positions_7nt_m9; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989389; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216

positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)
; positions_7nt_m4 versus positions_7nt_m3_rc; m=7/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.988097; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888

positions_7nt_m2_shift1 (positions_7nt_m2)
; positions_7nt_m4 versus positions_7nt_m2; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987376; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894

positions_6nt_m7_shift1 (positions_6nt_m7)
; positions_7nt_m4 versus positions_6nt_m7; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987375; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062

positions_7nt_m1_shift1 (positions_7nt_m1)
; positions_7nt_m4 versus positions_7nt_m1; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987347; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835

positions_6nt_m10_shift1 (positions_6nt_m10)
; positions_7nt_m4 versus positions_6nt_m10; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.977977; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785

positions_6nt_m8_shift1 (positions_6nt_m8)
; positions_7nt_m4 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.950584; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0

positions_7nt_m5_shift0 (positions_7nt_m5)
; positions_7nt_m4 versus positions_7nt_m5; m=13/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.913133; acaCACACACACACACACACACac- ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 0 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 0 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 0 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250 0

positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)
; positions_7nt_m4 versus positions_6nt_m5_rc; m=14/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.912568; acaCACACACACACACACACACac- ; cor=; Ncor= a 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 0 c 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 0 g 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 0 t 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346 0

positions_7nt_m6_shift0 (positions_7nt_m6)
; positions_7nt_m4 versus positions_7nt_m6; m=15/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.911044; acaCACACACACACACACACACac- ; cor=; Ncor= a 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 0 c 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 0 g 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 0 t 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314 0

positions_6nt_m4_shift0 (positions_6nt_m4)
; positions_7nt_m4 versus positions_6nt_m4; m=16/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910866; acrCACACACACACACACACACac- ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 0 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 0 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 0 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762 0

positions_7nt_m10_shift0 (positions_7nt_m10)
; positions_7nt_m4 versus positions_7nt_m10; m=17/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910278; acACACACACACACACACACACaC- ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 0 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 0 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 0 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221 0

positions_7nt_m8_shift0 (positions_7nt_m8)
; positions_7nt_m4 versus positions_7nt_m8; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.909686; acACACACACACACACACACACac- ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 0 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 0 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 0 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444 0

positions_6nt_m6_shift0 (positions_6nt_m6)
; positions_7nt_m4 versus positions_6nt_m6; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.906854; acamACACACACACACACACACac- ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 0 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 0 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 0 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141 0

positions_6nt_m9_shift0 (positions_6nt_m9)
; positions_7nt_m4 versus positions_6nt_m9; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.906407; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0

positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)
; positions_7nt_m4 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.858196; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0

dyads_m10_shift6 (dyads_m10)
; positions_7nt_m4 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=5; strand=D; shift=6; score=0.739009; ------ACACACACACACACrCAC- ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0

oligos_7nt_mkv5_m8_shift6 (oligos_7nt_mkv5_m8)
; positions_7nt_m4 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=5; strand=D; shift=6; score=0.659132; ------ACACACACACACACAC--- ; cor=; Ncor= a 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 0 c 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 0 g 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 0 t 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0 0

oligos_6nt_mkv4_m5_rc_shift8 (oligos_6nt_mkv4_m5_rc)
; positions_7nt_m4 versus oligos_6nt_mkv4_m5_rc; m=24/33; ncol2=16; w=0; offset=7; strand=R; shift=8; score=0.598245; --------acAsACACrCACAsac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 c 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 g 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 t 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0

oligos_6nt_mkv4_m2_shift5 (oligos_6nt_mkv4_m2)
; positions_7nt_m4 versus oligos_6nt_mkv4_m2; m=25/33; ncol2=16; w=0; offset=4; strand=D; shift=5; score=0.595027; -----caCwCACAyACACmca---- ; cor=; Ncor= a 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 0 0 0 c 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 0 0 0 g 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 0 0 0 t 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0 0 0 0

positions_6nt_m1_shift10 (positions_6nt_m1)
; positions_7nt_m4 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=9; strand=D; shift=10; score=0.571436; ----------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601

dyads_m7_shift9 (dyads_m7)
; positions_7nt_m4 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=8; strand=D; shift=9; score=0.555879; ---------camACACACACrCac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 c 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 g 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 t 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0

oligos_7nt_mkv5_m4_shift7 (oligos_7nt_mkv5_m4)
; positions_7nt_m4 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=6; strand=D; shift=7; score=0.523928; -------caCACAcACACac----- ; cor=; Ncor= a 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 0 0 0 c 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 0 0 0 g 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 0 0 0 t 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0 0 0 0

oligos_7nt_mkv5_m5_shift1 (oligos_7nt_mkv5_m5)
; positions_7nt_m4 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.503422; -caCACGCACACmca---------- ; cor=; Ncor= a 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 0 0 0 0 0 0 0 c 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 0 0 0 0 0 0 0 g 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 0 0 0 0 0 0 0 t 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0 0 0 0 0 0 0 0

dyads_m9_shift11 (dyads_m9)
; positions_7nt_m4 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=10; strand=D; shift=11; score=0.502794; -----------caAACACACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 c 0 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 g 0 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 t 0 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431

dyads_m6_shift11 (dyads_m6)
; positions_7nt_m4 versus dyads_m6; m=31/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.47715; -----------camACACACAyac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 c 0 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 g 0 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 t 0 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0

dyads_m4_shift11 (dyads_m4)
; positions_7nt_m4 versus dyads_m4; m=32/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.475945; -----------camACACACrCaC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 c 0 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 g 0 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 t 0 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0

oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)
; positions_7nt_m4 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.422951; -----------caCAsACACAAam- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0

One-to-n matrix alignment; reference matrix: positions_6nt_m8_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m8_shift1 (positions_6nt_m8)
; positions_6nt_m8; m=0 (reference); ncol1=23; shift=1; ncol=24; -caCACACACACACACACACACac ; Alignment reference a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027

positions_6nt_m8_shift1 (positions_6nt_m8)
; positions_6nt_m8 versus positions_6nt_m8; m=1/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score= 1; -caCACACACACACACACACACac ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027

positions_6nt_m9_shift0 (positions_6nt_m9)
; positions_6nt_m8 versus positions_6nt_m9; m=2/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.954408; acaCacACACACACACACACACac ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244

positions_7nt_m4_shift1 (positions_7nt_m4)
; positions_6nt_m8 versus positions_7nt_m4; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.950584; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297

dyads_m8_shift1 (dyads_m8)
; positions_6nt_m8 versus dyads_m8; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.948915; -CaCACACACACACACACACACrC ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049

dyads_m1_shift1 (dyads_m1)
; positions_6nt_m8 versus dyads_m1; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.948907; -cacACACACACACACACACACaC ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034

positions_7nt_m8_shift0 (positions_7nt_m8)
; positions_6nt_m8 versus positions_7nt_m8; m=6/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.948782; acACACACACACACACACACACac ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444

positions_7nt_m7_shift1 (positions_7nt_m7)
; positions_6nt_m8 versus positions_7nt_m7; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.947773; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313

positions_6nt_m2_shift1 (positions_6nt_m2)
; positions_6nt_m8 versus positions_6nt_m2; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.946964; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256

positions_7nt_m10_shift0 (positions_7nt_m10)
; positions_6nt_m8 versus positions_7nt_m10; m=9/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.946684; acACACACACACACACACACACaC ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221

positions_7nt_m5_shift0 (positions_7nt_m5)
; positions_6nt_m8 versus positions_7nt_m5; m=10/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.946429; acaCACACACACACACACACACac ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250

positions_7nt_m9_shift1 (positions_7nt_m9)
; positions_6nt_m8 versus positions_7nt_m9; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.946372; -caCACACACACACACACACACAC ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316

positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)
; positions_6nt_m8 versus positions_6nt_m5_rc; m=12/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.946007; acaCACACACACACACACACACac ; cor=; Ncor= a 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 c 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 g 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 t 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346

positions_7nt_m6_shift0 (positions_7nt_m6)
; positions_6nt_m8 versus positions_7nt_m6; m=13/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.945761; acaCACACACACACACACACACac ; cor=; Ncor= a 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 c 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 g 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 t 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314

positions_6nt_m6_shift0 (positions_6nt_m6)
; positions_6nt_m8 versus positions_6nt_m6; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.944443; acamACACACACACACACACACac ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141

positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)
; positions_6nt_m8 versus positions_7nt_m3_rc; m=15/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.944211; -cacACACACACACACACACACAC ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963

positions_6nt_m4_shift0 (positions_6nt_m4)
; positions_6nt_m8 versus positions_6nt_m4; m=16/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.943956; acrCACACACACACACACACACac ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762

positions_7nt_m2_shift1 (positions_7nt_m2)
; positions_6nt_m8 versus positions_7nt_m2; m=17/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.943755; -cacACACACACACACACACACAC ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970

positions_6nt_m7_shift1 (positions_6nt_m7)
; positions_6nt_m8 versus positions_6nt_m7; m=18/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.943095; -caCaCACACACACACACACACAC ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139

positions_7nt_m1_shift1 (positions_7nt_m1)
; positions_6nt_m8 versus positions_7nt_m1; m=19/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.942915; -cacACACACACACACACACACAC ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882

positions_6nt_m10_shift1 (positions_6nt_m10)
; positions_6nt_m8 versus positions_6nt_m10; m=20/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.938883; -cacamACACACACACACACACAC ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908

positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)
; positions_6nt_m8 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.908608; mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706

dyads_m10_shift6 (dyads_m10)
; positions_6nt_m8 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=5; strand=D; shift=6; score=0.770595; ------ACACACACACACACrCAC ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123

oligos_7nt_mkv5_m8_shift6 (oligos_7nt_mkv5_m8)
; positions_6nt_m8 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=5; strand=D; shift=6; score=0.686766; ------ACACACACACACACAC-- ; cor=; Ncor= a 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 c 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 g 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 t 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0

oligos_6nt_mkv4_m5_rc_shift6 (oligos_6nt_mkv4_m5_rc)
; positions_6nt_m8 versus oligos_6nt_mkv4_m5_rc; m=24/33; ncol2=16; w=0; offset=5; strand=R; shift=6; score=0.639281; ------acAsACACrCACAsac-- ; cor=; Ncor= a 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 c 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 g 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 t 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0

oligos_6nt_mkv4_m2_shift7 (oligos_6nt_mkv4_m2)
; positions_6nt_m8 versus oligos_6nt_mkv4_m2; m=25/33; ncol2=16; w=0; offset=6; strand=D; shift=7; score=0.619664; -------caCwCACAyACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 c 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 g 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 t 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0

positions_6nt_m1_shift8 (positions_6nt_m1)
; positions_6nt_m8 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=7; strand=D; shift=8; score=0.609057; --------acACACrCACACrca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 c 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 g 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 t 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0

dyads_m7_shift3 (dyads_m7)
; positions_6nt_m8 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=2; strand=D; shift=3; score=0.597214; ---camACACACACrCac------ ; cor=; Ncor= a 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 c 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 g 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 t 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0

oligos_7nt_mkv5_m4_shift3 (oligos_7nt_mkv5_m4)
; positions_6nt_m8 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=2; strand=D; shift=3; score=0.544673; ---caCACAcACACac-------- ; cor=; Ncor= a 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 0 0 0 0 0 0 c 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 0 0 0 0 0 0 g 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 0 0 0 0 0 0 t 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m5_shift9 (oligos_7nt_mkv5_m5)
; positions_6nt_m8 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=8; strand=D; shift=9; score=0.537212; ---------caCACGCACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 c 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 g 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 t 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0

dyads_m9_shift3 (dyads_m9)
; positions_6nt_m8 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=2; strand=D; shift=3; score= 0.5152; ---caAACACACACmca------- ; cor=; Ncor= a 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 c 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 g 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 t 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0

dyads_m4_shift5 (dyads_m4)
; positions_6nt_m8 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=4; strand=D; shift=5; score=0.506523; -----camACACACrCaC------ ; cor=; Ncor= a 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 c 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 g 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 t 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0

dyads_m6_shift3 (dyads_m6)
; positions_6nt_m8 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=2; strand=D; shift=3; score=0.496034; ---camACACACAyac-------- ; cor=; Ncor= a 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 c 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 g 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 t 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)
; positions_6nt_m8 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.435863; -----------caCAsACACAAam ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m4_shift11 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m4_shift11 (oligos_7nt_mkv5_m4)
; oligos_7nt_mkv5_m4; m=0 (reference); ncol1=13; shift=11; ncol=24; -----------caCACAcACACac ; Alignment reference a 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 c 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 g 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 t 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279

oligos_7nt_mkv5_m4_shift11 (oligos_7nt_mkv5_m4)
; oligos_7nt_mkv5_m4 versus oligos_7nt_mkv5_m4; m=1/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score= 1; -----------caCACAcACACac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 c 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 g 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 t 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279

dyads_m6_shift11 (dyads_m6)
; oligos_7nt_mkv5_m4 versus dyads_m6; m=2/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score=0.858881; -----------camACACACAyac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 c 0 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 g 0 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 t 0 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355

dyads_m4_shift11 (dyads_m4)
; oligos_7nt_mkv5_m4 versus dyads_m4; m=3/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score=0.857484; -----------camACACACrCaC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 c 0 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 g 0 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 t 0 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355

oligos_7nt_mkv5_m5_shift11 (oligos_7nt_mkv5_m5)
; oligos_7nt_mkv5_m4 versus oligos_7nt_mkv5_m5; m=4/33; ncol2=14; w=0; offset=0; strand=D; shift=11; score=0.799822; -----------caCACGCACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 c 0 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 g 0 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 t 0 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418

dyads_m9_shift11 (dyads_m9)
; oligos_7nt_mkv5_m4 versus dyads_m9; m=5/33; ncol2=14; w=0; offset=0; strand=D; shift=11; score=0.798816; -----------caAACACACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 c 0 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 g 0 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 t 0 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373

oligos_7nt_mkv5_m8_shift10 (oligos_7nt_mkv5_m8)
; oligos_7nt_mkv5_m4 versus oligos_7nt_mkv5_m8; m=6/33; ncol2=16; w=-1; offset=-1; strand=D; shift=10; score=0.793847; ----------ACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 c 0 0 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 g 0 0 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 t 0 0 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839

positions_6nt_m1_shift10 (positions_6nt_m1)
; oligos_7nt_mkv5_m4 versus positions_6nt_m1; m=7/33; ncol2=15; w=-1; offset=-1; strand=D; shift=10; score=0.781268; ----------acACACrCACACrc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 c 0 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 g 0 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 t 0 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605

dyads_m7_shift9 (dyads_m7)
; oligos_7nt_mkv5_m4 versus dyads_m7; m=8/33; ncol2=15; w=-2; offset=-2; strand=D; shift=9; score=0.780174; ---------camACACACACrCac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 c 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 g 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 t 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517

oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)
; oligos_7nt_mkv5_m4 versus oligos_7nt_mkv5_m9; m=9/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score=0.779584; -----------caCAsACACAAam ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270

oligos_6nt_mkv4_m2_shift9 (oligos_6nt_mkv4_m2)
; oligos_7nt_mkv5_m4 versus oligos_6nt_mkv4_m2; m=10/33; ncol2=16; w=-2; offset=-2; strand=D; shift=9; score=0.758749; ---------caCwCACAyACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 c 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 g 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 t 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362

oligos_6nt_mkv4_m5_rc_shift10 (oligos_6nt_mkv4_m5_rc)
; oligos_7nt_mkv5_m4 versus oligos_6nt_mkv4_m5_rc; m=11/33; ncol2=16; w=-1; offset=-1; strand=R; shift=10; score=0.711097; ----------acAsACACrCACAs ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 c 0 0 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 g 0 0 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 t 0 0 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62

dyads_m10_shift8 (dyads_m10)
; oligos_7nt_mkv5_m4 versus dyads_m10; m=12/33; ncol2=18; w=-3; offset=-3; strand=D; shift=8; score=0.701278; --------ACACACACACACACrC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 c 0 0 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 g 0 0 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 t 0 0 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380

positions_6nt_m8_shift9 (positions_6nt_m8)
; oligos_7nt_mkv5_m4 versus positions_6nt_m8; m=13/33; ncol2=23; w=-2; offset=-2; strand=D; shift=9; score=0.544673; ---------caCACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 c 0 0 0 0 0 0 0 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 g 0 0 0 0 0 0 0 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 t 0 0 0 0 0 0 0 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524

positions_6nt_m4_shift2 (positions_6nt_m4)
; oligos_7nt_mkv5_m4 versus positions_6nt_m4; m=14/33; ncol2=24; w=-9; offset=-9; strand=D; shift=2; score=0.52993; --acrCACACACACACACACACAC ; cor=; Ncor= a 0 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 c 0 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 g 0 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 t 0 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603

positions_6nt_m6_shift0 (positions_6nt_m6)
; oligos_7nt_mkv5_m4 versus positions_6nt_m6; m=15/33; ncol2=24; w=-11; offset=-11; strand=D; shift=0; score=0.526805; acamACACACACACACACACACac ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141

positions_6nt_m10_shift5 (positions_6nt_m10)
; oligos_7nt_mkv5_m4 versus positions_6nt_m10; m=16/33; ncol2=24; w=-6; offset=-6; strand=D; shift=5; score=0.526214; -----cacamACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 c 0 0 0 0 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 g 0 0 0 0 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 t 0 0 0 0 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625

positions_7nt_m1_shift1 (positions_7nt_m1)
; oligos_7nt_mkv5_m4 versus positions_7nt_m1; m=17/33; ncol2=24; w=-10; offset=-10; strand=D; shift=1; score=0.526163; -cacACACACACACACACACACAC ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882

positions_6nt_m2_shift3 (positions_6nt_m2)
; oligos_7nt_mkv5_m4 versus positions_6nt_m2; m=18/33; ncol2=24; w=-8; offset=-8; strand=D; shift=3; score=0.526094; ---caCACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 c 0 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 g 0 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 t 0 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006

positions_6nt_m7_shift1 (positions_6nt_m7)
; oligos_7nt_mkv5_m4 versus positions_6nt_m7; m=19/33; ncol2=24; w=-10; offset=-10; strand=D; shift=1; score=0.525607; -caCaCACACACACACACACACAC ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139

positions_7nt_m5_shift0 (positions_7nt_m5)
; oligos_7nt_mkv5_m4 versus positions_7nt_m5; m=20/33; ncol2=24; w=-11; offset=-11; strand=D; shift=0; score=0.525534; acaCACACACACACACACACACac ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250

positions_7nt_m7_shift11 (positions_7nt_m7)
; oligos_7nt_mkv5_m4 versus positions_7nt_m7; m=21/33; ncol2=24; w=0; offset=0; strand=D; shift=11; score=0.524788; -----------caCACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 c 0 0 0 0 0 0 0 0 0 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 g 0 0 0 0 0 0 0 0 0 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 t 0 0 0 0 0 0 0 0 0 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314

positions_6nt_m5_rc_shift8 (positions_6nt_m5_rc)
; oligos_7nt_mkv5_m4 versus positions_6nt_m5_rc; m=22/33; ncol2=24; w=-3; offset=-3; strand=R; shift=8; score=0.524704; --------acaCACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 c 0 0 0 0 0 0 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 g 0 0 0 0 0 0 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 t 0 0 0 0 0 0 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451

dyads_m1_shift3 (dyads_m1)
; oligos_7nt_mkv5_m4 versus dyads_m1; m=23/33; ncol2=24; w=-8; offset=-8; strand=D; shift=3; score=0.52454; ---cacACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 c 0 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 g 0 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 t 0 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387

positions_7nt_m10_shift6 (positions_7nt_m10)
; oligos_7nt_mkv5_m4 versus positions_7nt_m10; m=24/33; ncol2=24; w=-5; offset=-5; strand=D; shift=6; score=0.524231; ------acACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 c 0 0 0 0 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 g 0 0 0 0 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 t 0 0 0 0 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450

positions_7nt_m4_shift5 (positions_7nt_m4)
; oligos_7nt_mkv5_m4 versus positions_7nt_m4; m=25/33; ncol2=24; w=-6; offset=-6; strand=D; shift=5; score=0.523928; -----caCACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 c 0 0 0 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 g 0 0 0 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 t 0 0 0 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419

positions_7nt_m6_shift6 (positions_7nt_m6)
; oligos_7nt_mkv5_m4 versus positions_7nt_m6; m=26/33; ncol2=24; w=-5; offset=-5; strand=D; shift=6; score=0.523899; ------acaCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 c 0 0 0 0 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 g 0 0 0 0 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 t 0 0 0 0 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529

dyads_m8_shift3 (dyads_m8)
; oligos_7nt_mkv5_m4 versus dyads_m8; m=27/33; ncol2=24; w=-8; offset=-8; strand=D; shift=3; score=0.523645; ---CaCACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 c 0 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 g 0 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 t 0 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404

positions_7nt_m8_shift0 (positions_7nt_m8)
; oligos_7nt_mkv5_m4 versus positions_7nt_m8; m=28/33; ncol2=24; w=-11; offset=-11; strand=D; shift=0; score=0.522508; acACACACACACACACACACACac ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444

positions_7nt_m9_shift1 (positions_7nt_m9)
; oligos_7nt_mkv5_m4 versus positions_7nt_m9; m=29/33; ncol2=24; w=-10; offset=-10; strand=D; shift=1; score=0.522281; -caCACACACACACACACACACAC ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316

positions_7nt_m2_shift1 (positions_7nt_m2)
; oligos_7nt_mkv5_m4 versus positions_7nt_m2; m=30/33; ncol2=24; w=-10; offset=-10; strand=D; shift=1; score=0.522033; -cacACACACACACACACACACAC ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970

positions_6nt_m9_shift2 (positions_6nt_m9)
; oligos_7nt_mkv5_m4 versus positions_6nt_m9; m=31/33; ncol2=24; w=-9; offset=-9; strand=D; shift=2; score=0.521506; --acaCacACACACACACACACAC ; cor=; Ncor= a 0 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 c 0 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 g 0 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 t 0 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820

positions_7nt_m3_rc_shift9 (positions_7nt_m3_rc)
; oligos_7nt_mkv5_m4 versus positions_7nt_m3_rc; m=32/33; ncol2=24; w=-2; offset=-2; strand=R; shift=9; score=0.521049; ---------cacACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 c 0 0 0 0 0 0 0 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 g 0 0 0 0 0 0 0 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 t 0 0 0 0 0 0 0 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244

positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)
; oligos_7nt_mkv5_m4 versus positions_6nt_m3_rc; m=33/33; ncol2=24; w=-11; offset=-11; strand=R; shift=0; score=0.519472; mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706

One-to-n matrix alignment; reference matrix: positions_6nt_m7_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m7_shift1 (positions_6nt_m7)
; positions_6nt_m7; m=0 (reference); ncol1=24; shift=1; ncol=25; -caCaCACACACACACACACACACa ; Alignment reference a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062

positions_6nt_m7_shift1 (positions_6nt_m7)
; positions_6nt_m7 versus positions_6nt_m7; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062

positions_7nt_m1_shift1 (positions_7nt_m1)
; positions_6nt_m7 versus positions_7nt_m1; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.996777; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835

positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)
; positions_6nt_m7 versus positions_7nt_m3_rc; m=3/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score= 0.9925; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888

dyads_m1_shift1 (dyads_m1)
; positions_6nt_m7 versus dyads_m1; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.992266; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002

positions_7nt_m9_shift1 (positions_7nt_m9)
; positions_6nt_m7 versus positions_7nt_m9; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991115; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216

positions_7nt_m7_shift1 (positions_7nt_m7)
; positions_6nt_m7 versus positions_7nt_m7; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.988506; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231

positions_7nt_m2_shift1 (positions_7nt_m2)
; positions_6nt_m7 versus positions_7nt_m2; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.988242; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894

positions_7nt_m4_shift1 (positions_7nt_m4)
; positions_6nt_m7 versus positions_7nt_m4; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987375; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233

dyads_m8_shift1 (dyads_m8)
; positions_6nt_m7 versus dyads_m8; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984395; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988

positions_6nt_m2_shift1 (positions_6nt_m2)
; positions_6nt_m7 versus positions_6nt_m2; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.983399; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111

positions_6nt_m10_shift1 (positions_6nt_m10)
; positions_6nt_m7 versus positions_6nt_m10; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.981924; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785

positions_6nt_m8_shift1 (positions_6nt_m8)
; positions_6nt_m7 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.943095; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0

positions_7nt_m5_shift0 (positions_7nt_m5)
; positions_6nt_m7 versus positions_7nt_m5; m=13/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.914459; acaCACACACACACACACACACac- ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 0 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 0 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 0 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250 0

positions_6nt_m4_shift2 (positions_6nt_m4)
; positions_6nt_m7 versus positions_6nt_m4; m=14/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.914283; --acrCACACACACACACACACACa ; cor=; Ncor= a 0 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 c 0 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 g 0 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 t 0 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646

positions_6nt_m5_rc_shift2 (positions_6nt_m5_rc)
; positions_6nt_m7 versus positions_6nt_m5_rc; m=15/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.912174; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 c 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 g 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 t 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032

positions_7nt_m6_shift2 (positions_7nt_m6)
; positions_6nt_m7 versus positions_7nt_m6; m=16/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.91088; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 c 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 g 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 t 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108

positions_7nt_m8_shift2 (positions_7nt_m8)
; positions_6nt_m7 versus positions_7nt_m8; m=17/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910129; --acACACACACACACACACACACa ; cor=; Ncor= a 0 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 c 0 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 g 0 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 t 0 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222

positions_7nt_m10_shift2 (positions_7nt_m10)
; positions_6nt_m7 versus positions_7nt_m10; m=18/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.908797; --acACACACACACACACACACACa ; cor=; Ncor= a 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 c 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 g 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 t 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023

positions_6nt_m6_shift0 (positions_6nt_m6)
; positions_6nt_m7 versus positions_6nt_m6; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.906723; acamACACACACACACACACACac- ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 0 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 0 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 0 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141 0

positions_6nt_m9_shift0 (positions_6nt_m9)
; positions_6nt_m7 versus positions_6nt_m9; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.901559; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0

positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)
; positions_6nt_m7 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.86155; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0

dyads_m10_shift6 (dyads_m10)
; positions_6nt_m7 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=5; strand=D; shift=6; score=0.734244; ------ACACACACACACACrCAC- ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0

oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)
; positions_6nt_m7 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=7; strand=D; shift=8; score=0.65446; --------ACACACACACACACAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0

oligos_6nt_mkv4_m2_shift9 (oligos_6nt_mkv4_m2)
; positions_6nt_m7 versus oligos_6nt_mkv4_m2; m=24/33; ncol2=16; w=0; offset=8; strand=D; shift=9; score=0.608179; ---------caCwCACAyACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 c 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 g 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 t 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421

oligos_6nt_mkv4_m5_rc_shift2 (oligos_6nt_mkv4_m5_rc)
; positions_6nt_m7 versus oligos_6nt_mkv4_m5_rc; m=25/33; ncol2=16; w=0; offset=1; strand=R; shift=2; score=0.602135; --acAsACACrCACAsac------- ; cor=; Ncor= a 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 0 0 0 0 0 c 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 0 0 0 0 0 g 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 0 0 0 0 0 t 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0 0 0 0 0 0

positions_6nt_m1_shift4 (positions_6nt_m1)
; positions_6nt_m7 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=3; strand=D; shift=4; score=0.563192; ----acACACrCACACrca------ ; cor=; Ncor= a 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 0 0 0 0 0 c 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 0 0 0 0 0 g 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 0 0 0 0 0 t 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0 0 0 0 0 0

dyads_m7_shift3 (dyads_m7)
; positions_6nt_m7 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=2; strand=D; shift=3; score=0.556779; ---camACACACACrCac------- ; cor=; Ncor= a 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 c 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 g 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 t 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0

oligos_7nt_mkv5_m4_shift11 (oligos_7nt_mkv5_m4)
; positions_6nt_m7 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.525607; -----------caCACAcACACac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 c 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 g 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 t 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0

oligos_7nt_mkv5_m5_shift5 (oligos_7nt_mkv5_m5)
; positions_6nt_m7 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=4; strand=D; shift=5; score=0.500263; -----caCACGCACACmca------ ; cor=; Ncor= a 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 0 0 0 c 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 0 0 0 g 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 0 0 0 t 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0 0 0 0

dyads_m4_shift1 (dyads_m4)
; positions_6nt_m7 versus dyads_m4; m=30/33; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.485205; -camACACACrCaC----------- ; cor=; Ncor= a 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 0 0 0 c 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 0 0 0 g 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 0 0 0 t 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0 0 0 0

dyads_m9_shift11 (dyads_m9)
; positions_6nt_m7 versus dyads_m9; m=31/33; ncol2=14; w=0; offset=10; strand=D; shift=11; score=0.482782; -----------caAACACACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 c 0 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 g 0 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 t 0 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431

dyads_m6_shift7 (dyads_m6)
; positions_6nt_m7 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=6; strand=D; shift=7; score=0.474485; -------camACACACAyac----- ; cor=; Ncor= a 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 c 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 g 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 t 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0

oligos_7nt_mkv5_m9_shift7 (oligos_7nt_mkv5_m9)
; positions_6nt_m7 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=6; strand=D; shift=7; score=0.417777; -------caCAsACACAAam----- ; cor=; Ncor= a 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 0 0 0 c 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 0 0 0 g 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 0 0 0 t 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m1_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m1_shift0 (oligos_6nt_mkv4_m1)
; oligos_6nt_mkv4_m1; m=0 (reference); ncol1=11; shift=0; ncol=11; cycCCACAAmm ; Alignment reference a 354 335 306 0 2 1250 50 1267 1364 427 379 c 516 530 804 1437 1382 94 1304 72 17 444 541 g 254 207 179 0 16 42 44 36 33 264 277 t 320 372 155 7 44 58 46 69 30 309 247

oligos_6nt_mkv4_m1_shift0 (oligos_6nt_mkv4_m1)
; oligos_6nt_mkv4_m1 versus oligos_6nt_mkv4_m1; m=1/3; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; cycCCACAAmm ; cor=; Ncor= a 354 335 306 0 2 1250 50 1267 1364 427 379 c 516 530 804 1437 1382 94 1304 72 17 444 541 g 254 207 179 0 16 42 44 36 33 264 277 t 320 372 155 7 44 58 46 69 30 309 247

oligos_6nt_mkv4_m9_shift0 (oligos_6nt_mkv4_m9)
; oligos_6nt_mkv4_m1 versus oligos_6nt_mkv4_m9; m=2/3; ncol2=11; w=0; offset=0; strand=D; shift=0; score=0.771457; mycCCACAGcv ; cor=; Ncor= a 351 293 194 0 22 1229 47 1193 25 335 370 c 446 514 929 1366 1252 59 1259 95 36 476 370 g 285 244 167 14 74 64 49 67 1298 267 380 t 320 351 112 22 54 50 47 47 43 324 282

dyads_m5_shift0 (dyads_m5)
; oligos_6nt_mkv4_m1 versus dyads_m5; m=3/3; ncol2=11; w=0; offset=0; strand=D; shift=0; score=0.706608; ccACCACCAcc ; cor=; Ncor= a 849 627 3918 50 30 4141 38 14 3899 676 705 c 2252 2408 191 4112 4096 103 4058 4126 239 2169 2498 g 690 543 129 102 115 126 110 85 188 692 474 t 681 894 234 208 231 102 266 247 146 935 795

One-to-n matrix alignment; reference matrix: dyads_m2_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m2_shift0 (dyads_m2)
; dyads_m2; m=0 (reference); ncol1=17; shift=0; ncol=17; GaGAGAGAGAGAGAGaG ; Alignment reference a 1146 5072 674 6098 581 6400 516 6520 527 6554 534 6417 568 6169 757 5112 1251 c 601 904 326 610 226 569 166 521 148 520 134 571 200 633 274 1020 526 g 5388 771 6362 387 6628 275 6791 285 6812 285 6823 311 6662 380 6323 751 5329 t 505 893 278 545 205 396 167 314 153 281 149 341 210 458 286 757 534

dyads_m2_shift0 (dyads_m2)
; dyads_m2 versus dyads_m2; m=1/2; ncol2=17; w=0; offset=0; strand=D; shift=0; score= 1; GaGAGAGAGAGAGAGaG ; cor=; Ncor= a 1146 5072 674 6098 581 6400 516 6520 527 6554 534 6417 568 6169 757 5112 1251 c 601 904 326 610 226 569 166 521 148 520 134 571 200 633 274 1020 526 g 5388 771 6362 387 6628 275 6791 285 6812 285 6823 311 6662 380 6323 751 5329 t 505 893 278 545 205 396 167 314 153 281 149 341 210 458 286 757 534

oligos_7nt_mkv5_m7_rc_shift3 (oligos_7nt_mkv5_m7_rc)
; dyads_m2 versus oligos_7nt_mkv5_m7_rc; m=2/2; ncol2=14; w=0; offset=3; strand=R; shift=3; score=0.80743; ---aGAGAGArAGAGag ; cor=; Ncor= a 0 0 0 4174 1102 5431 368 5778 381 5780 2077 5753 383 5699 403 4307 1206 c 0 0 0 719 524 332 147 286 76 293 156 244 136 252 143 820 471 g 0 0 0 960 4387 444 5779 243 5870 266 4049 301 5809 282 5741 736 4268 t 0 0 0 595 435 241 154 141 121 109 166 150 120 215 161 585 503

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m7_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m7_shift0 (oligos_6nt_mkv4_m7)
; oligos_6nt_mkv4_m7; m=0 (reference); ncol1=10; shift=0; ncol=10; mmACTGCAcm ; Alignment reference a 280 224 857 0 0 11 0 847 189 254 c 248 345 0 857 0 7 838 3 344 244 g 195 114 0 0 0 838 12 0 175 170 t 134 174 0 0 857 1 7 7 149 189

oligos_6nt_mkv4_m7_shift0 (oligos_6nt_mkv4_m7)
; oligos_6nt_mkv4_m7 versus oligos_6nt_mkv4_m7; m=1/1; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; mmACTGCAcm ; cor=; Ncor= a 280 224 857 0 0 11 0 847 189 254 c 248 345 0 857 0 7 838 3 344 244 g 195 114 0 0 0 838 12 0 175 170 t 134 174 0 0 857 1 7 7 149 189

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m10_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m10_shift0 (oligos_7nt_mkv5_m10)
; oligos_7nt_mkv5_m10; m=0 (reference); ncol1=11; shift=0; ncol=11; rrCAGAGACrg ; Alignment reference a 510 713 119 1668 35 1626 74 1599 123 732 432 c 439 367 1422 60 33 93 37 80 1348 348 434 g 525 496 207 55 1666 59 1613 85 267 487 665 t 329 227 55 20 69 25 79 39 65 236 272

oligos_7nt_mkv5_m10_shift0 (oligos_7nt_mkv5_m10)
; oligos_7nt_mkv5_m10 versus oligos_7nt_mkv5_m10; m=1/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; rrCAGAGACrg ; cor=; Ncor= a 510 713 119 1668 35 1626 74 1599 123 732 432 c 439 367 1422 60 33 93 37 80 1348 348 434 g 525 496 207 55 1666 59 1613 85 267 487 665 t 329 227 55 20 69 25 79 39 65 236 272

oligos_7nt_mkv5_m7_rc_shift1 (oligos_7nt_mkv5_m7_rc)
; oligos_7nt_mkv5_m10 versus oligos_7nt_mkv5_m7_rc; m=2/2; ncol2=14; w=0; offset=1; strand=R; shift=1; score=0.470951; -aGAGAGArAG ; cor=; Ncor= a 0 4174 1102 5431 368 5778 381 5780 2077 5753 383 c 0 719 524 332 147 286 76 293 156 244 136 g 0 960 4387 444 5779 243 5870 266 4049 301 5809 t 0 595 435 241 154 141 121 109 166 150 120

One-to-n matrix alignment; reference matrix: positions_6nt_m5_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_6nt_m5_shift1 (positions_6nt_m5)
; positions_6nt_m5; m=0 (reference); ncol1=24; shift=1; ncol=25; -gtGTGTGTGTGTGTGTGTGTGtgt ; Alignment reference a 0 1346 1032 551 401 483 289 514 399 451 199 332 158 302 182 1358 236 377 309 443 396 617 1189 1451 1278 c 0 1227 1705 484 910 233 703 215 2098 217 435 134 432 125 324 309 401 164 435 171 606 309 1478 812 1562 g 0 7409 910 9651 267 10093 179 10142 222 10215 79 10428 65 10505 130 8894 160 10240 223 10110 367 9570 1033 7325 1580 t 0 1092 7427 388 9496 265 9903 203 8355 191 10361 180 10419 142 10438 513 10277 293 10107 350 9705 578 7374 1486 6654

positions_6nt_m5_shift1 (positions_6nt_m5)
; positions_6nt_m5 versus positions_6nt_m5; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -gtGTGTGTGTGTGTGTGTGTGtgt ; cor=; Ncor= a 0 1346 1032 551 401 483 289 514 399 451 199 332 158 302 182 1358 236 377 309 443 396 617 1189 1451 1278 c 0 1227 1705 484 910 233 703 215 2098 217 435 134 432 125 324 309 401 164 435 171 606 309 1478 812 1562 g 0 7409 910 9651 267 10093 179 10142 222 10215 79 10428 65 10505 130 8894 160 10240 223 10110 367 9570 1033 7325 1580 t 0 1092 7427 388 9496 265 9903 203 8355 191 10361 180 10419 142 10438 513 10277 293 10107 350 9705 578 7374 1486 6654

positions_7nt_m5_rc_shift1 (positions_7nt_m5_rc)
; positions_6nt_m5 versus positions_7nt_m5_rc; m=2/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.993497; -gtGTGTGTGTGTGTGTGTGTGtgt ; cor=; Ncor= a 0 1250 994 561 341 493 287 1613 213 397 172 334 119 291 341 371 214 368 280 461 360 618 826 1388 1191 c 0 1186 1587 433 624 243 588 371 397 146 427 107 288 103 1667 160 370 137 524 163 587 309 1405 770 1482 g 0 7163 872 9224 281 9623 225 8200 138 9935 76 10047 63 10067 195 9846 124 9804 184 9612 358 9032 1361 7006 1519 t 0 1002 7148 383 9355 242 9501 417 9853 123 9926 113 10131 140 8398 224 9893 292 9613 365 9296 642 7009 1437 6409

positions_6nt_m4_rc_shift1 (positions_6nt_m4_rc)
; positions_6nt_m5 versus positions_6nt_m4_rc; m=3/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.993427; -gtGTGTGTGTGTGTGTGTGTGygt ; cor=; Ncor= a 0 762 646 603 213 196 96 195 83 456 63 157 51 129 66 913 91 152 91 178 111 269 364 834 636 c 0 740 871 744 264 142 188 80 170 205 128 65 125 50 120 154 152 72 194 64 281 117 1750 462 917 g 0 4259 642 4643 168 5939 80 6014 65 5114 66 6086 32 6144 58 5055 64 6040 77 6019 127 5818 425 4330 793 t 0 621 4223 392 5737 105 6018 93 6064 607 6125 74 6174 59 6138 260 6075 118 6020 121 5863 178 3843 756 4036

positions_7nt_m6_rc_shift1 (positions_7nt_m6_rc)
; positions_6nt_m5 versus positions_7nt_m6_rc; m=4/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.99287; -gtGTGTGTGTGTGTGTGTGTGtgt ; cor=; Ncor= a 0 1314 1108 658 508 613 555 529 276 426 168 364 178 1359 192 368 226 377 261 446 417 657 1186 1422 1250 c 0 1321 2020 523 984 308 2529 270 577 151 527 144 329 263 351 141 309 140 451 175 604 291 1492 809 1571 g 0 7534 1002 9649 365 10096 354 10279 137 10526 78 10687 120 9276 117 10610 121 10549 168 10366 336 9778 1019 7570 1570 t 0 1149 7188 488 9461 301 7880 240 10328 215 10545 123 10691 420 10658 199 10662 252 10438 331 9961 592 7621 1517 6927

positions_7nt_m10_rc_shift1 (positions_7nt_m10_rc)
; positions_6nt_m5 versus positions_7nt_m10_rc; m=5/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.990757; -GtGTGTGTGTGTGTGTGTGTGTgt ; cor=; Ncor= a 0 1221 1023 527 405 507 468 450 219 349 128 317 146 1478 154 334 249 368 304 438 1091 980 932 1407 1333 c 0 1193 1920 393 861 230 2409 206 485 127 434 115 277 269 305 113 332 115 481 212 1255 509 1290 838 1602 g 0 7628 898 9811 279 10121 280 10266 108 10453 63 10565 121 8961 100 10487 139 10395 213 10095 752 8605 1069 7310 1631 t 0 1077 7278 388 9574 261 7962 197 10307 190 10494 122 10575 411 10560 185 10399 241 10121 374 8021 1025 7828 1564 6553

positions_7nt_m8_rc_shift1 (positions_7nt_m8_rc)
; positions_6nt_m5 versus positions_7nt_m8_rc; m=6/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.988383; -gtGTGTGTGTGTGTGTGTGTGTgt ; cor=; Ncor= a 0 1444 1222 1288 535 510 246 411 166 389 172 426 358 318 186 312 216 380 313 874 626 973 892 1632 1388 c 0 1459 1853 1524 768 336 457 179 498 140 418 144 1997 165 363 142 547 183 542 484 976 688 1273 1023 1814 g 0 8000 1299 8529 466 11129 175 11460 86 11558 62 11510 203 11550 81 11502 121 11271 382 8585 957 9320 1241 7685 1858 t 0 1326 7855 888 10460 254 11351 179 11479 142 11577 149 9671 196 11599 273 11345 395 10992 2286 9670 1248 8823 1889 7169

positions_6nt_m6_rc_shift1 (positions_6nt_m6_rc)
; positions_6nt_m5 versus positions_6nt_m6_rc; m=7/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.986849; -gtGTGTGTGTGTGTGTGTGTktgt ; cor=; Ncor= a 0 1141 950 717 498 618 395 780 130 292 75 229 101 1501 114 239 123 247 122 347 283 875 740 1210 1094 c 0 1161 1492 605 871 391 690 410 210 131 182 86 192 236 209 102 223 100 302 144 454 438 1147 919 1261 g 0 6364 924 7757 467 8244 354 7685 119 9116 51 9244 98 7597 92 9166 88 9073 157 8796 453 5914 1781 5883 1600 t 0 997 6297 584 7827 410 8224 788 9204 124 9355 104 9272 329 9248 156 9229 243 9082 376 8473 2436 5995 1651 5708

positions_6nt_m9_rc_shift1 (positions_6nt_m9_rc)
; positions_6nt_m5 versus positions_6nt_m9_rc; m=8/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.978278; -gtGTGTGTGTGTGTGTGTgtGtgt ; cor=; Ncor= a 0 1244 1142 820 1256 194 189 204 139 193 331 227 127 141 140 223 178 300 631 932 869 895 1035 1390 1328 c 0 1023 1499 660 1051 129 337 54 217 60 1952 105 195 49 300 61 256 151 1076 540 1014 718 1117 953 1480 g 0 6677 1066 7825 511 9519 85 9636 49 9623 131 9499 64 9641 71 9522 169 9166 1286 6536 1877 7182 1310 5987 1768 t 0 1014 6251 653 7140 116 9347 64 9553 82 7544 127 9572 127 9447 152 9355 341 6965 1950 6198 1163 6496 1628 5382

positions_6nt_m8_rc_shift1 (positions_6nt_m8_rc)
; positions_6nt_m5 versus positions_6nt_m8_rc; m=9/33; ncol2=23; w=0; offset=0; strand=R; shift=1; score=0.946007; -gtGTGTGTGTGTGTGTGTGTGtg- ; cor=; Ncor= a 0 2027 1903 1470 1957 604 497 484 365 524 569 504 339 344 386 416 450 498 1550 1248 1274 1522 1827 2108 0 c 0 1746 2595 1257 1950 373 939 152 663 182 2809 217 484 129 687 144 545 238 1753 614 1626 934 2346 1392 0 g 0 10165 1687 11817 975 14341 246 14838 109 14777 257 14687 93 14960 95 14844 217 14478 861 12569 1235 11540 2041 9716 0 t 0 1738 9491 1132 10794 358 13994 202 14539 193 12041 268 14760 243 14508 272 14464 462 11512 1245 11541 1680 9462 2460 0

positions_6nt_m3_shift1 (positions_6nt_m3)
; positions_6nt_m5 versus positions_6nt_m3; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.917302; -gtGtGTGTGTGyGTGTGtkkkkkk ; cor=; Ncor= a 0 706 680 497 902 143 113 101 66 117 72 126 244 108 119 146 143 227 472 711 663 797 820 1016 1069 c 0 591 913 397 618 94 134 36 175 33 117 58 1474 68 153 60 282 133 842 437 698 669 700 902 953 g 0 3680 646 4351 350 5253 63 5414 32 5399 30 5324 123 5316 75 5255 126 4915 1228 2606 1991 2070 2228 2242 1569 t 0 625 3363 357 3732 112 5292 51 5329 53 5383 94 3761 110 5255 141 5051 327 3060 1848 2250 2066 1854 1442 2011

positions_7nt_m7_rc_shift0 (positions_7nt_m7_rc)
; positions_6nt_m5 versus positions_7nt_m7_rc; m=11/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.913961; tgtGTGTGTGTGTGTGTGTGTGtg- ; cor=; Ncor= a 1231 1313 959 554 331 436 187 401 199 817 182 314 135 304 145 334 203 1521 269 448 449 777 941 1369 0 c 1916 1206 1469 450 568 204 436 152 397 326 293 137 253 101 244 113 357 318 489 227 828 404 1512 847 0 g 1302 7165 1248 9398 253 9946 141 10080 137 8742 120 10208 66 10219 95 10138 164 8324 284 9700 527 8738 1199 7015 0 t 6347 1112 7120 394 9644 210 10032 163 10063 911 10201 137 10342 172 10312 211 10072 633 9754 421 8992 877 7144 1565 0

dyads_m8_rc_shift0 (dyads_m8_rc)
; positions_6nt_m5 versus dyads_m8_rc; m=12/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.912591; tGyGTGTGTGTGTGTGTGTGTGtG- ; cor=; Ncor= a 988 1049 644 404 281 324 145 289 144 1269 131 238 112 194 102 230 146 276 353 301 307 396 774 1010 0 c 1578 909 2296 346 518 155 430 135 327 255 292 103 168 59 258 66 279 115 1646 156 524 212 1258 588 0 g 944 5955 537 7677 211 8040 91 8166 96 6905 80 8262 52 8374 44 8298 71 8105 259 7977 263 7630 782 6008 0 t 5206 803 5239 289 7706 197 8050 126 8149 287 8213 113 8384 89 8312 122 8220 220 6458 282 7622 478 5902 1110 0

positions_7nt_m4_rc_shift0 (positions_7nt_m4_rc)
; positions_6nt_m5 versus positions_7nt_m4_rc; m=13/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.912568; tgtGTGTGTGTGTGTGTGTGTGtg- ; cor=; Ncor= a 1233 1297 1386 528 408 419 221 364 172 386 170 683 161 267 174 310 209 375 511 491 441 579 971 1306 0 c 1807 1159 1410 418 542 189 395 129 367 149 384 285 230 110 350 102 362 160 2101 245 670 306 1594 789 0 g 1221 6838 792 8981 245 9472 132 9630 72 9579 113 8427 133 9771 81 9691 123 9474 394 9162 397 8807 1027 6774 0 t 6019 986 6692 353 9085 200 9532 157 9669 166 9613 885 9756 132 9675 177 9586 271 7274 382 8772 588 6688 1411 0

positions_6nt_m7_rc_shift2 (positions_6nt_m7_rc)
; positions_6nt_m5 versus positions_6nt_m7_rc; m=14/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.912174; --tGTGTGTGTGTGTGTGTGTGtGt ; cor=; Ncor= a 0 0 1062 1139 443 454 215 420 213 1568 170 308 147 305 157 300 422 371 346 376 454 545 1221 1008 1222 c 0 0 1569 929 638 266 464 187 432 337 321 122 358 82 271 101 1757 187 466 144 685 240 1326 586 1507 g 0 0 1035 7623 359 9528 164 9726 148 8217 116 9958 72 10013 69 9933 237 9672 182 9649 280 9231 861 7767 1373 t 0 0 6838 813 9064 256 9661 171 9711 382 9897 116 9927 104 10007 170 8088 274 9510 335 9085 488 7096 1143 6402

dyads_m1_rc_shift0 (dyads_m1_rc)
; positions_6nt_m5 versus dyads_m1_rc; m=15/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.911728; tGtGTGTGTGTGTGTGTGTGTgtg- ; cor=; Ncor= a 1002 1034 1501 387 306 291 196 269 114 261 120 236 111 209 270 239 136 254 218 329 304 1781 800 1127 0 c 1428 923 1040 286 452 110 335 103 242 85 347 63 223 70 1314 112 278 109 422 174 550 394 1153 699 0 g 961 6084 540 7832 172 8254 96 8296 47 8335 46 8404 42 8405 134 8271 99 8198 179 7980 362 5772 1069 5685 0 t 5400 750 5710 286 7861 136 8164 123 8388 110 8278 88 8415 107 7073 169 8278 230 7972 308 7575 844 5769 1280 0

positions_7nt_m9_rc_shift0 (positions_7nt_m9_rc)
; positions_6nt_m5 versus positions_7nt_m9_rc; m=16/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.910175; tGTGTGTGTGTGTGTGTGTGTGtg- ; cor=; Ncor= a 1216 1316 715 783 406 1897 235 393 183 379 131 290 372 339 215 319 301 392 352 500 1229 1082 1219 1492 0 c 1899 1199 1124 580 684 490 445 162 446 113 311 114 1786 152 319 121 508 126 546 258 1409 564 1628 933 0 g 1299 7853 718 9602 363 8573 183 10752 97 10823 59 10909 170 10756 82 10771 118 10624 268 10214 830 8663 1385 7348 0 t 7027 1073 8884 476 9988 481 10578 134 10715 126 10940 128 9113 194 10825 230 10514 299 10275 469 7973 1132 7209 1668 0

positions_7nt_m1_rc_shift2 (positions_7nt_m1_rc)
; positions_6nt_m5 versus positions_7nt_m1_rc; m=17/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.909991; --tGTGTGTGTGTGTGTGTGTGTgt ; cor=; Ncor= a 0 0 835 882 469 306 163 307 147 1313 120 219 92 212 76 195 277 258 149 227 185 338 296 741 717 c 0 0 1236 789 702 195 364 142 336 247 224 102 258 48 194 64 1329 135 291 101 426 146 506 367 1070 g 0 0 847 6045 381 7681 128 7824 115 6542 74 7992 50 8052 33 8024 162 7821 93 7819 142 7519 416 5354 1145 t 0 0 5474 676 6840 210 7737 119 7794 290 7974 79 7992 80 8089 109 6624 178 7859 245 7639 389 7174 1930 5460

positions_7nt_m3_shift0 (positions_7nt_m3)
; positions_6nt_m5 versus positions_7nt_m3; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.909078; tGTGTGTGTGTGTGTGTGTGTgtg- ; cor=; Ncor= a 888 963 461 536 226 1564 180 293 127 244 96 220 105 246 267 248 144 260 184 326 294 1779 767 1109 0 c 1351 874 789 386 460 344 358 128 215 77 271 55 232 87 1392 111 276 102 429 167 498 385 1201 700 0 g 905 6174 469 7546 225 6546 139 8227 64 8363 43 8415 47 8319 124 8240 82 8182 167 7963 345 5777 1038 5670 0 t 5629 762 7054 305 7862 319 8096 125 8367 89 8363 83 8389 121 6990 174 8271 229 7993 317 7636 832 5767 1294 0

positions_7nt_m2_rc_shift0 (positions_7nt_m2_rc)
; positions_6nt_m5 versus positions_7nt_m2_rc; m=19/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.909032; tGTGTGTGTGTGTGTGTGTGTgtg- ; cor=; Ncor= a 894 970 487 564 248 1509 149 276 111 260 84 215 249 231 126 208 132 256 144 323 247 782 738 1048 0 c 1394 902 772 424 457 379 335 105 320 82 212 68 1356 100 243 80 342 101 361 164 486 357 1108 759 0 g 947 6171 492 7523 255 6600 130 8357 61 8409 35 8459 116 8362 64 8364 59 8219 166 7949 392 5719 1162 5649 0 t 5592 784 7076 316 7867 339 8213 89 8335 76 8496 85 7106 134 8394 175 8294 251 8156 391 7702 1969 5819 1371 0

positions_6nt_m2_rc_shift0 (positions_6nt_m2_rc)
; positions_6nt_m5 versus positions_6nt_m2_rc; m=20/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.908298; tgtGTGTGTGTGTGTGTGTGTGtg- ; cor=; Ncor= a 1111 1256 1027 1006 336 335 138 322 130 1646 160 286 107 228 68 251 154 683 379 627 540 904 973 1339 0 c 1827 1211 1449 814 422 201 272 128 270 304 255 102 181 87 181 80 260 322 633 409 747 542 1442 900 0 g 1360 6633 1249 7183 313 9532 107 9678 117 7946 85 9760 60 9816 64 9728 189 7492 566 8487 663 7674 1249 6338 0 t 5953 1151 6526 1248 9180 183 9734 123 9734 355 9751 103 9903 120 9938 192 9648 1754 8673 728 8301 1131 6587 1674 0

positions_6nt_m10_rc_shift2 (positions_6nt_m10_rc)
; positions_6nt_m5 versus positions_6nt_m10_rc; m=21/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.903768; --tGTGTGTGTGTGTGTGTGTktgt ; cor=; Ncor= a 0 0 785 908 478 506 355 625 113 208 49 168 68 1366 81 175 86 169 68 256 193 665 553 860 902 c 0 0 1260 756 755 375 518 335 164 90 130 66 140 186 142 74 169 69 206 99 346 352 841 678 984 g 0 0 875 5653 483 6829 333 6383 105 7675 40 7756 67 6248 72 7720 78 7668 106 7423 329 4819 1675 4643 1435 t 0 0 5158 761 6362 368 6872 735 7696 105 7859 88 7803 278 7783 109 7745 172 7698 300 7210 2242 5009 1897 4757

dyads_m10_rc_shift5 (dyads_m10_rc)
; positions_6nt_m5 versus dyads_m10_rc; m=22/33; ncol2=18; w=0; offset=4; strand=R; shift=5; score=0.739993; -----GTGyGTGTGTGTGTGTGT-- ; cor=; Ncor= a 0 0 0 0 0 1123 902 380 480 221 201 229 125 245 110 261 88 252 141 2074 220 1055 739 0 0 c 0 0 0 0 0 877 1578 284 2725 180 355 87 269 69 179 64 171 86 208 286 342 600 1101 0 0 g 0 0 0 0 0 7303 744 9327 320 9671 113 9764 42 9807 58 9760 75 9753 129 7314 282 7513 1135 0 0 t 0 0 0 0 0 910 6989 222 6688 141 9544 133 9777 92 9866 128 9879 122 9735 539 9369 1045 7238 0 0

oligos_7nt_mkv5_m8_rc_shift7 (oligos_7nt_mkv5_m8_rc)
; positions_6nt_m5 versus oligos_7nt_mkv5_m8_rc; m=23/33; ncol2=16; w=0; offset=6; strand=R; shift=7; score=0.659423; -------GTGTGTGTGTGTGTGT-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1224 929 839 201 176 67 180 73 1978 55 133 73 155 65 855 646 0 0 c 0 0 0 0 0 0 0 1137 1414 1684 216 131 141 98 144 261 127 82 126 68 157 434 1252 0 0 g 0 0 0 0 0 0 0 7805 1031 8182 199 10841 68 10901 61 8641 55 10953 81 10941 72 9006 930 0 0 t 0 0 0 0 0 0 0 1079 7871 540 10629 97 10969 66 10967 365 11008 77 10965 81 10951 950 8417 0 0

oligos_6nt_mkv4_m5_shift1 (oligos_6nt_mkv4_m5)
; positions_6nt_m5 versus oligos_6nt_mkv4_m5; m=24/33; ncol2=16; w=0; offset=0; strand=D; shift=1; score=0.613865; -gtsTGTGyGTGTsTgt-------- ; cor=; Ncor= a 0 214 180 62 30 40 21 22 21 20 16 41 12 98 13 202 129 0 0 0 0 0 0 0 0 c 0 294 260 792 62 50 39 43 1077 48 32 62 38 611 57 217 297 0 0 0 0 0 0 0 0 g 0 895 280 760 38 1580 14 1604 24 1593 23 1556 28 898 67 1041 211 0 0 0 0 0 0 0 0 t 0 294 977 83 1567 27 1623 28 575 36 1626 38 1619 90 1560 237 1060 0 0 0 0 0 0 0 0

oligos_6nt_mkv4_m2_rc_shift8 (oligos_6nt_mkv4_m2_rc)
; positions_6nt_m5 versus oligos_6nt_mkv4_m2_rc; m=25/33; ncol2=16; w=0; offset=7; strand=R; shift=8; score=0.601873; --------tgkGTGTrTGTGwGtg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 421 362 158 100 83 79 61 1618 50 69 71 78 840 208 394 410 0 c 0 0 0 0 0 0 0 0 432 382 215 95 70 38 26 41 50 23 68 33 231 117 379 219 0 g 0 0 0 0 0 0 0 0 465 1338 1092 2225 94 2331 75 757 70 2376 82 2340 137 1970 351 1513 0 t 0 0 0 0 0 0 0 0 1178 414 1031 76 2249 48 2334 80 2326 28 2275 45 1288 201 1372 354 0

dyads_m7_rc_shift5 (dyads_m7_rc)
; positions_6nt_m5 versus dyads_m7_rc; m=26/33; ncol2=15; w=0; offset=4; strand=R; shift=5; score=0.564339; -----gtGyGTGTGTGTktg----- ; cor=; Ncor= a 0 0 0 0 0 517 558 135 252 91 114 108 66 93 41 140 90 360 465 523 0 0 0 0 0 c 0 0 0 0 0 435 757 151 2268 81 139 38 113 52 94 64 100 139 495 453 0 0 0 0 0 g 0 0 0 0 0 2402 446 3437 176 3585 79 3616 30 3629 51 3543 97 1297 728 2128 0 0 0 0 0 t 0 0 0 0 0 496 2089 127 1154 93 3518 88 3641 76 3664 103 3563 2054 2162 746 0 0 0 0 0

positions_6nt_m1_rc_shift6 (positions_6nt_m1_rc)
; positions_6nt_m5 versus positions_6nt_m1_rc; m=27/33; ncol2=15; w=0; offset=5; strand=R; shift=6; score=0.562444; ------tgyGTGTGyGTGTgt---- ; cor=; Ncor= a 0 0 0 0 0 0 601 605 225 67 97 116 76 116 173 108 91 120 116 572 350 0 0 0 0 c 0 0 0 0 0 0 858 565 2345 89 179 54 193 61 2125 74 121 63 179 284 560 0 0 0 0 g 0 0 0 0 0 0 601 2074 237 3576 91 3556 25 3555 73 3551 54 3524 54 2532 435 0 0 0 0 t 0 0 0 0 0 0 1745 561 998 73 3438 79 3511 73 1434 72 3539 98 3456 417 2460 0 0 0 0

oligos_7nt_mkv5_m4_rc_shift9 (oligos_7nt_mkv5_m4_rc)
; positions_6nt_m5 versus oligos_7nt_mkv5_m4_rc; m=28/33; ncol2=13; w=0; offset=8; strand=R; shift=9; score=0.524704; ---------gtGTGTgTGTGtg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1279 913 50 29 50 48 740 84 53 42 83 726 1242 0 0 0 c 0 0 0 0 0 0 0 0 0 1022 1381 57 101 17 96 257 67 42 67 47 1558 663 0 0 0 g 0 0 0 0 0 0 0 0 0 5541 804 8808 48 8906 99 5812 265 8848 44 8776 794 5506 0 0 0 t 0 0 0 0 0 0 0 0 0 1185 5929 112 8849 54 8784 2218 8611 84 8874 121 5949 1616 0 0 0

dyads_m4_rc_shift5 (dyads_m4_rc)
; positions_6nt_m5 versus dyads_m4_rc; m=29/33; ncol2=13; w=0; offset=4; strand=R; shift=5; score=0.486102; -----GtGyGTGTGTktg------- ; cor=; Ncor= a 0 0 0 0 0 355 343 33 99 27 36 31 12 42 33 142 267 369 0 0 0 0 0 0 0 c 0 0 0 0 0 304 608 51 2134 21 45 18 53 25 60 68 403 346 0 0 0 0 0 0 0 g 0 0 0 0 0 2240 251 3147 50 3190 33 3160 14 3156 52 1096 667 1862 0 0 0 0 0 0 0 t 0 0 0 0 0 370 2067 38 986 31 3155 60 3190 46 3124 1963 1932 692 0 0 0 0 0 0 0

dyads_m9_rc_shift10 (dyads_m9_rc)
; positions_6nt_m5 versus dyads_m9_rc; m=30/33; ncol2=14; w=0; offset=9; strand=R; shift=10; score=0.485395; ----------tgkGTGTGTGTTtg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 431 373 145 79 87 64 61 91 50 108 86 176 374 356 0 c 0 0 0 0 0 0 0 0 0 0 441 464 152 70 30 32 47 48 57 43 67 63 345 367 0 g 0 0 0 0 0 0 0 0 0 0 555 1329 1505 2482 99 2538 87 2487 56 2450 94 478 637 1305 0 t 0 0 0 0 0 0 0 0 0 0 1266 527 891 62 2477 59 2498 67 2530 92 2446 1976 1337 665 0

oligos_7nt_mkv5_m5_rc_shift2 (oligos_7nt_mkv5_m5_rc)
; positions_6nt_m5 versus oligos_7nt_mkv5_m5_rc; m=31/33; ncol2=14; w=0; offset=1; strand=R; shift=2; score=0.48472; --tgkGTGTGCGTGtg--------- ; cor=; Ncor= a 0 0 501 418 166 38 69 62 55 56 82 45 114 206 388 389 0 0 0 0 0 0 0 0 0 c 0 0 545 526 155 67 60 21 64 40 2153 48 87 123 595 280 0 0 0 0 0 0 0 0 0 g 0 0 628 1283 1562 2700 70 2733 45 2718 96 2713 95 2317 359 1722 0 0 0 0 0 0 0 0 0 t 0 0 1177 624 968 46 2652 35 2687 37 520 45 2555 205 1509 460 0 0 0 0 0 0 0 0 0

dyads_m6_rc_shift11 (dyads_m6_rc)
; positions_6nt_m5 versus dyads_m6_rc; m=32/33; ncol2=13; w=0; offset=10; strand=R; shift=11; score=0.469681; -----------gtrTGTGTGTktg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 355 344 1805 52 47 18 44 9 38 44 144 270 345 0 c 0 0 0 0 0 0 0 0 0 0 0 351 415 98 30 24 19 21 30 15 33 48 362 346 0 g 0 0 0 0 0 0 0 0 0 0 0 1939 432 987 41 2937 28 2942 17 2945 41 936 619 1706 0 t 0 0 0 0 0 0 0 0 0 0 0 393 1847 148 2915 30 2973 31 2982 40 2920 1910 1787 641 0

oligos_7nt_mkv5_m9_rc_shift7 (oligos_7nt_mkv5_m9_rc)
; positions_6nt_m5 versus oligos_7nt_mkv5_m9_rc; m=33/33; ncol2=13; w=0; offset=6; strand=R; shift=7; score=0.423581; -------ktTTGTGTsTGtg----- ; cor=; Ncor= a 0 0 0 0 0 0 0 270 323 42 35 26 13 49 15 96 71 140 218 284 0 0 0 0 0 c 0 0 0 0 0 0 0 324 334 71 49 57 39 68 34 1213 111 183 389 315 0 0 0 0 0 g 0 0 0 0 0 0 0 796 432 298 36 1761 23 1715 44 472 176 1425 301 845 0 0 0 0 0 t 0 0 0 0 0 0 0 494 795 1473 1764 40 1809 52 1791 103 1526 136 976 440 0 0 0 0 0

One-to-n matrix alignment; reference matrix: dyads_m7_shift9 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m7_shift9 (dyads_m7)
; dyads_m7; m=0 (reference); ncol1=15; shift=9; ncol=24; ---------camACACACACrCac ; Alignment reference a 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 c 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 g 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 t 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517

dyads_m7_shift9 (dyads_m7)
; dyads_m7 versus dyads_m7; m=1/33; ncol2=15; w=0; offset=0; strand=D; shift=9; score= 1; ---------camACACACACrCac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 c 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 g 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 t 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517

dyads_m9_shift9 (dyads_m9)
; dyads_m7 versus dyads_m9; m=2/33; ncol2=14; w=0; offset=0; strand=D; shift=9; score=0.867024; ---------caAACACACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 c 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 g 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 t 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0

oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)
; dyads_m7 versus oligos_7nt_mkv5_m8; m=3/33; ncol2=16; w=-1; offset=-1; strand=D; shift=8; score=0.826817; --------ACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224

dyads_m4_shift11 (dyads_m4)
; dyads_m7 versus dyads_m4; m=4/33; ncol2=13; w=0; offset=2; strand=D; shift=11; score=0.793844; -----------camACACACrCaC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 c 0 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 g 0 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 t 0 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355

dyads_m6_shift9 (dyads_m6)
; dyads_m7 versus dyads_m6; m=5/33; ncol2=13; w=0; offset=0; strand=D; shift=9; score=0.786561; ---------camACACACAyac-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 c 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 g 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 t 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0

oligos_7nt_mkv5_m4_shift11 (oligos_7nt_mkv5_m4)
; dyads_m7 versus oligos_7nt_mkv5_m4; m=6/33; ncol2=13; w=0; offset=2; strand=D; shift=11; score=0.780174; -----------caCACAcACACac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 c 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 g 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 t 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279

dyads_m10_shift6 (dyads_m10)
; dyads_m7 versus dyads_m10; m=7/33; ncol2=18; w=-3; offset=-3; strand=D; shift=6; score=0.771763; ------ACACACACACACACrCAC ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123

oligos_6nt_mkv4_m5_rc_shift8 (oligos_6nt_mkv4_m5_rc)
; dyads_m7 versus oligos_6nt_mkv4_m5_rc; m=8/33; ncol2=16; w=-1; offset=-1; strand=R; shift=8; score=0.767286; --------acAsACACrCACAsac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 c 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 g 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 t 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214

oligos_6nt_mkv4_m2_shift9 (oligos_6nt_mkv4_m2)
; dyads_m7 versus oligos_6nt_mkv4_m2; m=9/33; ncol2=16; w=0; offset=0; strand=D; shift=9; score=0.765845; ---------caCwCACAyACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 c 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 g 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 t 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362

positions_6nt_m1_shift8 (positions_6nt_m1)
; dyads_m7 versus positions_6nt_m1; m=10/33; ncol2=15; w=-1; offset=-1; strand=D; shift=8; score=0.764421; --------acACACrCACACrca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 c 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 g 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 t 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0

oligos_7nt_mkv5_m5_shift9 (oligos_7nt_mkv5_m5)
; dyads_m7 versus oligos_7nt_mkv5_m5; m=11/33; ncol2=14; w=0; offset=0; strand=D; shift=9; score=0.746311; ---------caCACGCACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 c 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 g 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 t 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0

oligos_7nt_mkv5_m9_shift9 (oligos_7nt_mkv5_m9)
; dyads_m7 versus oligos_7nt_mkv5_m9; m=12/33; ncol2=13; w=0; offset=0; strand=D; shift=9; score=0.634936; ---------caCAsACACAAam-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 c 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 g 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 t 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0

positions_6nt_m8_shift7 (positions_6nt_m8)
; dyads_m7 versus positions_6nt_m8; m=13/33; ncol2=23; w=-2; offset=-2; strand=D; shift=7; score=0.597214; -------caCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 c 0 0 0 0 0 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 g 0 0 0 0 0 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 t 0 0 0 0 0 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484

positions_7nt_m2_shift9 (positions_7nt_m2)
; dyads_m7 versus positions_7nt_m2; m=14/33; ncol2=24; w=0; offset=0; strand=D; shift=9; score=0.582325; ---------cacACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 c 0 0 0 0 0 0 0 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 g 0 0 0 0 0 0 0 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 t 0 0 0 0 0 0 0 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260

positions_6nt_m9_shift6 (positions_6nt_m9)
; dyads_m7 versus positions_6nt_m9; m=15/33; ncol2=24; w=-3; offset=-3; strand=D; shift=6; score=0.580494; ------acaCacACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 c 0 0 0 0 0 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 g 0 0 0 0 0 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 t 0 0 0 0 0 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204

positions_7nt_m9_shift9 (positions_7nt_m9)
; dyads_m7 versus positions_7nt_m9; m=16/33; ncol2=24; w=0; offset=0; strand=D; shift=9; score=0.570422; ---------caCACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 c 0 0 0 0 0 0 0 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 g 0 0 0 0 0 0 0 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 t 0 0 0 0 0 0 0 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379

positions_6nt_m10_shift7 (positions_6nt_m10)
; dyads_m7 versus positions_6nt_m10; m=17/33; ncol2=24; w=-2; offset=-2; strand=D; shift=7; score=0.569813; -------cacamACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 c 0 0 0 0 0 0 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 g 0 0 0 0 0 0 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 t 0 0 0 0 0 0 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208

positions_6nt_m6_shift8 (positions_6nt_m6)
; dyads_m7 versus positions_6nt_m6; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=8; score=0.569307; --------acamACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 c 0 0 0 0 0 0 0 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 g 0 0 0 0 0 0 0 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 t 0 0 0 0 0 0 0 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292

positions_7nt_m8_shift8 (positions_7nt_m8)
; dyads_m7 versus positions_7nt_m8; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=8; score=0.568594; --------acACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 c 0 0 0 0 0 0 0 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 g 0 0 0 0 0 0 0 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 t 0 0 0 0 0 0 0 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389

positions_7nt_m1_shift9 (positions_7nt_m1)
; dyads_m7 versus positions_7nt_m1; m=20/33; ncol2=24; w=0; offset=0; strand=D; shift=9; score=0.567138; ---------cacACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 c 0 0 0 0 0 0 0 0 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 g 0 0 0 0 0 0 0 0 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 t 0 0 0 0 0 0 0 0 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219

positions_7nt_m6_shift2 (positions_7nt_m6)
; dyads_m7 versus positions_7nt_m6; m=21/33; ncol2=24; w=-7; offset=-7; strand=D; shift=2; score=0.566228; --acaCACACACACACACACACAC ; cor=; Ncor= a 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 c 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 g 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 t 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658

positions_7nt_m10_shift2 (positions_7nt_m10)
; dyads_m7 versus positions_7nt_m10; m=22/33; ncol2=24; w=-7; offset=-7; strand=D; shift=2; score=0.565589; --acACACACACACACACACACAC ; cor=; Ncor= a 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 c 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 g 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 t 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527

positions_6nt_m2_shift5 (positions_6nt_m2)
; dyads_m7 versus positions_6nt_m2; m=23/33; ncol2=24; w=-4; offset=-4; strand=D; shift=5; score=0.564635; -----caCACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 c 0 0 0 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 g 0 0 0 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 t 0 0 0 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335

positions_6nt_m5_rc_shift4 (positions_6nt_m5_rc)
; dyads_m7 versus positions_6nt_m5_rc; m=24/33; ncol2=24; w=-5; offset=-5; strand=R; shift=4; score=0.564339; ----acaCACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 c 0 0 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 g 0 0 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 t 0 0 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483

dyads_m1_shift9 (dyads_m1)
; dyads_m7 versus dyads_m1; m=25/33; ncol2=24; w=0; offset=0; strand=D; shift=9; score=0.563533; ---------cacACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 c 0 0 0 0 0 0 0 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 g 0 0 0 0 0 0 0 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 t 0 0 0 0 0 0 0 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261

positions_7nt_m3_rc_shift9 (positions_7nt_m3_rc)
; dyads_m7 versus positions_7nt_m3_rc; m=26/33; ncol2=24; w=0; offset=0; strand=R; shift=9; score=0.562944; ---------cacACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 c 0 0 0 0 0 0 0 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 g 0 0 0 0 0 0 0 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 t 0 0 0 0 0 0 0 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244

positions_7nt_m7_shift5 (positions_7nt_m7)
; dyads_m7 versus positions_7nt_m7; m=27/33; ncol2=24; w=-4; offset=-4; strand=D; shift=5; score=0.559271; -----caCACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 c 0 0 0 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 g 0 0 0 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 t 0 0 0 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436

positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)
; dyads_m7 versus positions_6nt_m3_rc; m=28/33; ncol2=24; w=-9; offset=-9; strand=R; shift=0; score=0.559038; mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706

positions_6nt_m4_shift2 (positions_6nt_m4)
; dyads_m7 versus positions_6nt_m4; m=29/33; ncol2=24; w=-7; offset=-7; strand=D; shift=2; score=0.557893; --acrCACACACACACACACACAC ; cor=; Ncor= a 0 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 c 0 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 g 0 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 t 0 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603

positions_7nt_m5_shift8 (positions_7nt_m5)
; dyads_m7 versus positions_7nt_m5; m=30/33; ncol2=24; w=-1; offset=-1; strand=D; shift=8; score=0.557424; --------acaCACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 c 0 0 0 0 0 0 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 g 0 0 0 0 0 0 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 t 0 0 0 0 0 0 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397

positions_6nt_m7_shift7 (positions_6nt_m7)
; dyads_m7 versus positions_6nt_m7; m=31/33; ncol2=24; w=-2; offset=-2; strand=D; shift=7; score=0.556779; -------caCaCACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 c 0 0 0 0 0 0 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 g 0 0 0 0 0 0 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 t 0 0 0 0 0 0 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568

dyads_m8_shift9 (dyads_m8)
; dyads_m7 versus dyads_m8; m=32/33; ncol2=24; w=0; offset=0; strand=D; shift=9; score=0.556166; ---------CaCACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 c 0 0 0 0 0 0 0 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 g 0 0 0 0 0 0 0 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 t 0 0 0 0 0 0 0 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269

positions_7nt_m4_shift1 (positions_7nt_m4)
; dyads_m7 versus positions_7nt_m4; m=33/33; ncol2=24; w=-8; offset=-8; strand=D; shift=1; score=0.555879; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m6_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m6_shift0 (oligos_6nt_mkv4_m6)
; oligos_6nt_mkv4_m6; m=0 (reference); ncol1=12; shift=0; ncol=12; yyCTTATCagym ; Alignment reference a 258 185 81 30 34 1157 9 27 667 140 266 331 c 411 359 1020 64 33 44 19 1173 127 207 383 328 g 231 277 65 39 16 8 37 9 266 679 226 283 t 339 418 73 1106 1156 30 1174 30 179 213 364 297

oligos_6nt_mkv4_m6_shift0 (oligos_6nt_mkv4_m6)
; oligos_6nt_mkv4_m6 versus oligos_6nt_mkv4_m6; m=1/1; ncol2=12; w=0; offset=0; strand=D; shift=0; score= 1; yyCTTATCagym ; cor=; Ncor= a 258 185 81 30 34 1157 9 27 667 140 266 331 c 411 359 1020 64 33 44 19 1173 127 207 383 328 g 231 277 65 39 16 8 37 9 266 679 226 283 t 339 418 73 1106 1156 30 1174 30 179 213 364 297

One-to-n matrix alignment; reference matrix: dyads_m8_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m8_shift1 (dyads_m8)
; dyads_m8; m=0 (reference); ncol1=24; shift=1; ncol=25; -CaCACACACACACACACACACrCa ; Alignment reference a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988

dyads_m8_shift1 (dyads_m8)
; dyads_m8 versus dyads_m8; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988

positions_7nt_m4_shift1 (positions_7nt_m4)
; dyads_m8 versus positions_7nt_m4; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.996557; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233

positions_7nt_m7_shift1 (positions_7nt_m7)
; dyads_m8 versus positions_7nt_m7; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.994701; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231

positions_6nt_m2_shift1 (positions_6nt_m2)
; dyads_m8 versus positions_6nt_m2; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991818; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111

dyads_m1_shift1 (dyads_m1)
; dyads_m8 versus dyads_m1; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990272; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002

positions_7nt_m9_shift1 (positions_7nt_m9)
; dyads_m8 versus positions_7nt_m9; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987385; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216

positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)
; dyads_m8 versus positions_7nt_m3_rc; m=7/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.986108; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888

positions_7nt_m2_shift1 (positions_7nt_m2)
; dyads_m8 versus positions_7nt_m2; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.985464; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894

positions_7nt_m1_shift1 (positions_7nt_m1)
; dyads_m8 versus positions_7nt_m1; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.98522; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835

positions_6nt_m7_shift1 (positions_6nt_m7)
; dyads_m8 versus positions_6nt_m7; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984395; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062

positions_6nt_m10_shift1 (positions_6nt_m10)
; dyads_m8 versus positions_6nt_m10; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.971999; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785

positions_6nt_m8_shift1 (positions_6nt_m8)
; dyads_m8 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.948915; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0

positions_7nt_m5_shift0 (positions_7nt_m5)
; dyads_m8 versus positions_7nt_m5; m=13/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.912672; acaCACACACACACACACACACac- ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 0 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 0 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 0 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250 0

positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)
; dyads_m8 versus positions_6nt_m5_rc; m=14/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.912591; acaCACACACACACACACACACac- ; cor=; Ncor= a 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 0 c 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 0 g 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 0 t 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346 0

positions_6nt_m4_shift0 (positions_6nt_m4)
; dyads_m8 versus positions_6nt_m4; m=15/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.912271; acrCACACACACACACACACACac- ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 0 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 0 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 0 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762 0

positions_7nt_m6_shift0 (positions_7nt_m6)
; dyads_m8 versus positions_7nt_m6; m=16/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.911584; acaCACACACACACACACACACac- ; cor=; Ncor= a 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 0 c 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 0 g 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 0 t 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314 0

positions_7nt_m10_shift0 (positions_7nt_m10)
; dyads_m8 versus positions_7nt_m10; m=17/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910211; acACACACACACACACACACACaC- ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 0 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 0 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 0 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221 0

positions_7nt_m8_shift0 (positions_7nt_m8)
; dyads_m8 versus positions_7nt_m8; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908447; acACACACACACACACACACACac- ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 0 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 0 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 0 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444 0

positions_6nt_m6_shift0 (positions_6nt_m6)
; dyads_m8 versus positions_6nt_m6; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.906305; acamACACACACACACACACACac- ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 0 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 0 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 0 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141 0

positions_6nt_m9_shift0 (positions_6nt_m9)
; dyads_m8 versus positions_6nt_m9; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.903809; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0

positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)
; dyads_m8 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.852709; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0

dyads_m10_shift6 (dyads_m10)
; dyads_m8 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=5; strand=D; shift=6; score=0.737754; ------ACACACACACACACrCAC- ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0

oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)
; dyads_m8 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=7; strand=D; shift=8; score=0.660292; --------ACACACACACACACAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0

oligos_6nt_mkv4_m2_shift7 (oligos_6nt_mkv4_m2)
; dyads_m8 versus oligos_6nt_mkv4_m2; m=24/33; ncol2=16; w=0; offset=6; strand=D; shift=7; score=0.602003; -------caCwCACAyACACmca-- ; cor=; Ncor= a 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 0 c 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 0 g 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 0 t 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0 0

oligos_6nt_mkv4_m5_rc_shift8 (oligos_6nt_mkv4_m5_rc)
; dyads_m8 versus oligos_6nt_mkv4_m5_rc; m=25/33; ncol2=16; w=0; offset=7; strand=R; shift=8; score=0.596216; --------acAsACACrCACAsac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 c 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 g 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 t 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0

positions_6nt_m1_shift10 (positions_6nt_m1)
; dyads_m8 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=9; strand=D; shift=10; score=0.576769; ----------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601

dyads_m7_shift1 (dyads_m7)
; dyads_m8 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.556166; -camACACACACrCac--------- ; cor=; Ncor= a 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 0 0 c 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 0 0 g 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 0 0 t 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m4_shift9 (oligos_7nt_mkv5_m4)
; dyads_m8 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=8; strand=D; shift=9; score=0.523645; ---------caCACAcACACac--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 0 c 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 0 g 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 0 t 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0 0

oligos_7nt_mkv5_m5_shift1 (oligos_7nt_mkv5_m5)
; dyads_m8 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.498354; -caCACGCACACmca---------- ; cor=; Ncor= a 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 0 0 0 0 0 0 0 c 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 0 0 0 0 0 0 0 g 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 0 0 0 0 0 0 0 t 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0 0 0 0 0 0 0 0

dyads_m9_shift11 (dyads_m9)
; dyads_m8 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=10; strand=D; shift=11; score=0.486624; -----------caAACACACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 c 0 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 g 0 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 t 0 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431

dyads_m6_shift5 (dyads_m6)
; dyads_m8 versus dyads_m6; m=31/33; ncol2=13; w=0; offset=4; strand=D; shift=5; score=0.480159; -----camACACACAyac------- ; cor=; Ncor= a 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 c 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 g 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 t 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0

dyads_m4_shift1 (dyads_m4)
; dyads_m8 versus dyads_m4; m=32/33; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.468881; -camACACACrCaC----------- ; cor=; Ncor= a 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 0 0 0 c 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 0 0 0 g 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 0 0 0 t 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)
; dyads_m8 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.427745; -----------caCAsACACAAam- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0

One-to-n matrix alignment; reference matrix: positions_7nt_m5_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m5_shift1 (positions_7nt_m5)
; positions_7nt_m5; m=0 (reference); ncol1=24; shift=1; ncol=25; -acaCACACACACACACACACACac ; Alignment reference a 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250

positions_7nt_m5_shift1 (positions_7nt_m5)
; positions_7nt_m5 versus positions_7nt_m5; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250

positions_6nt_m5_rc_shift1 (positions_6nt_m5_rc)
; positions_7nt_m5 versus positions_6nt_m5_rc; m=2/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.993497; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 c 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 g 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 t 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346

positions_7nt_m6_shift1 (positions_7nt_m6)
; positions_7nt_m5 versus positions_7nt_m6; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.992659; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 c 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 g 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 t 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314

positions_6nt_m4_shift1 (positions_6nt_m4)
; positions_7nt_m5 versus positions_6nt_m4; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990877; -acrCACACACACACACACACACac ; cor=; Ncor= a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762

positions_7nt_m10_shift1 (positions_7nt_m10)
; positions_7nt_m5 versus positions_7nt_m10; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.99087; -acACACACACACACACACACACaC ; cor=; Ncor= a 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 c 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 g 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 t 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221

positions_6nt_m6_shift1 (positions_6nt_m6)
; positions_7nt_m5 versus positions_6nt_m6; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990352; -acamACACACACACACACACACac ; cor=; Ncor= a 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141

positions_7nt_m8_shift1 (positions_7nt_m8)
; positions_7nt_m5 versus positions_7nt_m8; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.988633; -acACACACACACACACACACACac ; cor=; Ncor= a 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444

positions_6nt_m9_shift1 (positions_6nt_m9)
; positions_7nt_m5 versus positions_6nt_m9; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.979142; -acaCacACACACACACACACACac ; cor=; Ncor= a 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244

positions_6nt_m8_shift2 (positions_6nt_m8)
; positions_7nt_m5 versus positions_6nt_m8; m=9/33; ncol2=23; w=0; offset=1; strand=D; shift=2; score=0.946429; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027

positions_6nt_m3_rc_shift1 (positions_6nt_m3_rc)
; positions_7nt_m5 versus positions_6nt_m3_rc; m=10/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.919201; -mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706

positions_7nt_m9_shift0 (positions_7nt_m9)
; positions_7nt_m5 versus positions_7nt_m9; m=11/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score= 0.9162; caCACACACACACACACACACACa- ; cor=; Ncor= a 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 0 c 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 0 g 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 0 t 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216 0

positions_7nt_m1_shift2 (positions_7nt_m1)
; positions_7nt_m5 versus positions_7nt_m1; m=12/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.915553; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 c 0 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 g 0 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 t 0 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882

dyads_m1_shift2 (dyads_m1)
; positions_7nt_m5 versus dyads_m1; m=13/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.915426; --cacACACACACACACACACACaC ; cor=; Ncor= a 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034

positions_7nt_m2_shift0 (positions_7nt_m2)
; positions_7nt_m5 versus positions_7nt_m2; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.914548; cacACACACACACACACACACACa- ; cor=; Ncor= a 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 0 c 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 0 g 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 0 t 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894 0

positions_6nt_m7_shift2 (positions_6nt_m7)
; positions_7nt_m5 versus positions_6nt_m7; m=15/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.914459; --caCaCACACACACACACACACAC ; cor=; Ncor= a 0 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 c 0 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 g 0 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 t 0 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139

positions_7nt_m7_shift2 (positions_7nt_m7)
; positions_7nt_m5 versus positions_7nt_m7; m=16/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.913937; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313

positions_7nt_m3_rc_shift2 (positions_7nt_m3_rc)
; positions_7nt_m5 versus positions_7nt_m3_rc; m=17/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.913257; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 c 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 g 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 t 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963

positions_7nt_m4_shift2 (positions_7nt_m4)
; positions_7nt_m5 versus positions_7nt_m4; m=18/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.913133; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297

dyads_m8_shift2 (dyads_m8)
; positions_7nt_m5 versus dyads_m8; m=19/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.912672; --CaCACACACACACACACACACrC ; cor=; Ncor= a 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049

positions_6nt_m2_shift2 (positions_6nt_m2)
; positions_7nt_m5 versus positions_6nt_m2; m=20/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.908713; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256

positions_6nt_m10_shift0 (positions_6nt_m10)
; positions_7nt_m5 versus positions_6nt_m10; m=21/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.907244; cacamACACACACACACACACACa- ; cor=; Ncor= a 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 0 c 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 0 g 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 0 t 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785 0

dyads_m10_shift7 (dyads_m10)
; positions_7nt_m5 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=6; strand=D; shift=7; score=0.73514; -------ACACACACACACACrCAC ; cor=; Ncor= a 0 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 c 0 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 g 0 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 t 0 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123

oligos_7nt_mkv5_m8_shift5 (oligos_7nt_mkv5_m8)
; positions_7nt_m5 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=4; strand=D; shift=5; score=0.655631; -----ACACACACACACACAC---- ; cor=; Ncor= a 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 0 0 c 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 0 0 g 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 0 0 t 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0 0 0

oligos_6nt_mkv4_m5_rc_shift3 (oligos_6nt_mkv4_m5_rc)
; positions_7nt_m5 versus oligos_6nt_mkv4_m5_rc; m=24/33; ncol2=16; w=0; offset=2; strand=R; shift=3; score=0.607868; ---acAsACACrCACAsac------ ; cor=; Ncor= a 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 0 0 0 0 c 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 0 0 0 0 g 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 0 0 0 0 t 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0 0 0 0 0

oligos_6nt_mkv4_m2_shift8 (oligos_6nt_mkv4_m2)
; positions_7nt_m5 versus oligos_6nt_mkv4_m2; m=25/33; ncol2=16; w=0; offset=7; strand=D; shift=8; score=0.589586; --------caCwCACAyACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 c 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 g 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 t 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0

positions_6nt_m1_shift5 (positions_6nt_m1)
; positions_7nt_m5 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=4; strand=D; shift=5; score=0.564864; -----acACACrCACACrca----- ; cor=; Ncor= a 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 0 0 0 0 c 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 0 0 0 0 g 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 0 0 0 0 t 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0 0 0 0 0

dyads_m7_shift2 (dyads_m7)
; positions_7nt_m5 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=1; strand=D; shift=2; score=0.557424; --camACACACACrCac-------- ; cor=; Ncor= a 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 0 c 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 0 g 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 0 t 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m4_shift12 (oligos_7nt_mkv5_m4)
; positions_7nt_m5 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=11; strand=D; shift=12; score=0.525534; ------------caCACAcACACac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 c 0 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 g 0 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 t 0 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279

oligos_7nt_mkv5_m5_shift6 (oligos_7nt_mkv5_m5)
; positions_7nt_m5 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=5; strand=D; shift=6; score=0.499779; ------caCACGCACACmca----- ; cor=; Ncor= a 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 0 0 c 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 0 0 g 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 0 0 t 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0 0 0

dyads_m4_shift2 (dyads_m4)
; positions_7nt_m5 versus dyads_m4; m=30/33; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.486415; --camACACACrCaC---------- ; cor=; Ncor= a 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 0 0 c 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 0 0 g 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 0 0 t 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0 0 0

dyads_m9_shift2 (dyads_m9)
; positions_7nt_m5 versus dyads_m9; m=31/33; ncol2=14; w=0; offset=1; strand=D; shift=2; score=0.485093; --caAACACACACmca--------- ; cor=; Ncor= a 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 0 0 c 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 0 0 g 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 0 0 t 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0 0 0

dyads_m6_shift8 (dyads_m6)
; positions_7nt_m5 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=7; strand=D; shift=8; score=0.474462; --------camACACACAyac---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 c 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 g 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 t 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0

oligos_7nt_mkv5_m9_shift8 (oligos_7nt_mkv5_m9)
; positions_7nt_m5 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=7; strand=D; shift=8; score=0.418371; --------caCAsACACAAam---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 0 0 c 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 0 0 g 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 0 0 t 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m8_shift0 ; 2 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m8_shift0 (oligos_6nt_mkv4_m8)
; oligos_6nt_mkv4_m8; m=0 (reference); ncol1=10; shift=0; ncol=10; mrCAAAACam ; Alignment reference a 588 575 0 1505 1527 1517 1531 0 700 535 c 401 285 1520 0 0 0 0 1533 288 428 g 275 408 0 3 0 1 0 0 317 327 t 269 265 13 25 6 15 2 0 228 243

oligos_6nt_mkv4_m8_shift0 (oligos_6nt_mkv4_m8)
; oligos_6nt_mkv4_m8 versus oligos_6nt_mkv4_m8; m=1/1; ncol2=10; w=0; offset=0; strand=D; shift=0; score= 1; mrCAAAACam ; cor=; Ncor= a 588 575 0 1505 1527 1517 1531 0 700 535 c 401 285 1520 0 0 0 0 1533 288 428 g 275 408 0 3 0 1 0 0 317 327 t 269 265 13 25 6 15 2 0 228 243

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m5_shift10 ; 33 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m5_shift10 (oligos_7nt_mkv5_m5)
; oligos_7nt_mkv5_m5; m=0 (reference); ncol1=14; shift=10; ncol=24; ----------caCACGCACACmca ; Alignment reference a 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 c 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 g 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 t 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501

oligos_7nt_mkv5_m5_shift10 (oligos_7nt_mkv5_m5)
; oligos_7nt_mkv5_m5 versus oligos_7nt_mkv5_m5; m=1/32; ncol2=14; w=0; offset=0; strand=D; shift=10; score= 1; ----------caCACGCACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 c 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 g 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 t 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501

positions_6nt_m1_shift9 (positions_6nt_m1)
; oligos_7nt_mkv5_m5 versus positions_6nt_m1; m=2/32; ncol2=15; w=-1; offset=-1; strand=D; shift=9; score=0.866036; ---------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601

dyads_m9_shift10 (dyads_m9)
; oligos_7nt_mkv5_m5 versus dyads_m9; m=3/32; ncol2=14; w=0; offset=0; strand=D; shift=10; score=0.82417; ----------caAACACACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 c 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 g 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 t 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431

oligos_7nt_mkv5_m4_shift10 (oligos_7nt_mkv5_m4)
; oligos_7nt_mkv5_m5 versus oligos_7nt_mkv5_m4; m=4/32; ncol2=13; w=0; offset=0; strand=D; shift=10; score=0.799822; ----------caCACAcACACac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 c 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 g 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 t 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0

dyads_m7_shift10 (dyads_m7)
; oligos_7nt_mkv5_m5 versus dyads_m7; m=5/32; ncol2=15; w=0; offset=0; strand=D; shift=10; score=0.746311; ----------camACACACACrCa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 c 0 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 g 0 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 t 0 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558

oligos_7nt_mkv5_m8_shift9 (oligos_7nt_mkv5_m8)
; oligos_7nt_mkv5_m5 versus oligos_7nt_mkv5_m8; m=6/32; ncol2=16; w=-1; offset=-1; strand=D; shift=9; score=0.731657; ---------ACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 c 0 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 g 0 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 t 0 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929

oligos_6nt_mkv4_m2_shift8 (oligos_6nt_mkv4_m2)
; oligos_7nt_mkv5_m5 versus oligos_6nt_mkv4_m2; m=7/32; ncol2=16; w=-2; offset=-2; strand=D; shift=8; score=0.719043; --------caCwCACAyACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 c 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 g 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 t 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421

dyads_m6_shift10 (dyads_m6)
; oligos_7nt_mkv5_m5 versus dyads_m6; m=8/32; ncol2=13; w=0; offset=0; strand=D; shift=10; score=0.704792; ----------camACACACAyac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 c 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 g 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 t 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0

dyads_m4_shift10 (dyads_m4)
; oligos_7nt_mkv5_m5 versus dyads_m4; m=9/32; ncol2=13; w=0; offset=0; strand=D; shift=10; score=0.699014; ----------camACACACrCaC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 c 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 g 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 t 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0

oligos_6nt_mkv4_m5_rc_shift7 (oligos_6nt_mkv4_m5_rc)
; oligos_7nt_mkv5_m5 versus oligos_6nt_mkv4_m5_rc; m=10/32; ncol2=16; w=-3; offset=-3; strand=R; shift=7; score=0.694767; -------acAsACACrCACAsac- ; cor=; Ncor= a 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 c 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 g 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 t 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0

dyads_m10_shift7 (dyads_m10)
; oligos_7nt_mkv5_m5 versus dyads_m10; m=11/32; ncol2=18; w=-3; offset=-3; strand=D; shift=7; score=0.658409; -------ACACACACACACACrCA ; cor=; Ncor= a 0 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 c 0 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 g 0 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 t 0 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902

positions_6nt_m8_shift2 (positions_6nt_m8)
; oligos_7nt_mkv5_m5 versus positions_6nt_m8; m=12/32; ncol2=23; w=-8; offset=-8; strand=D; shift=2; score=0.537212; --caCACACACACACACACACACa ; cor=; Ncor= a 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 c 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 g 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 t 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903

positions_6nt_m9_shift1 (positions_6nt_m9)
; oligos_7nt_mkv5_m5 versus positions_6nt_m9; m=13/32; ncol2=24; w=-9; offset=-9; strand=D; shift=1; score=0.517106; -acaCacACACACACACACACACa ; cor=; Ncor= a 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 c 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 g 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 t 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142

positions_6nt_m3_rc_shift3 (positions_6nt_m3_rc)
; oligos_7nt_mkv5_m5 versus positions_6nt_m3_rc; m=14/32; ncol2=24; w=-7; offset=-7; strand=R; shift=3; score=0.512505; ---mmmmmmaCACACrCACACACa ; cor=; Ncor= a 0 0 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 c 0 0 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 g 0 0 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 t 0 0 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902

positions_7nt_m4_shift10 (positions_7nt_m4)
; oligos_7nt_mkv5_m5 versus positions_7nt_m4; m=15/32; ncol2=24; w=0; offset=0; strand=D; shift=10; score=0.503422; ----------caCACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 c 0 0 0 0 0 0 0 0 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 g 0 0 0 0 0 0 0 0 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 t 0 0 0 0 0 0 0 0 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170

positions_7nt_m9_shift4 (positions_7nt_m9)
; oligos_7nt_mkv5_m5 versus positions_7nt_m9; m=16/32; ncol2=24; w=-6; offset=-6; strand=D; shift=4; score=0.501169; ----caCACACACACACACACACA ; cor=; Ncor= a 0 0 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 c 0 0 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 g 0 0 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 t 0 0 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406

positions_7nt_m2_shift4 (positions_7nt_m2)
; oligos_7nt_mkv5_m5 versus positions_7nt_m2; m=17/32; ncol2=24; w=-6; offset=-6; strand=D; shift=4; score=0.50041; ----cacACACACACACACACACA ; cor=; Ncor= a 0 0 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 c 0 0 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 g 0 0 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 t 0 0 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248

positions_6nt_m7_shift6 (positions_6nt_m7)
; oligos_7nt_mkv5_m5 versus positions_6nt_m7; m=18/32; ncol2=24; w=-4; offset=-4; strand=D; shift=6; score=0.500263; ------caCaCACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 c 0 0 0 0 0 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 g 0 0 0 0 0 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 t 0 0 0 0 0 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213

positions_7nt_m5_shift5 (positions_7nt_m5)
; oligos_7nt_mkv5_m5 versus positions_7nt_m5; m=19/32; ncol2=24; w=-5; offset=-5; strand=D; shift=5; score=0.499779; -----acaCACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 c 0 0 0 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 g 0 0 0 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 t 0 0 0 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287

positions_7nt_m1_shift6 (positions_7nt_m1)
; oligos_7nt_mkv5_m5 versus positions_7nt_m1; m=20/32; ncol2=24; w=-4; offset=-4; strand=D; shift=6; score=0.499369; ------cacACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 c 0 0 0 0 0 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 g 0 0 0 0 0 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 t 0 0 0 0 0 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147

positions_7nt_m8_shift3 (positions_7nt_m8)
; oligos_7nt_mkv5_m5 versus positions_7nt_m8; m=21/32; ncol2=24; w=-7; offset=-7; strand=D; shift=3; score= 0.4984; ---acACACACACACACACACACA ; cor=; Ncor= a 0 0 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 c 0 0 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 g 0 0 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 t 0 0 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535

dyads_m8_shift10 (dyads_m8)
; oligos_7nt_mkv5_m5 versus dyads_m8; m=22/32; ncol2=24; w=0; offset=0; strand=D; shift=10; score=0.498354; ----------CaCACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 c 0 0 0 0 0 0 0 0 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 g 0 0 0 0 0 0 0 0 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 t 0 0 0 0 0 0 0 0 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131

positions_7nt_m7_shift0 (positions_7nt_m7)
; oligos_7nt_mkv5_m5 versus positions_7nt_m7; m=23/32; ncol2=24; w=-10; offset=-10; strand=D; shift=0; score=0.497746; caCACACACACACACACACACaca ; cor=; Ncor= a 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231

dyads_m1_shift0 (dyads_m1)
; oligos_7nt_mkv5_m5 versus dyads_m1; m=24/32; ncol2=24; w=-10; offset=-10; strand=D; shift=0; score=0.497652; cacACACACACACACACACACaCa ; cor=; Ncor= a 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002

positions_7nt_m3_rc_shift6 (positions_7nt_m3_rc)
; oligos_7nt_mkv5_m5 versus positions_7nt_m3_rc; m=25/32; ncol2=24; w=-4; offset=-4; strand=R; shift=6; score=0.495603; ------cacACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 c 0 0 0 0 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 g 0 0 0 0 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 t 0 0 0 0 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180

positions_6nt_m2_shift0 (positions_6nt_m2)
; oligos_7nt_mkv5_m5 versus positions_6nt_m2; m=26/32; ncol2=24; w=-10; offset=-10; strand=D; shift=0; score=0.490066; caCACACACACACACACACACaca ; cor=; Ncor= a 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111

positions_6nt_m4_shift1 (positions_6nt_m4)
; oligos_7nt_mkv5_m5 versus positions_6nt_m4; m=27/32; ncol2=24; w=-9; offset=-9; strand=D; shift=1; score=0.490035; -acrCACACACACACACACACACa ; cor=; Ncor= a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646

positions_6nt_m10_shift0 (positions_6nt_m10)
; oligos_7nt_mkv5_m5 versus positions_6nt_m10; m=28/32; ncol2=24; w=-10; offset=-10; strand=D; shift=0; score=0.485047; cacamACACACACACACACACACa ; cor=; Ncor= a 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785

positions_6nt_m5_rc_shift1 (positions_6nt_m5_rc)
; oligos_7nt_mkv5_m5 versus positions_6nt_m5_rc; m=29/32; ncol2=24; w=-9; offset=-9; strand=R; shift=1; score=0.48472; -acaCACACACACACACACACACa ; cor=; Ncor= a 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 c 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 g 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 t 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032

positions_7nt_m6_shift3 (positions_7nt_m6)
; oligos_7nt_mkv5_m5 versus positions_7nt_m6; m=30/32; ncol2=24; w=-7; offset=-7; strand=D; shift=3; score=0.484316; ---acaCACACACACACACACACA ; cor=; Ncor= a 0 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 c 0 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 g 0 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 t 0 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508

positions_7nt_m10_shift3 (positions_7nt_m10)
; oligos_7nt_mkv5_m5 versus positions_7nt_m10; m=31/32; ncol2=24; w=-7; offset=-7; strand=D; shift=3; score=0.483291; ---acACACACACACACACACACA ; cor=; Ncor= a 0 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 c 0 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 g 0 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 t 0 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405

positions_6nt_m6_shift1 (positions_6nt_m6)
; oligos_7nt_mkv5_m5 versus positions_6nt_m6; m=32/32; ncol2=24; w=-9; offset=-9; strand=D; shift=1; score=0.482922; -acamACACACACACACACACACa ; cor=; Ncor= a 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 c 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 g 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 t 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m2_shift8 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m2_shift8 (oligos_6nt_mkv4_m2)
; oligos_6nt_mkv4_m2; m=0 (reference); ncol1=16; shift=8; ncol=24; --------caCwCACAyACACmca ; Alignment reference a 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 c 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 g 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 t 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421

oligos_6nt_mkv4_m2_shift8 (oligos_6nt_mkv4_m2)
; oligos_6nt_mkv4_m2 versus oligos_6nt_mkv4_m2; m=1/33; ncol2=16; w=0; offset=0; strand=D; shift=8; score= 1; --------caCwCACAyACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 c 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 g 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 t 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421

oligos_7nt_mkv5_m8_shift9 (oligos_7nt_mkv5_m8)
; oligos_6nt_mkv4_m2 versus oligos_7nt_mkv5_m8; m=2/33; ncol2=16; w=0; offset=1; strand=D; shift=9; score=0.807829; ---------ACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 c 0 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 g 0 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 t 0 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929

dyads_m10_shift7 (dyads_m10)
; oligos_6nt_mkv4_m2 versus dyads_m10; m=3/33; ncol2=18; w=-1; offset=-1; strand=D; shift=7; score=0.79183; -------ACACACACACACACrCA ; cor=; Ncor= a 0 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 c 0 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 g 0 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 t 0 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902

positions_6nt_m1_shift9 (positions_6nt_m1)
; oligos_6nt_mkv4_m2 versus positions_6nt_m1; m=4/33; ncol2=15; w=0; offset=1; strand=D; shift=9; score=0.779902; ---------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601

dyads_m7_shift8 (dyads_m7)
; oligos_6nt_mkv4_m2 versus dyads_m7; m=5/33; ncol2=15; w=0; offset=0; strand=D; shift=8; score=0.765845; --------camACACACACrCac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 c 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 g 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 t 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0

oligos_7nt_mkv5_m4_shift10 (oligos_7nt_mkv5_m4)
; oligos_6nt_mkv4_m2 versus oligos_7nt_mkv5_m4; m=6/33; ncol2=13; w=0; offset=2; strand=D; shift=10; score=0.758749; ----------caCACAcACACac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 c 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 g 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 t 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0

oligos_7nt_mkv5_m5_shift10 (oligos_7nt_mkv5_m5)
; oligos_6nt_mkv4_m2 versus oligos_7nt_mkv5_m5; m=7/33; ncol2=14; w=0; offset=2; strand=D; shift=10; score=0.719043; ----------caCACGCACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 c 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 g 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 t 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501

dyads_m9_shift10 (dyads_m9)
; oligos_6nt_mkv4_m2 versus dyads_m9; m=8/33; ncol2=14; w=0; offset=2; strand=D; shift=10; score=0.717833; ----------caAACACACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 c 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 g 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 t 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431

oligos_6nt_mkv4_m5_rc_shift7 (oligos_6nt_mkv4_m5_rc)
; oligos_6nt_mkv4_m2 versus oligos_6nt_mkv4_m5_rc; m=9/33; ncol2=16; w=-1; offset=-1; strand=R; shift=7; score=0.697932; -------acAsACACrCACAsac- ; cor=; Ncor= a 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 c 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 g 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 t 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0

dyads_m6_shift10 (dyads_m6)
; oligos_6nt_mkv4_m2 versus dyads_m6; m=10/33; ncol2=13; w=0; offset=2; strand=D; shift=10; score=0.636311; ----------camACACACAyac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 c 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 g 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 t 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0

dyads_m4_shift8 (dyads_m4)
; oligos_6nt_mkv4_m2 versus dyads_m4; m=11/33; ncol2=13; w=0; offset=0; strand=D; shift=8; score=0.632586; --------camACACACrCaC--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 c 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 g 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 t 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0

positions_6nt_m8_shift2 (positions_6nt_m8)
; oligos_6nt_mkv4_m2 versus positions_6nt_m8; m=12/33; ncol2=23; w=-6; offset=-6; strand=D; shift=2; score=0.619664; --caCACACACACACACACACACa ; cor=; Ncor= a 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 c 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 g 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 t 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903

positions_7nt_m1_shift0 (positions_7nt_m1)
; oligos_6nt_mkv4_m2 versus positions_7nt_m1; m=13/33; ncol2=24; w=-8; offset=-8; strand=D; shift=0; score=0.610085; cacACACACACACACACACACACa ; cor=; Ncor= a 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835

positions_6nt_m2_shift2 (positions_6nt_m2)
; oligos_6nt_mkv4_m2 versus positions_6nt_m2; m=14/33; ncol2=24; w=-6; offset=-6; strand=D; shift=2; score=0.608752; --caCACACACACACACACACACa ; cor=; Ncor= a 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 c 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 g 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 t 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027

positions_6nt_m7_shift0 (positions_6nt_m7)
; oligos_6nt_mkv4_m2 versus positions_6nt_m7; m=15/33; ncol2=24; w=-8; offset=-8; strand=D; shift=0; score=0.608179; caCaCACACACACACACACACACa ; cor=; Ncor= a 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062

positions_7nt_m10_shift5 (positions_7nt_m10)
; oligos_6nt_mkv4_m2 versus positions_7nt_m10; m=16/33; ncol2=24; w=-3; offset=-3; strand=D; shift=5; score=0.604103; -----acACACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 c 0 0 0 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 g 0 0 0 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 t 0 0 0 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468

positions_6nt_m10_shift4 (positions_6nt_m10)
; oligos_6nt_mkv4_m2 versus positions_6nt_m10; m=17/33; ncol2=24; w=-4; offset=-4; strand=D; shift=4; score=0.603636; ----cacamACACACACACACACA ; cor=; Ncor= a 0 0 0 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 c 0 0 0 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 g 0 0 0 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 t 0 0 0 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355

positions_6nt_m6_shift5 (positions_6nt_m6)
; oligos_6nt_mkv4_m2 versus positions_6nt_m6; m=18/33; ncol2=24; w=-3; offset=-3; strand=D; shift=5; score=0.602774; -----acamACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 c 0 0 0 0 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 g 0 0 0 0 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 t 0 0 0 0 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395

dyads_m8_shift2 (dyads_m8)
; oligos_6nt_mkv4_m2 versus dyads_m8; m=19/33; ncol2=24; w=-6; offset=-6; strand=D; shift=2; score=0.602003; --CaCACACACACACACACACACr ; cor=; Ncor= a 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 c 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 g 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 t 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644

positions_6nt_m5_rc_shift7 (positions_6nt_m5_rc)
; oligos_6nt_mkv4_m2 versus positions_6nt_m5_rc; m=20/33; ncol2=24; w=-1; offset=-1; strand=R; shift=7; score=0.601873; -------acaCACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 c 0 0 0 0 0 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 g 0 0 0 0 0 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 t 0 0 0 0 0 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399

positions_6nt_m4_shift7 (positions_6nt_m4)
; oligos_6nt_mkv4_m2 versus positions_6nt_m4; m=21/33; ncol2=24; w=-1; offset=-1; strand=D; shift=7; score=0.601451; -------acrCACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 c 0 0 0 0 0 0 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 g 0 0 0 0 0 0 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 t 0 0 0 0 0 0 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83

positions_7nt_m6_shift5 (positions_7nt_m6)
; oligos_6nt_mkv4_m2 versus positions_7nt_m6; m=22/33; ncol2=24; w=-3; offset=-3; strand=D; shift=5; score=0.600229; -----acaCACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 c 0 0 0 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 g 0 0 0 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 t 0 0 0 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555

dyads_m1_shift0 (dyads_m1)
; oligos_6nt_mkv4_m2 versus dyads_m1; m=23/33; ncol2=24; w=-8; offset=-8; strand=D; shift=0; score=0.600148; cacACACACACACACACACACaCa ; cor=; Ncor= a 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002

positions_7nt_m7_shift2 (positions_7nt_m7)
; oligos_6nt_mkv4_m2 versus positions_7nt_m7; m=24/33; ncol2=24; w=-6; offset=-6; strand=D; shift=2; score=0.600034; --caCACACACACACACACACACa ; cor=; Ncor= a 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 c 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 g 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 t 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959

positions_7nt_m4_shift4 (positions_7nt_m4)
; oligos_6nt_mkv4_m2 versus positions_7nt_m4; m=25/33; ncol2=24; w=-4; offset=-4; strand=D; shift=4; score=0.595027; ----caCACACACACACACACACA ; cor=; Ncor= a 0 0 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 c 0 0 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 g 0 0 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 t 0 0 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408

positions_6nt_m9_shift1 (positions_6nt_m9)
; oligos_6nt_mkv4_m2 versus positions_6nt_m9; m=26/33; ncol2=24; w=-7; offset=-7; strand=D; shift=1; score=0.592896; -acaCacACACACACACACACACa ; cor=; Ncor= a 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 c 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 g 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 t 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142

positions_7nt_m9_shift0 (positions_7nt_m9)
; oligos_6nt_mkv4_m2 versus positions_7nt_m9; m=27/33; ncol2=24; w=-8; offset=-8; strand=D; shift=0; score=0.592441; caCACACACACACACACACACACa ; cor=; Ncor= a 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216

positions_7nt_m3_rc_shift0 (positions_7nt_m3_rc)
; oligos_6nt_mkv4_m2 versus positions_7nt_m3_rc; m=28/33; ncol2=24; w=-8; offset=-8; strand=R; shift=0; score=0.592181; cacACACACACACACACACACACa ; cor=; Ncor= a 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888

positions_6nt_m3_rc_shift1 (positions_6nt_m3_rc)
; oligos_6nt_mkv4_m2 versus positions_6nt_m3_rc; m=29/33; ncol2=24; w=-7; offset=-7; strand=R; shift=1; score=0.591874; -mmmmmmaCACACrCACACACaCa ; cor=; Ncor= a 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 c 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 g 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 t 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680

positions_7nt_m2_shift0 (positions_7nt_m2)
; oligos_6nt_mkv4_m2 versus positions_7nt_m2; m=30/33; ncol2=24; w=-8; offset=-8; strand=D; shift=0; score=0.591737; cacACACACACACACACACACACa ; cor=; Ncor= a 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894

positions_7nt_m8_shift1 (positions_7nt_m8)
; oligos_6nt_mkv4_m2 versus positions_7nt_m8; m=31/33; ncol2=24; w=-7; offset=-7; strand=D; shift=1; score=0.591419; -acACACACACACACACACACACa ; cor=; Ncor= a 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 c 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 g 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 t 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222

positions_7nt_m5_shift1 (positions_7nt_m5)
; oligos_6nt_mkv4_m2 versus positions_7nt_m5; m=32/33; ncol2=24; w=-7; offset=-7; strand=D; shift=1; score=0.589586; -acaCACACACACACACACACACa ; cor=; Ncor= a 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 c 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 g 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 t 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994

oligos_7nt_mkv5_m9_shift10 (oligos_7nt_mkv5_m9)
; oligos_6nt_mkv4_m2 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=2; strand=D; shift=10; score=0.576659; ----------caCAsACACAAam- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 c 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 g 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 t 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0

One-to-n matrix alignment; reference matrix: positions_7nt_m7_shift1 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
positions_7nt_m7_shift1 (positions_7nt_m7)
; positions_7nt_m7; m=0 (reference); ncol1=24; shift=1; ncol=25; -caCACACACACACACACACACaca ; Alignment reference a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231

positions_7nt_m7_shift1 (positions_7nt_m7)
; positions_7nt_m7 versus positions_7nt_m7; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231

positions_6nt_m2_shift1 (positions_6nt_m2)
; positions_7nt_m7 versus positions_6nt_m2; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.996245; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111

dyads_m8_shift1 (dyads_m8)
; positions_7nt_m7 versus dyads_m8; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.994701; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988

positions_7nt_m4_shift1 (positions_7nt_m4)
; positions_7nt_m7 versus positions_7nt_m4; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.993574; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233

dyads_m1_shift1 (dyads_m1)
; positions_7nt_m7 versus dyads_m1; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.993344; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002

positions_7nt_m9_shift1 (positions_7nt_m9)
; positions_7nt_m7 versus positions_7nt_m9; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 0.9912; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216

positions_7nt_m2_shift1 (positions_7nt_m2)
; positions_7nt_m7 versus positions_7nt_m2; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990022; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894

positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)
; positions_7nt_m7 versus positions_7nt_m3_rc; m=8/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.99001; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888

positions_7nt_m1_shift1 (positions_7nt_m1)
; positions_7nt_m7 versus positions_7nt_m1; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989526; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835

positions_6nt_m7_shift1 (positions_6nt_m7)
; positions_7nt_m7 versus positions_6nt_m7; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.988506; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062

positions_6nt_m10_shift1 (positions_6nt_m10)
; positions_7nt_m7 versus positions_6nt_m10; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.978567; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785

positions_6nt_m8_shift1 (positions_6nt_m8)
; positions_7nt_m7 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.947773; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0

positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)
; positions_7nt_m7 versus positions_6nt_m5_rc; m=13/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.913961; acaCACACACACACACACACACac- ; cor=; Ncor= a 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 0 c 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 0 g 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 0 t 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346 0

positions_7nt_m5_shift0 (positions_7nt_m5)
; positions_7nt_m7 versus positions_7nt_m5; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.913937; acaCACACACACACACACACACac- ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 0 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 0 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 0 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250 0

positions_6nt_m4_shift0 (positions_6nt_m4)
; positions_7nt_m7 versus positions_6nt_m4; m=15/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.913766; acrCACACACACACACACACACac- ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 0 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 0 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 0 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762 0

positions_7nt_m6_shift0 (positions_7nt_m6)
; positions_7nt_m7 versus positions_7nt_m6; m=16/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.912285; acaCACACACACACACACACACac- ; cor=; Ncor= a 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 0 c 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 0 g 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 0 t 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314 0

positions_7nt_m10_shift0 (positions_7nt_m10)
; positions_7nt_m7 versus positions_7nt_m10; m=17/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.912104; acACACACACACACACACACACaC- ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 0 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 0 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 0 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221 0

positions_7nt_m8_shift0 (positions_7nt_m8)
; positions_7nt_m7 versus positions_7nt_m8; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.911123; acACACACACACACACACACACac- ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 0 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 0 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 0 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444 0

positions_6nt_m6_shift0 (positions_6nt_m6)
; positions_7nt_m7 versus positions_6nt_m6; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910028; acamACACACACACACACACACac- ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 0 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 0 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 0 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141 0

positions_6nt_m9_shift0 (positions_6nt_m9)
; positions_7nt_m7 versus positions_6nt_m9; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.903631; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0

positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)
; positions_7nt_m7 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.855306; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0

dyads_m10_shift6 (dyads_m10)
; positions_7nt_m7 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=5; strand=D; shift=6; score=0.739082; ------ACACACACACACACrCAC- ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0

oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)
; positions_7nt_m7 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=7; strand=D; shift=8; score=0.661346; --------ACACACACACACACAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0

oligos_6nt_mkv4_m2_shift7 (oligos_6nt_mkv4_m2)
; positions_7nt_m7 versus oligos_6nt_mkv4_m2; m=24/33; ncol2=16; w=0; offset=6; strand=D; shift=7; score=0.600034; -------caCwCACAyACACmca-- ; cor=; Ncor= a 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 0 c 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 0 g 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 0 t 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0 0

oligos_6nt_mkv4_m5_rc_shift8 (oligos_6nt_mkv4_m5_rc)
; positions_7nt_m7 versus oligos_6nt_mkv4_m5_rc; m=25/33; ncol2=16; w=0; offset=7; strand=R; shift=8; score=0.599476; --------acAsACACrCACAsac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 c 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 g 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 t 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0

positions_6nt_m1_shift10 (positions_6nt_m1)
; positions_7nt_m7 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=9; strand=D; shift=10; score=0.571444; ----------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601

dyads_m7_shift5 (dyads_m7)
; positions_7nt_m7 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=4; strand=D; shift=5; score=0.559271; -----camACACACACrCac----- ; cor=; Ncor= a 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 c 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 g 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 t 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0

oligos_7nt_mkv5_m4_shift1 (oligos_7nt_mkv5_m4)
; positions_7nt_m7 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.524788; -caCACAcACACac----------- ; cor=; Ncor= a 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 0 0 0 0 0 0 0 0 0 c 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 0 0 0 0 0 0 0 0 0 g 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 0 0 0 0 0 0 0 0 0 t 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0 0 0 0 0 0 0 0 0 0

oligos_7nt_mkv5_m5_shift11 (oligos_7nt_mkv5_m5)
; positions_7nt_m7 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=10; strand=D; shift=11; score=0.497746; -----------caCACGCACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 c 0 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 g 0 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 t 0 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501

dyads_m9_shift11 (dyads_m9)
; positions_7nt_m7 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=10; strand=D; shift=11; score=0.491177; -----------caAACACACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 c 0 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 g 0 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 t 0 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431

dyads_m6_shift5 (dyads_m6)
; positions_7nt_m7 versus dyads_m6; m=31/33; ncol2=13; w=0; offset=4; strand=D; shift=5; score=0.481439; -----camACACACAyac------- ; cor=; Ncor= a 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 c 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 g 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 t 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0

dyads_m4_shift5 (dyads_m4)
; positions_7nt_m7 versus dyads_m4; m=32/33; ncol2=13; w=0; offset=4; strand=D; shift=5; score=0.472799; -----camACACACrCaC------- ; cor=; Ncor= a 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 c 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 g 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 t 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0

oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)
; positions_7nt_m7 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.42994; -----------caCAsACACAAam- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m9_shift11 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)
; oligos_7nt_mkv5_m9; m=0 (reference); ncol1=13; shift=11; ncol=24; -----------caCAsACACAAam ; Alignment reference a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270

oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)
; oligos_7nt_mkv5_m9 versus oligos_7nt_mkv5_m9; m=1/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score= 1; -----------caCAsACACAAam ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270

oligos_7nt_mkv5_m4_shift11 (oligos_7nt_mkv5_m4)
; oligos_7nt_mkv5_m9 versus oligos_7nt_mkv5_m4; m=2/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score=0.779584; -----------caCACAcACACac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 c 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 g 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 t 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279

dyads_m6_shift11 (dyads_m6)
; oligos_7nt_mkv5_m9 versus dyads_m6; m=3/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score=0.76923; -----------camACACACAyac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 c 0 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 g 0 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 t 0 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355

dyads_m9_shift11 (dyads_m9)
; oligos_7nt_mkv5_m9 versus dyads_m9; m=4/33; ncol2=14; w=0; offset=0; strand=D; shift=11; score=0.666533; -----------caAACACACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 c 0 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 g 0 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 t 0 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373

oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)
; oligos_7nt_mkv5_m9 versus oligos_7nt_mkv5_m8; m=5/33; ncol2=16; w=-3; offset=-3; strand=D; shift=8; score=0.66036; --------ACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224

oligos_7nt_mkv5_m1_shift13 (oligos_7nt_mkv5_m1)
; oligos_7nt_mkv5_m9 versus oligos_7nt_mkv5_m1; m=6/33; ncol2=11; w=0; offset=2; strand=D; shift=13; score=0.64976; -------------maAACACAAmm ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 0 623 573 1802 1747 96 1720 81 1680 1767 555 640 c 0 0 0 0 0 0 0 0 0 0 0 0 0 544 437 1 22 1609 67 1586 57 20 518 599 g 0 0 0 0 0 0 0 0 0 0 0 0 0 384 449 28 54 61 58 114 51 39 350 326 t 0 0 0 0 0 0 0 0 0 0 0 0 0 329 421 49 57 114 35 99 92 54 457 315

dyads_m7_shift11 (dyads_m7)
; oligos_7nt_mkv5_m9 versus dyads_m7; m=7/33; ncol2=15; w=0; offset=0; strand=D; shift=11; score=0.634936; -----------camACACACACrC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 c 0 0 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 g 0 0 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 t 0 0 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135

positions_6nt_m1_shift10 (positions_6nt_m1)
; oligos_7nt_mkv5_m9 versus positions_6nt_m1; m=8/33; ncol2=15; w=-1; offset=-1; strand=D; shift=10; score=0.612525; ----------acACACrCACACrc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 c 0 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 g 0 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 t 0 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605

oligos_6nt_mkv4_m5_rc_shift8 (oligos_6nt_mkv4_m5_rc)
; oligos_7nt_mkv5_m9 versus oligos_6nt_mkv4_m5_rc; m=9/33; ncol2=16; w=-3; offset=-3; strand=R; shift=8; score=0.59826; --------acAsACACrCACAsac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 c 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 g 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 t 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214

oligos_6nt_mkv4_m2_shift9 (oligos_6nt_mkv4_m2)
; oligos_7nt_mkv5_m9 versus oligos_6nt_mkv4_m2; m=10/33; ncol2=16; w=-2; offset=-2; strand=D; shift=9; score=0.576659; ---------caCwCACAyACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 c 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 g 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 t 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362

dyads_m10_shift8 (dyads_m10)
; oligos_7nt_mkv5_m9 versus dyads_m10; m=11/33; ncol2=18; w=-3; offset=-3; strand=D; shift=8; score=0.563617; --------ACACACACACACACrC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 c 0 0 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 g 0 0 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 t 0 0 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380

dyads_m4_shift13 (dyads_m4)
; oligos_7nt_mkv5_m9 versus dyads_m4; m=12/33; ncol2=13; w=0; offset=2; strand=D; shift=13; score=0.535514; -------------camACACACrC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 c 0 0 0 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 g 0 0 0 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 t 0 0 0 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33

positions_6nt_m2_shift1 (positions_6nt_m2)
; oligos_7nt_mkv5_m9 versus positions_6nt_m2; m=13/33; ncol2=24; w=-10; offset=-10; strand=D; shift=1; score=0.443916; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256

positions_6nt_m4_shift0 (positions_6nt_m4)
; oligos_7nt_mkv5_m9 versus positions_6nt_m4; m=14/33; ncol2=24; w=-11; offset=-11; strand=D; shift=0; score=0.437756; acrCACACACACACACACACACac ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762

positions_6nt_m8_shift1 (positions_6nt_m8)
; oligos_7nt_mkv5_m9 versus positions_6nt_m8; m=15/33; ncol2=23; w=-10; offset=-10; strand=D; shift=1; score=0.435863; -caCACACACACACACACACACac ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027

positions_6nt_m10_shift3 (positions_6nt_m10)
; oligos_7nt_mkv5_m9 versus positions_6nt_m10; m=16/33; ncol2=24; w=-8; offset=-8; strand=D; shift=3; score=0.435597; ---cacamACACACACACACACAC ; cor=; Ncor= a 0 0 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 c 0 0 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 g 0 0 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 t 0 0 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506

positions_7nt_m8_shift0 (positions_7nt_m8)
; oligos_7nt_mkv5_m9 versus positions_7nt_m8; m=17/33; ncol2=24; w=-11; offset=-11; strand=D; shift=0; score=0.434797; acACACACACACACACACACACac ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444

positions_6nt_m6_shift4 (positions_6nt_m6)
; oligos_7nt_mkv5_m9 versus positions_6nt_m6; m=18/33; ncol2=24; w=-7; offset=-7; strand=D; shift=4; score=0.434035; ----acamACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 c 0 0 0 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 g 0 0 0 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 t 0 0 0 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618

positions_7nt_m7_shift1 (positions_7nt_m7)
; oligos_7nt_mkv5_m9 versus positions_7nt_m7; m=19/33; ncol2=24; w=-10; offset=-10; strand=D; shift=1; score=0.42994; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313

dyads_m8_shift1 (dyads_m8)
; oligos_7nt_mkv5_m9 versus dyads_m8; m=20/33; ncol2=24; w=-10; offset=-10; strand=D; shift=1; score=0.427745; -CaCACACACACACACACACACrC ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049

positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)
; oligos_7nt_mkv5_m9 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-11; offset=-11; strand=R; shift=0; score=0.425684; mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706

positions_7nt_m3_rc_shift3 (positions_7nt_m3_rc)
; oligos_7nt_mkv5_m9 versus positions_7nt_m3_rc; m=22/33; ncol2=24; w=-8; offset=-8; strand=R; shift=3; score=0.42551; ---cacACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 c 0 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 g 0 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 t 0 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536

dyads_m1_shift1 (dyads_m1)
; oligos_7nt_mkv5_m9 versus dyads_m1; m=23/33; ncol2=24; w=-10; offset=-10; strand=D; shift=1; score=0.423886; -cacACACACACACACACACACaC ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034

positions_7nt_m6_shift10 (positions_7nt_m6)
; oligos_7nt_mkv5_m9 versus positions_7nt_m6; m=24/33; ncol2=24; w=-1; offset=-1; strand=D; shift=10; score=0.423777; ----------acaCACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 c 0 0 0 0 0 0 0 0 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 g 0 0 0 0 0 0 0 0 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 t 0 0 0 0 0 0 0 0 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364

positions_6nt_m5_rc_shift6 (positions_6nt_m5_rc)
; oligos_7nt_mkv5_m9 versus positions_6nt_m5_rc; m=25/33; ncol2=24; w=-5; offset=-5; strand=R; shift=6; score=0.423581; ------acaCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 c 0 0 0 0 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 g 0 0 0 0 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 t 0 0 0 0 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514

positions_7nt_m10_shift4 (positions_7nt_m10)
; oligos_7nt_mkv5_m9 versus positions_7nt_m10; m=26/33; ncol2=24; w=-7; offset=-7; strand=D; shift=4; score=0.423493; ----acACACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 c 0 0 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 g 0 0 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 t 0 0 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507

positions_7nt_m4_shift1 (positions_7nt_m4)
; oligos_7nt_mkv5_m9 versus positions_7nt_m4; m=27/33; ncol2=24; w=-10; offset=-10; strand=D; shift=1; score=0.422951; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297

positions_7nt_m9_shift3 (positions_7nt_m9)
; oligos_7nt_mkv5_m9 versus positions_7nt_m9; m=28/33; ncol2=24; w=-8; offset=-8; strand=D; shift=3; score=0.420789; ---caCACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 c 0 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 g 0 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 t 0 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783

positions_7nt_m2_shift3 (positions_7nt_m2)
; oligos_7nt_mkv5_m9 versus positions_7nt_m2; m=29/33; ncol2=24; w=-8; offset=-8; strand=D; shift=3; score=0.420606; ---cacACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 c 0 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 g 0 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 t 0 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564

positions_6nt_m9_shift0 (positions_6nt_m9)
; oligos_7nt_mkv5_m9 versus positions_6nt_m9; m=30/33; ncol2=24; w=-11; offset=-11; strand=D; shift=0; score=0.418999; acaCacACACACACACACACACac ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244

positions_7nt_m5_shift4 (positions_7nt_m5)
; oligos_7nt_mkv5_m9 versus positions_7nt_m5; m=31/33; ncol2=24; w=-7; offset=-7; strand=D; shift=4; score=0.418371; ----acaCACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 c 0 0 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 g 0 0 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 t 0 0 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493

positions_7nt_m1_shift5 (positions_7nt_m1)
; oligos_7nt_mkv5_m9 versus positions_7nt_m1; m=32/33; ncol2=24; w=-6; offset=-6; strand=D; shift=5; score=0.418029; -----cacACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 c 0 0 0 0 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 g 0 0 0 0 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 t 0 0 0 0 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307

positions_6nt_m7_shift5 (positions_6nt_m7)
; oligos_7nt_mkv5_m9 versus positions_6nt_m7; m=33/33; ncol2=24; w=-6; offset=-6; strand=D; shift=5; score=0.417777; -----caCaCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 c 0 0 0 0 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 g 0 0 0 0 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 t 0 0 0 0 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420

One-to-n matrix alignment; reference matrix: dyads_m3_shift1 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m3_shift1 (dyads_m3)
; dyads_m3; m=0 (reference); ncol1=14; shift=1; ncol=15; -agCAGCAGCAGCag ; Alignment reference a 0 3023 732 205 4256 205 120 4427 196 120 4310 275 188 3102 833 c 0 572 721 4047 152 229 4354 108 164 4365 138 232 4152 534 744 g 0 704 2845 257 245 4149 96 157 4245 93 192 4045 171 729 2643 t 0 468 469 258 114 184 197 75 162 189 127 215 256 402 547

dyads_m3_shift1 (dyads_m3)
; dyads_m3 versus dyads_m3; m=1/2; ncol2=14; w=0; offset=0; strand=D; shift=1; score= 1; -agCAGCAGCAGCag ; cor=; Ncor= a 0 3023 732 205 4256 205 120 4427 196 120 4310 275 188 3102 833 c 0 572 721 4047 152 229 4354 108 164 4365 138 232 4152 534 744 g 0 704 2845 257 245 4149 96 157 4245 93 192 4045 171 729 2643 t 0 468 469 258 114 184 197 75 162 189 127 215 256 402 547

oligos_7nt_mkv5_m6_rc_shift0 (oligos_7nt_mkv5_m6_rc)
; dyads_m3 versus oligos_7nt_mkv5_m6_rc; m=2/2; ncol2=17; w=-1; offset=-1; strand=R; shift=0; score=0.799748; carCAGCArCAGCAs ; cor=; Ncor= a 317 1470 736 58 2042 101 41 2098 746 43 2085 110 44 2026 202 c 1342 279 200 2015 51 89 2098 35 102 2073 50 113 2066 45 770 g 291 261 1155 82 68 1972 40 37 1312 44 38 1919 31 82 1115 t 250 190 109 45 39 38 21 30 40 40 27 58 59 47 113

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m3_shift1 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv5_m3_shift1 (oligos_7nt_mkv5_m3)
; oligos_7nt_mkv5_m3; m=0 (reference); ncol1=12; shift=1; ncol=13; -caCCAmCACCac ; Alignment reference a 0 537 1591 66 86 2670 1679 63 2659 69 354 1474 675 c 0 1526 481 2678 2677 71 919 2713 103 2669 2209 633 1190 g 0 300 368 59 42 43 104 15 52 63 104 430 431 t 0 489 412 49 47 68 150 61 38 51 185 315 556

oligos_7nt_mkv5_m3_shift1 (oligos_7nt_mkv5_m3)
; oligos_7nt_mkv5_m3 versus oligos_7nt_mkv5_m3; m=1/3; ncol2=12; w=0; offset=0; strand=D; shift=1; score= 1; -caCCAmCACCac ; cor=; Ncor= a 0 537 1591 66 86 2670 1679 63 2659 69 354 1474 675 c 0 1526 481 2678 2677 71 919 2713 103 2669 2209 633 1190 g 0 300 368 59 42 43 104 15 52 63 104 430 431 t 0 489 412 49 47 68 150 61 38 51 185 315 556

oligos_6nt_mkv4_m4_shift2 (oligos_6nt_mkv4_m4)
; oligos_7nt_mkv5_m3 versus oligos_6nt_mkv4_m4; m=2/3; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.742798; --ammAACACCmc ; cor=; Ncor= a 0 0 603 434 886 1461 1470 34 1378 0 0 542 381 c 0 0 379 473 435 6 49 1453 126 1550 1575 416 540 g 0 0 284 341 132 31 32 32 22 11 3 328 294 t 0 0 322 340 135 90 37 69 62 27 10 302 373

dyads_m5_shift0 (dyads_m5)
; oligos_7nt_mkv5_m3 versus dyads_m5; m=3/3; ncol2=11; w=-1; offset=-1; strand=D; shift=0; score=0.669122; ccACCACCAcc-- ; cor=; Ncor= a 849 627 3918 50 30 4141 38 14 3899 676 705 0 0 c 2252 2408 191 4112 4096 103 4058 4126 239 2169 2498 0 0 g 690 543 129 102 115 126 110 85 188 692 474 0 0 t 681 894 234 208 231 102 266 247 146 935 795 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m4_shift1 ; 5 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m4_shift1 (oligos_6nt_mkv4_m4)
; oligos_6nt_mkv4_m4; m=0 (reference); ncol1=11; shift=1; ncol=12; -ammAACACCmc ; Alignment reference a 0 603 434 886 1461 1470 34 1378 0 0 542 381 c 0 379 473 435 6 49 1453 126 1550 1575 416 540 g 0 284 341 132 31 32 32 22 11 3 328 294 t 0 322 340 135 90 37 69 62 27 10 302 373

oligos_6nt_mkv4_m4_shift1 (oligos_6nt_mkv4_m4)
; oligos_6nt_mkv4_m4 versus oligos_6nt_mkv4_m4; m=1/4; ncol2=11; w=0; offset=0; strand=D; shift=1; score= 1; -ammAACACCmc ; cor=; Ncor= a 0 603 434 886 1461 1470 34 1378 0 0 542 381 c 0 379 473 435 6 49 1453 126 1550 1575 416 540 g 0 284 341 132 31 32 32 22 11 3 328 294 t 0 322 340 135 90 37 69 62 27 10 302 373

oligos_7nt_mkv5_m3_shift0 (oligos_7nt_mkv5_m3)
; oligos_6nt_mkv4_m4 versus oligos_7nt_mkv5_m3; m=2/4; ncol2=12; w=-1; offset=-1; strand=D; shift=0; score=0.742798; caCCAmCACCac ; cor=; Ncor= a 537 1591 66 86 2670 1679 63 2659 69 354 1474 675 c 1526 481 2678 2677 71 919 2713 103 2669 2209 633 1190 g 300 368 59 42 43 104 15 52 63 104 430 431 t 489 412 49 47 68 150 61 38 51 185 315 556

dyads_m5_shift2 (dyads_m5)
; oligos_6nt_mkv4_m4 versus dyads_m5; m=3/4; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.593343; --ccACCACCAc ; cor=; Ncor= a 0 0 849 627 3918 50 30 4141 38 14 3899 676 c 0 0 2252 2408 191 4112 4096 103 4058 4126 239 2169 g 0 0 690 543 129 102 115 126 110 85 188 692 t 0 0 681 894 234 208 231 102 266 247 146 935

oligos_7nt_mkv5_m1_shift2 (oligos_7nt_mkv5_m1)
; oligos_6nt_mkv4_m4 versus oligos_7nt_mkv5_m1; m=4/4; ncol2=11; w=0; offset=1; strand=D; shift=2; score=0.586311; --maAACACAAm ; cor=; Ncor= a 0 0 623 573 1802 1747 96 1720 81 1680 1767 555 c 0 0 544 437 1 22 1609 67 1586 57 20 518 g 0 0 384 449 28 54 61 58 114 51 39 350 t 0 0 329 421 49 57 114 35 99 92 54 457

One-to-n matrix alignment; reference matrix: dyads_m9_shift10 ; 34 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
dyads_m9_shift10 (dyads_m9)
; dyads_m9; m=0 (reference); ncol1=14; shift=10; ncol=24; ----------caAACACACACmca ; Alignment reference a 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 c 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 g 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 t 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431

dyads_m9_shift10 (dyads_m9)
; dyads_m9 versus dyads_m9; m=1/33; ncol2=14; w=0; offset=0; strand=D; shift=10; score= 1; ----------caAACACACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 c 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 g 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 t 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431

dyads_m7_shift10 (dyads_m7)
; dyads_m9 versus dyads_m7; m=2/33; ncol2=15; w=0; offset=0; strand=D; shift=10; score=0.867024; ----------camACACACACrCa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 c 0 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 g 0 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 t 0 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558

dyads_m6_shift10 (dyads_m6)
; dyads_m9 versus dyads_m6; m=3/33; ncol2=13; w=0; offset=0; strand=D; shift=10; score=0.845845; ----------camACACACAyac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 c 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 g 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 t 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0

dyads_m4_shift10 (dyads_m4)
; dyads_m9 versus dyads_m4; m=4/33; ncol2=13; w=0; offset=0; strand=D; shift=10; score=0.827828; ----------camACACACrCaC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 c 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 g 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 t 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0

oligos_7nt_mkv5_m5_shift10 (oligos_7nt_mkv5_m5)
; dyads_m9 versus oligos_7nt_mkv5_m5; m=5/33; ncol2=14; w=0; offset=0; strand=D; shift=10; score=0.82417; ----------caCACGCACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 c 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 g 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 t 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501

oligos_7nt_mkv5_m4_shift10 (oligos_7nt_mkv5_m4)
; dyads_m9 versus oligos_7nt_mkv5_m4; m=6/33; ncol2=13; w=0; offset=0; strand=D; shift=10; score=0.798816; ----------caCACAcACACac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 c 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 g 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 t 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0

positions_6nt_m1_shift9 (positions_6nt_m1)
; dyads_m9 versus positions_6nt_m1; m=7/33; ncol2=15; w=-1; offset=-1; strand=D; shift=9; score=0.736034; ---------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601

oligos_7nt_mkv5_m8_shift9 (oligos_7nt_mkv5_m8)
; dyads_m9 versus oligos_7nt_mkv5_m8; m=8/33; ncol2=16; w=-1; offset=-1; strand=D; shift=9; score=0.730385; ---------ACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 c 0 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 g 0 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 t 0 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929

oligos_6nt_mkv4_m2_shift8 (oligos_6nt_mkv4_m2)
; dyads_m9 versus oligos_6nt_mkv4_m2; m=9/33; ncol2=16; w=-2; offset=-2; strand=D; shift=8; score=0.717833; --------caCwCACAyACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 c 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 g 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 t 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421

oligos_6nt_mkv4_m5_rc_shift9 (oligos_6nt_mkv4_m5_rc)
; dyads_m9 versus oligos_6nt_mkv4_m5_rc; m=10/33; ncol2=16; w=-1; offset=-1; strand=R; shift=9; score=0.699925; ---------acAsACACrCACAsa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 c 0 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 g 0 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 t 0 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180

dyads_m10_shift9 (dyads_m10)
; dyads_m9 versus dyads_m10; m=11/33; ncol2=18; w=-1; offset=-1; strand=D; shift=9; score=0.666679; ---------ACACACACACACACr ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 c 0 0 0 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 g 0 0 0 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 t 0 0 0 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480

oligos_7nt_mkv5_m9_shift10 (oligos_7nt_mkv5_m9)
; dyads_m9 versus oligos_7nt_mkv5_m9; m=12/33; ncol2=13; w=0; offset=0; strand=D; shift=10; score=0.666533; ----------caCAsACACAAam- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 c 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 g 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 t 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0

positions_6nt_m8_shift8 (positions_6nt_m8)
; dyads_m9 versus positions_6nt_m8; m=13/33; ncol2=23; w=-2; offset=-2; strand=D; shift=8; score= 0.5152; --------caCACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 c 0 0 0 0 0 0 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 g 0 0 0 0 0 0 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 t 0 0 0 0 0 0 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365

positions_7nt_m2_shift10 (positions_7nt_m2)
; dyads_m9 versus positions_7nt_m2; m=14/33; ncol2=24; w=0; offset=0; strand=D; shift=10; score=0.510435; ----------cacACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 c 0 0 0 0 0 0 0 0 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 g 0 0 0 0 0 0 0 0 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 t 0 0 0 0 0 0 0 0 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84

positions_6nt_m10_shift8 (positions_6nt_m10)
; dyads_m9 versus positions_6nt_m10; m=15/33; ncol2=24; w=-2; offset=-2; strand=D; shift=8; score=0.507538; --------cacamACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 c 0 0 0 0 0 0 0 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 g 0 0 0 0 0 0 0 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 t 0 0 0 0 0 0 0 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49

positions_6nt_m9_shift7 (positions_6nt_m9)
; dyads_m9 versus positions_6nt_m9; m=16/33; ncol2=24; w=-3; offset=-3; strand=D; shift=7; score=0.505689; -------acaCacACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 c 0 0 0 0 0 0 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 g 0 0 0 0 0 0 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 t 0 0 0 0 0 0 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139

positions_6nt_m6_shift9 (positions_6nt_m6)
; dyads_m9 versus positions_6nt_m6; m=17/33; ncol2=24; w=-1; offset=-1; strand=D; shift=9; score=0.50548; ---------acamACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 c 0 0 0 0 0 0 0 0 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 g 0 0 0 0 0 0 0 0 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 t 0 0 0 0 0 0 0 0 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75

positions_7nt_m4_shift0 (positions_7nt_m4)
; dyads_m9 versus positions_7nt_m4; m=18/33; ncol2=24; w=-10; offset=-10; strand=D; shift=0; score=0.502794; caCACACACACACACACACACaca ; cor=; Ncor= a 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233

positions_7nt_m1_shift10 (positions_7nt_m1)
; dyads_m9 versus positions_7nt_m1; m=19/33; ncol2=24; w=0; offset=0; strand=D; shift=10; score=0.500735; ----------cacACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 c 0 0 0 0 0 0 0 0 0 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 g 0 0 0 0 0 0 0 0 0 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 t 0 0 0 0 0 0 0 0 0 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92

positions_7nt_m8_shift7 (positions_7nt_m8)
; dyads_m9 versus positions_7nt_m8; m=20/33; ncol2=24; w=-3; offset=-3; strand=D; shift=7; score=0.497163; -------acACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 c 0 0 0 0 0 0 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 g 0 0 0 0 0 0 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 t 0 0 0 0 0 0 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166

positions_6nt_m2_shift6 (positions_6nt_m2)
; dyads_m9 versus positions_6nt_m2; m=21/33; ncol2=24; w=-4; offset=-4; strand=D; shift=6; score=0.496152; ------caCACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 c 0 0 0 0 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 g 0 0 0 0 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 t 0 0 0 0 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138

dyads_m1_shift10 (dyads_m1)
; dyads_m9 versus dyads_m1; m=22/33; ncol2=24; w=0; offset=0; strand=D; shift=10; score=0.49394; ----------cacACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 c 0 0 0 0 0 0 0 0 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 g 0 0 0 0 0 0 0 0 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 t 0 0 0 0 0 0 0 0 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120

positions_7nt_m9_shift10 (positions_7nt_m9)
; dyads_m9 versus positions_7nt_m9; m=23/33; ncol2=24; w=0; offset=0; strand=D; shift=10; score=0.493646; ----------caCACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 c 0 0 0 0 0 0 0 0 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 g 0 0 0 0 0 0 0 0 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 t 0 0 0 0 0 0 0 0 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131

positions_7nt_m3_rc_shift10 (positions_7nt_m3_rc)
; dyads_m9 versus positions_7nt_m3_rc; m=24/33; ncol2=24; w=0; offset=0; strand=R; shift=10; score=0.493181; ----------cacACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 c 0 0 0 0 0 0 0 0 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 g 0 0 0 0 0 0 0 0 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 t 0 0 0 0 0 0 0 0 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96

positions_7nt_m7_shift0 (positions_7nt_m7)
; dyads_m9 versus positions_7nt_m7; m=25/33; ncol2=24; w=-10; offset=-10; strand=D; shift=0; score=0.491177; caCACACACACACACACACACaca ; cor=; Ncor= a 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231

positions_6nt_m3_rc_shift7 (positions_6nt_m3_rc)
; dyads_m9 versus positions_6nt_m3_rc; m=26/33; ncol2=24; w=-3; offset=-3; strand=R; shift=7; score=0.489615; -------mmmmmmaCACACrCACA ; cor=; Ncor= a 0 0 0 0 0 0 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 c 0 0 0 0 0 0 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 g 0 0 0 0 0 0 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 t 0 0 0 0 0 0 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66

positions_6nt_m4_shift1 (positions_6nt_m4)
; dyads_m9 versus positions_6nt_m4; m=27/33; ncol2=24; w=-9; offset=-9; strand=D; shift=1; score=0.487561; -acrCACACACACACACACACACa ; cor=; Ncor= a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646

positions_7nt_m6_shift9 (positions_7nt_m6)
; dyads_m9 versus positions_7nt_m6; m=28/33; ncol2=24; w=-1; offset=-1; strand=D; shift=9; score=0.486855; ---------acaCACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 c 0 0 0 0 0 0 0 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 g 0 0 0 0 0 0 0 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 t 0 0 0 0 0 0 0 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168

dyads_m8_shift0 (dyads_m8)
; dyads_m9 versus dyads_m8; m=29/33; ncol2=24; w=-10; offset=-10; strand=D; shift=0; score=0.486624; CaCACACACACACACACACACrCa ; cor=; Ncor= a 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988

positions_7nt_m10_shift9 (positions_7nt_m10)
; dyads_m9 versus positions_7nt_m10; m=30/33; ncol2=24; w=-1; offset=-1; strand=D; shift=9; score=0.486302; ---------acACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 c 0 0 0 0 0 0 0 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 g 0 0 0 0 0 0 0 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 t 0 0 0 0 0 0 0 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128

positions_6nt_m5_rc_shift9 (positions_6nt_m5_rc)
; dyads_m9 versus positions_6nt_m5_rc; m=31/33; ncol2=24; w=-1; offset=-1; strand=R; shift=9; score=0.485395; ---------acaCACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 c 0 0 0 0 0 0 0 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 g 0 0 0 0 0 0 0 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 t 0 0 0 0 0 0 0 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199

positions_7nt_m5_shift9 (positions_7nt_m5)
; dyads_m9 versus positions_7nt_m5; m=32/33; ncol2=24; w=-1; offset=-1; strand=D; shift=9; score=0.485093; ---------acaCACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 c 0 0 0 0 0 0 0 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 g 0 0 0 0 0 0 0 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 t 0 0 0 0 0 0 0 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172

positions_6nt_m7_shift0 (positions_6nt_m7)
; dyads_m9 versus positions_6nt_m7; m=33/33; ncol2=24; w=-10; offset=-10; strand=D; shift=0; score=0.482782; caCaCACACACACACACACACACa ; cor=; Ncor= a 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m10_shift6 (dyads_m10)				; dyads_m10; m=0 (reference); ncol1=18; shift=6; ncol=24; ------ACACACACACACACrCAC ; Alignment reference a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123
dyads_m10_shift6 (dyads_m10)				; dyads_m10 versus dyads_m10; m=1/33; ncol2=18; w=0; offset=0; strand=D; shift=6; score= 1; ------ACACACACACACACrCAC ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123
oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)				; dyads_m10 versus oligos_7nt_mkv5_m8; m=2/33; ncol2=16; w=0; offset=2; strand=D; shift=8; score=0.872418; --------ACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224
oligos_6nt_mkv4_m5_rc_shift6 (oligos_6nt_mkv4_m5_rc)				; dyads_m10 versus oligos_6nt_mkv4_m5_rc; m=3/33; ncol2=16; w=0; offset=0; strand=R; shift=6; score=0.802024; ------acAsACACrCACAsac-- ; cor=; Ncor= a 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 c 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 g 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 t 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0
oligos_6nt_mkv4_m2_shift7 (oligos_6nt_mkv4_m2)				; dyads_m10 versus oligos_6nt_mkv4_m2; m=4/33; ncol2=16; w=0; offset=1; strand=D; shift=7; score=0.79183; -------caCwCACAyACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 c 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 g 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 t 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0
dyads_m7_shift9 (dyads_m7)				; dyads_m10 versus dyads_m7; m=5/33; ncol2=15; w=0; offset=3; strand=D; shift=9; score=0.771763; ---------camACACACACrCac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 c 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 g 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 t 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517
positions_6nt_m8_shift1 (positions_6nt_m8)				; dyads_m10 versus positions_6nt_m8; m=6/33; ncol2=23; w=-5; offset=-5; strand=D; shift=1; score=0.770595; -caCACACACACACACACACACac ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027
positions_6nt_m1_shift8 (positions_6nt_m1)				; dyads_m10 versus positions_6nt_m1; m=7/33; ncol2=15; w=0; offset=2; strand=D; shift=8; score=0.769973; --------acACACrCACACrca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 c 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 g 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 t 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0
positions_7nt_m10_shift2 (positions_7nt_m10)				; dyads_m10 versus positions_7nt_m10; m=8/33; ncol2=24; w=-4; offset=-4; strand=D; shift=2; score=0.741032; --acACACACACACACACACACAC ; cor=; Ncor= a 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 c 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 g 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 t 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527
positions_7nt_m6_shift2 (positions_7nt_m6)				; dyads_m10 versus positions_7nt_m6; m=9/33; ncol2=24; w=-4; offset=-4; strand=D; shift=2; score=0.740579; --acaCACACACACACACACACAC ; cor=; Ncor= a 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 c 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 g 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 t 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658
positions_6nt_m5_rc_shift4 (positions_6nt_m5_rc)				; dyads_m10 versus positions_6nt_m5_rc; m=10/33; ncol2=24; w=-2; offset=-2; strand=R; shift=4; score=0.739993; ----acaCACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 c 0 0 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 g 0 0 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 t 0 0 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483
positions_7nt_m7_shift1 (positions_7nt_m7)				; dyads_m10 versus positions_7nt_m7; m=11/33; ncol2=24; w=-5; offset=-5; strand=D; shift=1; score=0.739082; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313
positions_7nt_m4_shift1 (positions_7nt_m4)				; dyads_m10 versus positions_7nt_m4; m=12/33; ncol2=24; w=-5; offset=-5; strand=D; shift=1; score=0.739009; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297
positions_6nt_m9_shift0 (positions_6nt_m9)				; dyads_m10 versus positions_6nt_m9; m=13/33; ncol2=24; w=-6; offset=-6; strand=D; shift=0; score=0.738978; acaCacACACACACACACACACac ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244
positions_7nt_m8_shift2 (positions_7nt_m8)				; dyads_m10 versus positions_7nt_m8; m=14/33; ncol2=24; w=-4; offset=-4; strand=D; shift=2; score=0.737862; --acACACACACACACACACACAC ; cor=; Ncor= a 0 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 c 0 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 g 0 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 t 0 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288
dyads_m8_shift1 (dyads_m8)				; dyads_m10 versus dyads_m8; m=15/33; ncol2=24; w=-5; offset=-5; strand=D; shift=1; score=0.737754; -CaCACACACACACACACACACrC ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049
positions_6nt_m2_shift3 (positions_6nt_m2)				; dyads_m10 versus positions_6nt_m2; m=16/33; ncol2=24; w=-3; offset=-3; strand=D; shift=3; score=0.737685; ---caCACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 c 0 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 g 0 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 t 0 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006
dyads_m1_shift1 (dyads_m1)				; dyads_m10 versus dyads_m1; m=17/33; ncol2=24; w=-5; offset=-5; strand=D; shift=1; score=0.737525; -cacACACACACACACACACACaC ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034
positions_6nt_m6_shift2 (positions_6nt_m6)				; dyads_m10 versus positions_6nt_m6; m=18/33; ncol2=24; w=-4; offset=-4; strand=D; shift=2; score=0.737063; --acamACACACACACACACACAC ; cor=; Ncor= a 0 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 c 0 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 g 0 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 t 0 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717
positions_6nt_m4_shift0 (positions_6nt_m4)				; dyads_m10 versus positions_6nt_m4; m=19/33; ncol2=24; w=-6; offset=-6; strand=D; shift=0; score=0.736967; acrCACACACACACACACACACac ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762
positions_6nt_m10_shift1 (positions_6nt_m10)				; dyads_m10 versus positions_6nt_m10; m=20/33; ncol2=24; w=-5; offset=-5; strand=D; shift=1; score=0.736308; -cacamACACACACACACACACAC ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908
positions_7nt_m2_shift5 (positions_7nt_m2)				; dyads_m10 versus positions_7nt_m2; m=21/33; ncol2=24; w=-1; offset=-1; strand=D; shift=5; score=0.736123; -----cacACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 c 0 0 0 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 g 0 0 0 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 t 0 0 0 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509
positions_7nt_m3_rc_shift5 (positions_7nt_m3_rc)				; dyads_m10 versus positions_7nt_m3_rc; m=22/33; ncol2=24; w=-1; offset=-1; strand=R; shift=5; score=0.735559; -----cacACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 c 0 0 0 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 g 0 0 0 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 t 0 0 0 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564
positions_7nt_m5_shift0 (positions_7nt_m5)				; dyads_m10 versus positions_7nt_m5; m=23/33; ncol2=24; w=-6; offset=-6; strand=D; shift=0; score=0.73514; acaCACACACACACACACACACac ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250
positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)				; dyads_m10 versus positions_6nt_m3_rc; m=24/33; ncol2=24; w=-6; offset=-6; strand=R; shift=0; score=0.734954; mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706
positions_7nt_m9_shift3 (positions_7nt_m9)				; dyads_m10 versus positions_7nt_m9; m=25/33; ncol2=24; w=-3; offset=-3; strand=D; shift=3; score=0.734879; ---caCACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 c 0 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 g 0 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 t 0 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783
positions_7nt_m1_shift1 (positions_7nt_m1)				; dyads_m10 versus positions_7nt_m1; m=26/33; ncol2=24; w=-5; offset=-5; strand=D; shift=1; score=0.734497; -cacACACACACACACACACACAC ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882
positions_6nt_m7_shift1 (positions_6nt_m7)				; dyads_m10 versus positions_6nt_m7; m=27/33; ncol2=24; w=-5; offset=-5; strand=D; shift=1; score=0.734244; -caCaCACACACACACACACACAC ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139
oligos_7nt_mkv5_m4_shift9 (oligos_7nt_mkv5_m4)				; dyads_m10 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=3; strand=D; shift=9; score=0.701278; ---------caCACAcACACac-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 c 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 g 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 t 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0
dyads_m9_shift7 (dyads_m9)				; dyads_m10 versus dyads_m9; m=29/33; ncol2=14; w=0; offset=1; strand=D; shift=7; score=0.666679; -------caAACACACACmca--- ; cor=; Ncor= a 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 c 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 g 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 t 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0
oligos_7nt_mkv5_m5_shift9 (oligos_7nt_mkv5_m5)				; dyads_m10 versus oligos_7nt_mkv5_m5; m=30/33; ncol2=14; w=0; offset=3; strand=D; shift=9; score=0.658409; ---------caCACGCACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 c 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 g 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 t 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0
dyads_m4_shift11 (dyads_m4)				; dyads_m10 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=5; strand=D; shift=11; score=0.648784; -----------camACACACrCaC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 c 0 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 g 0 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 t 0 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355
dyads_m6_shift7 (dyads_m6)				; dyads_m10 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=1; strand=D; shift=7; score=0.638382; -------camACACACAyac---- ; cor=; Ncor= a 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 c 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 g 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 t 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0
oligos_7nt_mkv5_m9_shift9 (oligos_7nt_mkv5_m9)				; dyads_m10 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=3; strand=D; shift=9; score=0.563617; ---------caCAsACACAAam-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 c 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 g 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 t 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m6_shift1 (positions_6nt_m6)				; positions_6nt_m6; m=0 (reference); ncol1=24; shift=1; ncol=25; -acamACACACACACACACACACac ; Alignment reference a 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141
positions_6nt_m6_shift1 (positions_6nt_m6)				; positions_6nt_m6 versus positions_6nt_m6; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -acamACACACACACACACACACac ; cor=; Ncor= a 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141
positions_7nt_m10_shift1 (positions_7nt_m10)				; positions_6nt_m6 versus positions_7nt_m10; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991812; -acACACACACACACACACACACaC ; cor=; Ncor= a 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 c 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 g 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 t 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221
positions_7nt_m6_shift1 (positions_7nt_m6)				; positions_6nt_m6 versus positions_7nt_m6; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991185; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 c 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 g 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 t 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314
positions_7nt_m5_shift1 (positions_7nt_m5)				; positions_6nt_m6 versus positions_7nt_m5; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990352; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250
positions_7nt_m8_shift1 (positions_7nt_m8)				; positions_6nt_m6 versus positions_7nt_m8; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.986924; -acACACACACACACACACACACac ; cor=; Ncor= a 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444
positions_6nt_m5_rc_shift1 (positions_6nt_m5_rc)				; positions_6nt_m6 versus positions_6nt_m5_rc; m=6/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.986849; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 c 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 g 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 t 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346
positions_6nt_m4_shift1 (positions_6nt_m4)				; positions_6nt_m6 versus positions_6nt_m4; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984737; -acrCACACACACACACACACACac ; cor=; Ncor= a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762
positions_6nt_m9_shift1 (positions_6nt_m9)				; positions_6nt_m6 versus positions_6nt_m9; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.977112; -acaCacACACACACACACACACac ; cor=; Ncor= a 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244
positions_6nt_m8_shift2 (positions_6nt_m8)				; positions_6nt_m6 versus positions_6nt_m8; m=9/33; ncol2=23; w=0; offset=1; strand=D; shift=2; score=0.944443; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027
positions_6nt_m3_rc_shift1 (positions_6nt_m3_rc)				; positions_6nt_m6 versus positions_6nt_m3_rc; m=10/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.932795; -mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706
positions_6nt_m10_shift0 (positions_6nt_m10)				; positions_6nt_m6 versus positions_6nt_m10; m=11/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.918987; cacamACACACACACACACACACa- ; cor=; Ncor= a 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 0 c 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 0 g 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 0 t 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785 0
positions_7nt_m1_shift2 (positions_7nt_m1)				; positions_6nt_m6 versus positions_7nt_m1; m=12/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.912482; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 c 0 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 g 0 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 t 0 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882
positions_7nt_m2_shift2 (positions_7nt_m2)				; positions_6nt_m6 versus positions_7nt_m2; m=13/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.912357; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 c 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 g 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 t 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970
dyads_m1_shift2 (dyads_m1)				; positions_6nt_m6 versus dyads_m1; m=14/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.912035; --cacACACACACACACACACACaC ; cor=; Ncor= a 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034
positions_7nt_m3_rc_shift2 (positions_7nt_m3_rc)				; positions_6nt_m6 versus positions_7nt_m3_rc; m=15/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.910612; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 c 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 g 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 t 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963
positions_7nt_m7_shift2 (positions_7nt_m7)				; positions_6nt_m6 versus positions_7nt_m7; m=16/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910028; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313
positions_7nt_m9_shift2 (positions_7nt_m9)				; positions_6nt_m6 versus positions_7nt_m9; m=17/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.908884; --caCACACACACACACACACACAC ; cor=; Ncor= a 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 c 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 g 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 t 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316
positions_6nt_m2_shift2 (positions_6nt_m2)				; positions_6nt_m6 versus positions_6nt_m2; m=18/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.907272; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256
positions_7nt_m4_shift2 (positions_7nt_m4)				; positions_6nt_m6 versus positions_7nt_m4; m=19/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.906854; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297
positions_6nt_m7_shift2 (positions_6nt_m7)				; positions_6nt_m6 versus positions_6nt_m7; m=20/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.906723; --caCaCACACACACACACACACAC ; cor=; Ncor= a 0 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 c 0 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 g 0 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 t 0 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139
dyads_m8_shift2 (dyads_m8)				; positions_6nt_m6 versus dyads_m8; m=21/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.906305; --CaCACACACACACACACACACrC ; cor=; Ncor= a 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049
dyads_m10_shift5 (dyads_m10)				; positions_6nt_m6 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=4; strand=D; shift=5; score=0.737063; -----ACACACACACACACrCAC-- ; cor=; Ncor= a 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 0 c 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 0 g 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 0 t 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0 0
oligos_7nt_mkv5_m8_shift5 (oligos_7nt_mkv5_m8)				; positions_6nt_m6 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=4; strand=D; shift=5; score=0.662311; -----ACACACACACACACAC---- ; cor=; Ncor= a 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 0 0 c 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 0 0 g 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 0 0 t 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0 0 0
oligos_6nt_mkv4_m2_shift4 (oligos_6nt_mkv4_m2)				; positions_6nt_m6 versus oligos_6nt_mkv4_m2; m=24/33; ncol2=16; w=0; offset=3; strand=D; shift=4; score=0.602774; ----caCwCACAyACACmca----- ; cor=; Ncor= a 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 0 0 0 0 c 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 0 0 0 0 g 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 0 0 0 0 t 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0 0 0 0 0
oligos_6nt_mkv4_m5_rc_shift5 (oligos_6nt_mkv4_m5_rc)				; positions_6nt_m6 versus oligos_6nt_mkv4_m5_rc; m=25/33; ncol2=16; w=0; offset=4; strand=R; shift=5; score=0.597911; -----acAsACACrCACAsac---- ; cor=; Ncor= a 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 0 0 c 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 0 0 g 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 0 0 t 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0 0 0
dyads_m7_shift2 (dyads_m7)				; positions_6nt_m6 versus dyads_m7; m=26/33; ncol2=15; w=0; offset=1; strand=D; shift=2; score=0.569307; --camACACACACrCac-------- ; cor=; Ncor= a 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 0 c 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 0 g 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 0 t 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0 0
positions_6nt_m1_shift9 (positions_6nt_m1)				; positions_6nt_m6 versus positions_6nt_m1; m=27/33; ncol2=15; w=0; offset=8; strand=D; shift=9; score=0.556616; ---------acACACrCACACrca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 c 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 g 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 t 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0
oligos_7nt_mkv5_m4_shift12 (oligos_7nt_mkv5_m4)				; positions_6nt_m6 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=11; strand=D; shift=12; score=0.526805; ------------caCACAcACACac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 c 0 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 g 0 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 t 0 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279
dyads_m9_shift2 (dyads_m9)				; positions_6nt_m6 versus dyads_m9; m=29/33; ncol2=14; w=0; offset=1; strand=D; shift=2; score=0.50548; --caAACACACACmca--------- ; cor=; Ncor= a 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 0 0 c 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 0 0 g 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 0 0 t 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0 0 0
dyads_m6_shift2 (dyads_m6)				; positions_6nt_m6 versus dyads_m6; m=30/33; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.500773; --camACACACAyac---------- ; cor=; Ncor= a 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 0 0 c 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 0 0 g 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 0 0 t 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0 0 0
dyads_m4_shift2 (dyads_m4)				; positions_6nt_m6 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.484611; --camACACACrCaC---------- ; cor=; Ncor= a 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 0 0 c 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 0 0 g 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 0 0 t 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m5_shift10 (oligos_7nt_mkv5_m5)				; positions_6nt_m6 versus oligos_7nt_mkv5_m5; m=32/33; ncol2=14; w=0; offset=9; strand=D; shift=10; score=0.482922; ----------caCACGCACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 c 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 g 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 t 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0
oligos_7nt_mkv5_m9_shift8 (oligos_7nt_mkv5_m9)				; positions_6nt_m6 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=7; strand=D; shift=8; score=0.434035; --------caCAsACACAAam---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 0 0 c 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 0 0 g 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 0 0 t 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m4_shift1 (positions_6nt_m4)				; positions_6nt_m4; m=0 (reference); ncol1=24; shift=1; ncol=25; -acrCACACACACACACACACACac ; Alignment reference a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762
positions_6nt_m4_shift1 (positions_6nt_m4)				; positions_6nt_m4 versus positions_6nt_m4; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -acrCACACACACACACACACACac ; cor=; Ncor= a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762
positions_6nt_m5_rc_shift1 (positions_6nt_m5_rc)				; positions_6nt_m4 versus positions_6nt_m5_rc; m=2/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.993427; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 c 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 g 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 t 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346
positions_7nt_m5_shift1 (positions_7nt_m5)				; positions_6nt_m4 versus positions_7nt_m5; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990877; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250
positions_7nt_m6_shift1 (positions_7nt_m6)				; positions_6nt_m4 versus positions_7nt_m6; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989443; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 c 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 g 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 t 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314
positions_7nt_m8_shift1 (positions_7nt_m8)				; positions_6nt_m4 versus positions_7nt_m8; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987465; -acACACACACACACACACACACac ; cor=; Ncor= a 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444
positions_7nt_m10_shift1 (positions_7nt_m10)				; positions_6nt_m4 versus positions_7nt_m10; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.985863; -acACACACACACACACACACACaC ; cor=; Ncor= a 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 c 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 g 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 t 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221
positions_6nt_m6_shift1 (positions_6nt_m6)				; positions_6nt_m4 versus positions_6nt_m6; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984737; -acamACACACACACACACACACac ; cor=; Ncor= a 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141
positions_6nt_m9_shift1 (positions_6nt_m9)				; positions_6nt_m4 versus positions_6nt_m9; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.974739; -acaCacACACACACACACACACac ; cor=; Ncor= a 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244
positions_6nt_m8_shift2 (positions_6nt_m8)				; positions_6nt_m4 versus positions_6nt_m8; m=9/33; ncol2=23; w=0; offset=1; strand=D; shift=2; score=0.943956; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027
positions_6nt_m7_shift0 (positions_6nt_m7)				; positions_6nt_m4 versus positions_6nt_m7; m=10/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.914283; caCaCACACACACACACACACACa- ; cor=; Ncor= a 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 0 c 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 0 g 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 0 t 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062 0
positions_7nt_m7_shift2 (positions_7nt_m7)				; positions_6nt_m4 versus positions_7nt_m7; m=11/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.913766; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313
dyads_m8_shift2 (dyads_m8)				; positions_6nt_m4 versus dyads_m8; m=12/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.912271; --CaCACACACACACACACACACrC ; cor=; Ncor= a 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049
positions_6nt_m3_rc_shift1 (positions_6nt_m3_rc)				; positions_6nt_m4 versus positions_6nt_m3_rc; m=13/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.911422; -mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706
positions_6nt_m2_shift2 (positions_6nt_m2)				; positions_6nt_m4 versus positions_6nt_m2; m=14/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.911324; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256
positions_7nt_m1_shift0 (positions_7nt_m1)				; positions_6nt_m4 versus positions_7nt_m1; m=15/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910878; cacACACACACACACACACACACa- ; cor=; Ncor= a 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 0 c 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 0 g 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 0 t 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835 0
positions_7nt_m4_shift2 (positions_7nt_m4)				; positions_6nt_m4 versus positions_7nt_m4; m=16/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910866; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297
positions_7nt_m9_shift0 (positions_7nt_m9)				; positions_6nt_m4 versus positions_7nt_m9; m=17/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910422; caCACACACACACACACACACACa- ; cor=; Ncor= a 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 0 c 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 0 g 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 0 t 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216 0
dyads_m1_shift2 (dyads_m1)				; positions_6nt_m4 versus dyads_m1; m=18/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.909086; --cacACACACACACACACACACaC ; cor=; Ncor= a 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034
positions_7nt_m3_rc_shift0 (positions_7nt_m3_rc)				; positions_6nt_m4 versus positions_7nt_m3_rc; m=19/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.90771; cacACACACACACACACACACACa- ; cor=; Ncor= a 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 0 c 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 0 g 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 0 t 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888 0
positions_7nt_m2_shift0 (positions_7nt_m2)				; positions_6nt_m4 versus positions_7nt_m2; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.907128; cacACACACACACACACACACACa- ; cor=; Ncor= a 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 0 c 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 0 g 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 0 t 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894 0
positions_6nt_m10_shift0 (positions_6nt_m10)				; positions_6nt_m4 versus positions_6nt_m10; m=21/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.903193; cacamACACACACACACACACACa- ; cor=; Ncor= a 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 0 c 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 0 g 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 0 t 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785 0
dyads_m10_shift7 (dyads_m10)				; positions_6nt_m4 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=6; strand=D; shift=7; score=0.736967; -------ACACACACACACACrCAC ; cor=; Ncor= a 0 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 c 0 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 g 0 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 t 0 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123
oligos_7nt_mkv5_m8_shift9 (oligos_7nt_mkv5_m8)				; positions_6nt_m4 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=8; strand=D; shift=9; score=0.663169; ---------ACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 c 0 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 g 0 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 t 0 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224
oligos_6nt_mkv4_m5_rc_shift9 (oligos_6nt_mkv4_m5_rc)				; positions_6nt_m4 versus oligos_6nt_mkv4_m5_rc; m=24/33; ncol2=16; w=0; offset=8; strand=R; shift=9; score=0.60506; ---------acAsACACrCACAsac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 c 0 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 g 0 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 t 0 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214
oligos_6nt_mkv4_m2_shift2 (oligos_6nt_mkv4_m2)				; positions_6nt_m4 versus oligos_6nt_mkv4_m2; m=25/33; ncol2=16; w=0; offset=1; strand=D; shift=2; score=0.601451; --caCwCACAyACACmca------- ; cor=; Ncor= a 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 0 0 0 0 0 0 c 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 0 0 0 0 0 0 g 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 0 0 0 0 0 0 t 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0 0 0 0 0 0 0
positions_6nt_m1_shift9 (positions_6nt_m1)				; positions_6nt_m4 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=8; strand=D; shift=9; score=0.560786; ---------acACACrCACACrca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 c 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 g 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 t 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0
dyads_m7_shift8 (dyads_m7)				; positions_6nt_m4 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=7; strand=D; shift=8; score=0.557893; --------camACACACACrCac-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 c 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 g 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 t 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0
oligos_7nt_mkv5_m4_shift10 (oligos_7nt_mkv5_m4)				; positions_6nt_m4 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=9; strand=D; shift=10; score=0.52993; ----------caCACAcACACac-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 c 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 g 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 t 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0
oligos_7nt_mkv5_m5_shift10 (oligos_7nt_mkv5_m5)				; positions_6nt_m4 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=9; strand=D; shift=10; score=0.490035; ----------caCACGCACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 c 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 g 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 t 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0
dyads_m9_shift10 (dyads_m9)				; positions_6nt_m4 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=9; strand=D; shift=10; score=0.487561; ----------caAACACACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 c 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 g 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 t 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0
dyads_m6_shift12 (dyads_m6)				; positions_6nt_m4 versus dyads_m6; m=31/33; ncol2=13; w=0; offset=11; strand=D; shift=12; score=0.472149; ------------camACACACAyac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 c 0 0 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 g 0 0 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 t 0 0 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355
dyads_m4_shift8 (dyads_m4)				; positions_6nt_m4 versus dyads_m4; m=32/33; ncol2=13; w=0; offset=7; strand=D; shift=8; score=0.470146; --------camACACACrCaC---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 c 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 g 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 t 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0
oligos_7nt_mkv5_m9_shift12 (oligos_7nt_mkv5_m9)				; positions_6nt_m4 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=11; strand=D; shift=12; score=0.437756; ------------caCAsACACAAam ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 c 0 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 g 0 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 t 0 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m9_shift1 (positions_7nt_m9)				; positions_7nt_m9; m=0 (reference); ncol1=24; shift=1; ncol=25; -caCACACACACACACACACACACa ; Alignment reference a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216
positions_7nt_m9_shift1 (positions_7nt_m9)				; positions_7nt_m9 versus positions_7nt_m9; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216
positions_7nt_m2_shift1 (positions_7nt_m2)				; positions_7nt_m9 versus positions_7nt_m2; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.996994; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894
positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)				; positions_7nt_m9 versus positions_7nt_m3_rc; m=3/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.993812; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888
positions_7nt_m7_shift1 (positions_7nt_m7)				; positions_7nt_m9 versus positions_7nt_m7; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 0.9912; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231
positions_6nt_m7_shift1 (positions_6nt_m7)				; positions_7nt_m9 versus positions_6nt_m7; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991115; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062
dyads_m1_shift1 (dyads_m1)				; positions_7nt_m9 versus dyads_m1; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990714; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002
positions_7nt_m4_shift1 (positions_7nt_m4)				; positions_7nt_m9 versus positions_7nt_m4; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989389; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233
positions_7nt_m1_shift1 (positions_7nt_m1)				; positions_7nt_m9 versus positions_7nt_m1; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989155; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835
dyads_m8_shift1 (dyads_m8)				; positions_7nt_m9 versus dyads_m8; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987385; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988
positions_6nt_m2_shift1 (positions_6nt_m2)				; positions_7nt_m9 versus positions_6nt_m2; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987055; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111
positions_6nt_m10_shift1 (positions_6nt_m10)				; positions_7nt_m9 versus positions_6nt_m10; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984224; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785
positions_6nt_m8_shift1 (positions_6nt_m8)				; positions_7nt_m9 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.946372; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0
positions_7nt_m5_shift2 (positions_7nt_m5)				; positions_7nt_m9 versus positions_7nt_m5; m=13/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score= 0.9162; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 c 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 g 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 t 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994
positions_7nt_m8_shift0 (positions_7nt_m8)				; positions_7nt_m9 versus positions_7nt_m8; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.912694; acACACACACACACACACACACac- ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 0 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 0 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 0 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444 0
positions_7nt_m10_shift0 (positions_7nt_m10)				; positions_7nt_m9 versus positions_7nt_m10; m=15/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.91106; acACACACACACACACACACACaC- ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 0 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 0 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 0 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221 0
positions_7nt_m6_shift2 (positions_7nt_m6)				; positions_7nt_m9 versus positions_7nt_m6; m=16/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910989; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 c 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 g 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 t 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108
positions_6nt_m4_shift2 (positions_6nt_m4)				; positions_7nt_m9 versus positions_6nt_m4; m=17/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910422; --acrCACACACACACACACACACa ; cor=; Ncor= a 0 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 c 0 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 g 0 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 t 0 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646
positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)				; positions_7nt_m9 versus positions_6nt_m5_rc; m=18/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.910175; acaCACACACACACACACACACac- ; cor=; Ncor= a 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 0 c 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 0 g 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 0 t 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346 0
positions_6nt_m6_shift0 (positions_6nt_m6)				; positions_7nt_m9 versus positions_6nt_m6; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908884; acamACACACACACACACACACac- ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 0 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 0 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 0 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141 0
positions_6nt_m9_shift0 (positions_6nt_m9)				; positions_7nt_m9 versus positions_6nt_m9; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.903082; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0
positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)				; positions_7nt_m9 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.867086; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0
dyads_m10_shift4 (dyads_m10)				; positions_7nt_m9 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=3; strand=D; shift=4; score=0.734879; ----ACACACACACACACrCAC--- ; cor=; Ncor= a 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 0 0 c 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 0 0 g 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 0 0 t 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0 0 0
oligos_7nt_mkv5_m8_shift6 (oligos_7nt_mkv5_m8)				; positions_7nt_m9 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=5; strand=D; shift=6; score=0.656961; ------ACACACACACACACAC--- ; cor=; Ncor= a 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 0 c 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 0 g 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 0 t 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0 0
oligos_6nt_mkv4_m5_rc_shift4 (oligos_6nt_mkv4_m5_rc)				; positions_7nt_m9 versus oligos_6nt_mkv4_m5_rc; m=24/33; ncol2=16; w=0; offset=3; strand=R; shift=4; score=0.608195; ----acAsACACrCACAsac----- ; cor=; Ncor= a 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 0 0 0 c 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 0 0 0 g 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 0 0 0 t 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0 0 0 0
oligos_6nt_mkv4_m2_shift9 (oligos_6nt_mkv4_m2)				; positions_7nt_m9 versus oligos_6nt_mkv4_m2; m=25/33; ncol2=16; w=0; offset=8; strand=D; shift=9; score=0.592441; ---------caCwCACAyACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 c 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 g 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 t 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421
dyads_m7_shift1 (dyads_m7)				; positions_7nt_m9 versus dyads_m7; m=26/33; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.570422; -camACACACACrCac--------- ; cor=; Ncor= a 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 0 0 c 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 0 0 g 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 0 0 t 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0 0 0
positions_6nt_m1_shift6 (positions_6nt_m1)				; positions_7nt_m9 versus positions_6nt_m1; m=27/33; ncol2=15; w=0; offset=5; strand=D; shift=6; score=0.566387; ------acACACrCACACrca---- ; cor=; Ncor= a 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 0 0 0 c 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 0 0 0 g 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 0 0 0 t 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0 0 0 0
oligos_7nt_mkv5_m4_shift11 (oligos_7nt_mkv5_m4)				; positions_7nt_m9 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.522281; -----------caCACAcACACac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 c 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 g 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 t 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0
oligos_7nt_mkv5_m5_shift7 (oligos_7nt_mkv5_m5)				; positions_7nt_m9 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=6; strand=D; shift=7; score=0.501169; -------caCACGCACACmca---- ; cor=; Ncor= a 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 0 c 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 0 g 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 0 t 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0 0
dyads_m9_shift1 (dyads_m9)				; positions_7nt_m9 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.493646; -caAACACACACmca---------- ; cor=; Ncor= a 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 0 0 0 c 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 0 0 0 g 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 0 0 0 t 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0 0 0 0
dyads_m4_shift3 (dyads_m4)				; positions_7nt_m9 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=2; strand=D; shift=3; score=0.484641; ---camACACACrCaC--------- ; cor=; Ncor= a 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 0 c 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 0 g 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 0 t 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0 0
dyads_m6_shift9 (dyads_m6)				; positions_7nt_m9 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=8; strand=D; shift=9; score=0.47542; ---------camACACACAyac--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 c 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 g 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 t 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0
oligos_7nt_mkv5_m9_shift9 (oligos_7nt_mkv5_m9)				; positions_7nt_m9 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=8; strand=D; shift=9; score=0.420789; ---------caCAsACACAAam--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 0 c 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 0 g 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 0 t 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m7_shift0 (oligos_7nt_mkv5_m7)				; oligos_7nt_mkv5_m7; m=0 (reference); ncol1=14; shift=0; ncol=14; ctCTCTyTCTCTCt ; Alignment reference a 503 585 161 215 120 150 166 109 121 141 154 241 435 595 c 4268 736 5741 282 5809 301 4049 266 5870 243 5779 444 4387 960 g 471 820 143 252 136 244 156 293 76 286 147 332 524 719 t 1206 4307 403 5699 383 5753 2077 5780 381 5778 368 5431 1102 4174
oligos_7nt_mkv5_m7_shift0 (oligos_7nt_mkv5_m7)				; oligos_7nt_mkv5_m7 versus oligos_7nt_mkv5_m7; m=1/3; ncol2=14; w=0; offset=0; strand=D; shift=0; score= 1; ctCTCTyTCTCTCt ; cor=; Ncor= a 503 585 161 215 120 150 166 109 121 141 154 241 435 595 c 4268 736 5741 282 5809 301 4049 266 5870 243 5779 444 4387 960 g 471 820 143 252 136 244 156 293 76 286 147 332 524 719 t 1206 4307 403 5699 383 5753 2077 5780 381 5778 368 5431 1102 4174
dyads_m2_rc_shift0 (dyads_m2_rc)				; oligos_7nt_mkv5_m7 versus dyads_m2_rc; m=2/3; ncol2=17; w=0; offset=0; strand=R; shift=0; score=0.80743; CtCTCTCTCTCTCT ; cor=; Ncor= a 534 757 286 458 210 341 149 281 153 314 167 396 205 545 c 5329 751 6323 380 6662 311 6823 285 6812 285 6791 275 6628 387 g 526 1020 274 633 200 571 134 520 148 521 166 569 226 610 t 1251 5112 757 6169 568 6417 534 6554 527 6520 516 6400 581 6098
oligos_7nt_mkv5_m10_rc_shift4 (oligos_7nt_mkv5_m10_rc)				; oligos_7nt_mkv5_m7 versus oligos_7nt_mkv5_m10_rc; m=3/3; ncol2=11; w=0; offset=4; strand=R; shift=4; score=0.470951; ----cyGTCTCTGy ; cor=; Ncor= a 0 0 0 0 272 236 65 39 79 25 69 20 55 227 c 0 0 0 0 665 487 267 85 1613 59 1666 55 207 496 g 0 0 0 0 434 348 1348 80 37 93 33 60 1422 367 t 0 0 0 0 432 732 123 1599 74 1626 35 1668 119 713

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m8_shift1 (positions_7nt_m8)				; positions_7nt_m8; m=0 (reference); ncol1=24; shift=1; ncol=25; -acACACACACACACACACACACac ; Alignment reference a 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444
positions_7nt_m8_shift1 (positions_7nt_m8)				; positions_7nt_m8 versus positions_7nt_m8; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -acACACACACACACACACACACac ; cor=; Ncor= a 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444
positions_7nt_m5_shift1 (positions_7nt_m5)				; positions_7nt_m8 versus positions_7nt_m5; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.988633; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250
positions_6nt_m5_rc_shift1 (positions_6nt_m5_rc)				; positions_7nt_m8 versus positions_6nt_m5_rc; m=3/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.988383; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 c 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 g 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 t 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346
positions_6nt_m9_shift1 (positions_6nt_m9)				; positions_7nt_m8 versus positions_6nt_m9; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987893; -acaCacACACACACACACACACac ; cor=; Ncor= a 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244
positions_7nt_m10_shift1 (positions_7nt_m10)				; positions_7nt_m8 versus positions_7nt_m10; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987749; -acACACACACACACACACACACaC ; cor=; Ncor= a 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 c 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 g 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 t 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221
positions_6nt_m4_shift1 (positions_6nt_m4)				; positions_7nt_m8 versus positions_6nt_m4; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987465; -acrCACACACACACACACACACac ; cor=; Ncor= a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762
positions_7nt_m6_shift1 (positions_7nt_m6)				; positions_7nt_m8 versus positions_7nt_m6; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987064; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 c 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 g 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 t 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314
positions_6nt_m6_shift1 (positions_6nt_m6)				; positions_7nt_m8 versus positions_6nt_m6; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.986924; -acamACACACACACACACACACac ; cor=; Ncor= a 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141
positions_6nt_m8_shift2 (positions_6nt_m8)				; positions_7nt_m8 versus positions_6nt_m8; m=9/33; ncol2=23; w=0; offset=1; strand=D; shift=2; score=0.948782; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027
positions_6nt_m3_rc_shift1 (positions_6nt_m3_rc)				; positions_7nt_m8 versus positions_6nt_m3_rc; m=10/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.945829; -mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706
positions_7nt_m9_shift2 (positions_7nt_m9)				; positions_7nt_m8 versus positions_7nt_m9; m=11/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.912694; --caCACACACACACACACACACAC ; cor=; Ncor= a 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 c 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 g 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 t 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316
positions_7nt_m2_shift2 (positions_7nt_m2)				; positions_7nt_m8 versus positions_7nt_m2; m=12/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.911648; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 c 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 g 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 t 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970
positions_6nt_m2_shift2 (positions_6nt_m2)				; positions_7nt_m8 versus positions_6nt_m2; m=13/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.911396; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256
positions_7nt_m7_shift2 (positions_7nt_m7)				; positions_7nt_m8 versus positions_7nt_m7; m=14/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.911123; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313
dyads_m1_shift2 (dyads_m1)				; positions_7nt_m8 versus dyads_m1; m=15/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910501; --cacACACACACACACACACACaC ; cor=; Ncor= a 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034
positions_6nt_m7_shift0 (positions_6nt_m7)				; positions_7nt_m8 versus positions_6nt_m7; m=16/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910129; caCaCACACACACACACACACACa- ; cor=; Ncor= a 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 0 c 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 0 g 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 0 t 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062 0
positions_7nt_m4_shift2 (positions_7nt_m4)				; positions_7nt_m8 versus positions_7nt_m4; m=17/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.909686; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297
positions_7nt_m1_shift0 (positions_7nt_m1)				; positions_7nt_m8 versus positions_7nt_m1; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.909199; cacACACACACACACACACACACa- ; cor=; Ncor= a 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 0 c 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 0 g 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 0 t 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835 0
dyads_m8_shift2 (dyads_m8)				; positions_7nt_m8 versus dyads_m8; m=19/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.908447; --CaCACACACACACACACACACrC ; cor=; Ncor= a 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049
positions_7nt_m3_rc_shift2 (positions_7nt_m3_rc)				; positions_7nt_m8 versus positions_7nt_m3_rc; m=20/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.90777; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 c 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 g 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 t 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963
positions_6nt_m10_shift2 (positions_6nt_m10)				; positions_7nt_m8 versus positions_6nt_m10; m=21/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.905922; --cacamACACACACACACACACAC ; cor=; Ncor= a 0 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 c 0 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 g 0 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 t 0 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908
dyads_m10_shift5 (dyads_m10)				; positions_7nt_m8 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=4; strand=D; shift=5; score=0.737862; -----ACACACACACACACrCAC-- ; cor=; Ncor= a 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 0 c 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 0 g 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 0 t 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0 0
oligos_7nt_mkv5_m8_shift9 (oligos_7nt_mkv5_m8)				; positions_7nt_m8 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=8; strand=D; shift=9; score=0.658481; ---------ACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 c 0 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 g 0 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 t 0 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224
oligos_6nt_mkv4_m5_rc_shift5 (oligos_6nt_mkv4_m5_rc)				; positions_7nt_m8 versus oligos_6nt_mkv4_m5_rc; m=24/33; ncol2=16; w=0; offset=4; strand=R; shift=5; score=0.607303; -----acAsACACrCACAsac---- ; cor=; Ncor= a 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 0 0 c 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 0 0 g 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 0 0 t 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0 0 0
oligos_6nt_mkv4_m2_shift8 (oligos_6nt_mkv4_m2)				; positions_7nt_m8 versus oligos_6nt_mkv4_m2; m=25/33; ncol2=16; w=0; offset=7; strand=D; shift=8; score=0.591419; --------caCwCACAyACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 c 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 g 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 t 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0
dyads_m7_shift2 (dyads_m7)				; positions_7nt_m8 versus dyads_m7; m=26/33; ncol2=15; w=0; offset=1; strand=D; shift=2; score=0.568594; --camACACACACrCac-------- ; cor=; Ncor= a 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 0 c 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 0 g 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 0 t 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0 0
positions_6nt_m1_shift7 (positions_6nt_m1)				; positions_7nt_m8 versus positions_6nt_m1; m=27/33; ncol2=15; w=0; offset=6; strand=D; shift=7; score=0.564508; -------acACACrCACACrca--- ; cor=; Ncor= a 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 0 0 c 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 0 0 g 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 0 0 t 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0 0 0
oligos_7nt_mkv5_m4_shift12 (oligos_7nt_mkv5_m4)				; positions_7nt_m8 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=11; strand=D; shift=12; score=0.522508; ------------caCACAcACACac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 c 0 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 g 0 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 t 0 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279
oligos_7nt_mkv5_m5_shift8 (oligos_7nt_mkv5_m5)				; positions_7nt_m8 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=7; strand=D; shift=8; score= 0.4984; --------caCACGCACACmca--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 c 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 g 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 t 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0
dyads_m9_shift4 (dyads_m9)				; positions_7nt_m8 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=3; strand=D; shift=4; score=0.497163; ----caAACACACACmca------- ; cor=; Ncor= a 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 c 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 g 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 t 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0
dyads_m4_shift4 (dyads_m4)				; positions_7nt_m8 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=3; strand=D; shift=4; score=0.496196; ----camACACACrCaC-------- ; cor=; Ncor= a 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 c 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 g 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 t 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0
dyads_m6_shift4 (dyads_m6)				; positions_7nt_m8 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=3; strand=D; shift=4; score=0.480567; ----camACACACAyac-------- ; cor=; Ncor= a 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 c 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 g 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 t 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m9_shift12 (oligos_7nt_mkv5_m9)				; positions_7nt_m8 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=11; strand=D; shift=12; score=0.434797; ------------caCAsACACAAam ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 c 0 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 g 0 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 t 0 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m1_shift2 (oligos_7nt_mkv5_m1)				; oligos_7nt_mkv5_m1; m=0 (reference); ncol1=11; shift=2; ncol=13; --maAACACAAmm ; Alignment reference a 0 0 623 573 1802 1747 96 1720 81 1680 1767 555 640 c 0 0 544 437 1 22 1609 67 1586 57 20 518 599 g 0 0 384 449 28 54 61 58 114 51 39 350 326 t 0 0 329 421 49 57 114 35 99 92 54 457 315
oligos_7nt_mkv5_m1_shift2 (oligos_7nt_mkv5_m1)				; oligos_7nt_mkv5_m1 versus oligos_7nt_mkv5_m1; m=1/3; ncol2=11; w=0; offset=0; strand=D; shift=2; score= 1; --maAACACAAmm ; cor=; Ncor= a 0 0 623 573 1802 1747 96 1720 81 1680 1767 555 640 c 0 0 544 437 1 22 1609 67 1586 57 20 518 599 g 0 0 384 449 28 54 61 58 114 51 39 350 326 t 0 0 329 421 49 57 114 35 99 92 54 457 315
oligos_7nt_mkv5_m9_shift0 (oligos_7nt_mkv5_m9)				; oligos_7nt_mkv5_m1 versus oligos_7nt_mkv5_m9; m=2/3; ncol2=13; w=-2; offset=-2; strand=D; shift=0; score=0.64976; caCAsACACAAam ; cor=; Ncor= a 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 c 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 g 315 389 183 111 1213 34 68 39 57 49 71 334 324 t 284 218 140 71 96 15 49 13 26 35 42 323 270
oligos_6nt_mkv4_m4_shift1 (oligos_6nt_mkv4_m4)				; oligos_7nt_mkv5_m1 versus oligos_6nt_mkv4_m4; m=3/3; ncol2=11; w=-1; offset=-1; strand=D; shift=1; score=0.586311; -ammAACACCmc- ; cor=; Ncor= a 0 603 434 886 1461 1470 34 1378 0 0 542 381 0 c 0 379 473 435 6 49 1453 126 1550 1575 416 540 0 g 0 284 341 132 31 32 32 22 11 3 328 294 0 t 0 322 340 135 90 37 69 62 27 10 302 373 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m6_shift11 (dyads_m6)				; dyads_m6; m=0 (reference); ncol1=13; shift=11; ncol=24; -----------camACACACAyac ; Alignment reference a 0 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 c 0 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 g 0 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 t 0 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355
dyads_m6_shift11 (dyads_m6)				; dyads_m6 versus dyads_m6; m=1/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score= 1; -----------camACACACAyac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 c 0 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 g 0 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 t 0 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355
dyads_m4_shift11 (dyads_m4)				; dyads_m6 versus dyads_m4; m=2/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score=0.86598; -----------camACACACrCaC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 c 0 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 g 0 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 t 0 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355
oligos_7nt_mkv5_m4_shift11 (oligos_7nt_mkv5_m4)				; dyads_m6 versus oligos_7nt_mkv5_m4; m=3/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score=0.858881; -----------caCACAcACACac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 c 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 g 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 t 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279
dyads_m9_shift11 (dyads_m9)				; dyads_m6 versus dyads_m9; m=4/33; ncol2=14; w=0; offset=0; strand=D; shift=11; score=0.845845; -----------caAACACACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 c 0 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 g 0 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 t 0 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373
dyads_m7_shift11 (dyads_m7)				; dyads_m6 versus dyads_m7; m=5/33; ncol2=15; w=0; offset=0; strand=D; shift=11; score=0.786561; -----------camACACACACrC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 c 0 0 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 g 0 0 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 t 0 0 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135
oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)				; dyads_m6 versus oligos_7nt_mkv5_m9; m=6/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score=0.76923; -----------caCAsACACAAam ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270
oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)				; dyads_m6 versus oligos_7nt_mkv5_m8; m=7/33; ncol2=16; w=-3; offset=-3; strand=D; shift=8; score=0.707559; --------ACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224
oligos_7nt_mkv5_m5_shift11 (oligos_7nt_mkv5_m5)				; dyads_m6 versus oligos_7nt_mkv5_m5; m=8/33; ncol2=14; w=0; offset=0; strand=D; shift=11; score=0.704792; -----------caCACGCACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 c 0 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 g 0 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 t 0 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418
positions_6nt_m1_shift10 (positions_6nt_m1)				; dyads_m6 versus positions_6nt_m1; m=9/33; ncol2=15; w=-1; offset=-1; strand=D; shift=10; score= 0.6762; ----------acACACrCACACrc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 c 0 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 g 0 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 t 0 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605
oligos_6nt_mkv4_m5_rc_shift10 (oligos_6nt_mkv4_m5_rc)				; dyads_m6 versus oligos_6nt_mkv4_m5_rc; m=10/33; ncol2=16; w=-1; offset=-1; strand=R; shift=10; score=0.651583; ----------acAsACACrCACAs ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 c 0 0 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 g 0 0 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 t 0 0 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62
dyads_m10_shift10 (dyads_m10)				; dyads_m6 versus dyads_m10; m=11/33; ncol2=18; w=-1; offset=-1; strand=D; shift=10; score=0.638382; ----------ACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 c 0 0 0 0 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 g 0 0 0 0 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 t 0 0 0 0 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221
oligos_6nt_mkv4_m2_shift9 (oligos_6nt_mkv4_m2)				; dyads_m6 versus oligos_6nt_mkv4_m2; m=12/33; ncol2=16; w=-2; offset=-2; strand=D; shift=9; score=0.636311; ---------caCwCACAyACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 c 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 g 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 t 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362
positions_6nt_m10_shift9 (positions_6nt_m10)				; dyads_m6 versus positions_6nt_m10; m=13/33; ncol2=24; w=-2; offset=-2; strand=D; shift=9; score=0.503549; ---------cacamACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 c 0 0 0 0 0 0 0 0 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 g 0 0 0 0 0 0 0 0 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 t 0 0 0 0 0 0 0 0 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168
positions_6nt_m6_shift10 (positions_6nt_m6)				; dyads_m6 versus positions_6nt_m6; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=10; score=0.500773; ----------acamACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 c 0 0 0 0 0 0 0 0 0 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 g 0 0 0 0 0 0 0 0 0 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 t 0 0 0 0 0 0 0 0 0 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229
positions_6nt_m8_shift9 (positions_6nt_m8)				; dyads_m6 versus positions_6nt_m8; m=15/33; ncol2=23; w=-2; offset=-2; strand=D; shift=9; score=0.496034; ---------caCACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 c 0 0 0 0 0 0 0 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 g 0 0 0 0 0 0 0 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 t 0 0 0 0 0 0 0 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524
positions_6nt_m2_shift7 (positions_6nt_m2)				; dyads_m6 versus positions_6nt_m2; m=16/33; ncol2=24; w=-4; offset=-4; strand=D; shift=7; score=0.494766; -------caCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 c 0 0 0 0 0 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 g 0 0 0 0 0 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 t 0 0 0 0 0 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322
positions_7nt_m2_shift11 (positions_7nt_m2)				; dyads_m6 versus positions_7nt_m2; m=17/33; ncol2=24; w=0; offset=0; strand=D; shift=11; score=0.489006; -----------cacACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 c 0 0 0 0 0 0 0 0 0 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 g 0 0 0 0 0 0 0 0 0 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 t 0 0 0 0 0 0 0 0 0 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215
positions_6nt_m9_shift8 (positions_6nt_m9)				; dyads_m6 versus positions_6nt_m9; m=18/33; ncol2=24; w=-3; offset=-3; strand=D; shift=8; score=0.483325; --------acaCacACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 c 0 0 0 0 0 0 0 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 g 0 0 0 0 0 0 0 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 t 0 0 0 0 0 0 0 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193
positions_7nt_m10_shift10 (positions_7nt_m10)				; dyads_m6 versus positions_7nt_m10; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=10; score=0.482925; ----------acACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 c 0 0 0 0 0 0 0 0 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 g 0 0 0 0 0 0 0 0 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 t 0 0 0 0 0 0 0 0 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317
positions_7nt_m6_shift10 (positions_7nt_m6)				; dyads_m6 versus positions_7nt_m6; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=10; score=0.482192; ----------acaCACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 c 0 0 0 0 0 0 0 0 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 g 0 0 0 0 0 0 0 0 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 t 0 0 0 0 0 0 0 0 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364
positions_7nt_m3_rc_shift3 (positions_7nt_m3_rc)				; dyads_m6 versus positions_7nt_m3_rc; m=21/33; ncol2=24; w=-8; offset=-8; strand=R; shift=3; score=0.48145; ---cacACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 c 0 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 g 0 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 t 0 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536
positions_7nt_m7_shift7 (positions_7nt_m7)				; dyads_m6 versus positions_7nt_m7; m=22/33; ncol2=24; w=-4; offset=-4; strand=D; shift=7; score=0.481439; -------caCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 c 0 0 0 0 0 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 g 0 0 0 0 0 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 t 0 0 0 0 0 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401
positions_7nt_m1_shift11 (positions_7nt_m1)				; dyads_m6 versus positions_7nt_m1; m=23/33; ncol2=24; w=0; offset=0; strand=D; shift=11; score=0.481126; -----------cacACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 c 0 0 0 0 0 0 0 0 0 0 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 g 0 0 0 0 0 0 0 0 0 0 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 t 0 0 0 0 0 0 0 0 0 0 0 1042 717 741 296 338 185 227 149 258 277 195 76 212
positions_7nt_m8_shift8 (positions_7nt_m8)				; dyads_m6 versus positions_7nt_m8; m=24/33; ncol2=24; w=-3; offset=-3; strand=D; shift=8; score=0.480567; --------acACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 c 0 0 0 0 0 0 0 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 g 0 0 0 0 0 0 0 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 t 0 0 0 0 0 0 0 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389
dyads_m8_shift7 (dyads_m8)				; dyads_m6 versus dyads_m8; m=25/33; ncol2=24; w=-4; offset=-4; strand=D; shift=7; score=0.480159; -------CaCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 c 0 0 0 0 0 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 g 0 0 0 0 0 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 t 0 0 0 0 0 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289
positions_7nt_m4_shift1 (positions_7nt_m4)				; dyads_m6 versus positions_7nt_m4; m=26/33; ncol2=24; w=-10; offset=-10; strand=D; shift=1; score=0.47715; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297
dyads_m1_shift11 (dyads_m1)				; dyads_m6 versus dyads_m1; m=27/33; ncol2=24; w=0; offset=0; strand=D; shift=11; score=0.475484; -----------cacACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 c 0 0 0 0 0 0 0 0 0 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 g 0 0 0 0 0 0 0 0 0 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 t 0 0 0 0 0 0 0 0 0 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236
positions_7nt_m9_shift3 (positions_7nt_m9)				; dyads_m6 versus positions_7nt_m9; m=28/33; ncol2=24; w=-8; offset=-8; strand=D; shift=3; score=0.47542; ---caCACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 c 0 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 g 0 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 t 0 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783
positions_6nt_m7_shift5 (positions_6nt_m7)				; dyads_m6 versus positions_6nt_m7; m=29/33; ncol2=24; w=-6; offset=-6; strand=D; shift=5; score=0.474485; -----caCaCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 c 0 0 0 0 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 g 0 0 0 0 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 t 0 0 0 0 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420
positions_7nt_m5_shift4 (positions_7nt_m5)				; dyads_m6 versus positions_7nt_m5; m=30/33; ncol2=24; w=-7; offset=-7; strand=D; shift=4; score=0.474462; ----acaCACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 c 0 0 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 g 0 0 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 t 0 0 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493
positions_6nt_m4_shift0 (positions_6nt_m4)				; dyads_m6 versus positions_6nt_m4; m=31/33; ncol2=24; w=-11; offset=-11; strand=D; shift=0; score=0.472149; acrCACACACACACACACACACac ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762
positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)				; dyads_m6 versus positions_6nt_m3_rc; m=32/33; ncol2=24; w=-11; offset=-11; strand=R; shift=0; score=0.470899; mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706
positions_6nt_m5_rc_shift10 (positions_6nt_m5_rc)				; dyads_m6 versus positions_6nt_m5_rc; m=33/33; ncol2=24; w=-1; offset=-1; strand=R; shift=10; score=0.469681; ----------acaCACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 c 0 0 0 0 0 0 0 0 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 g 0 0 0 0 0 0 0 0 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 t 0 0 0 0 0 0 0 0 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m2_shift1 (positions_6nt_m2)				; positions_6nt_m2; m=0 (reference); ncol1=24; shift=1; ncol=25; -caCACACACACACACACACACaca ; Alignment reference a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111
positions_6nt_m2_shift1 (positions_6nt_m2)				; positions_6nt_m2 versus positions_6nt_m2; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111
positions_7nt_m7_shift1 (positions_7nt_m7)				; positions_6nt_m2 versus positions_7nt_m7; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.996245; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231
dyads_m8_shift1 (dyads_m8)				; positions_6nt_m2 versus dyads_m8; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991818; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988
positions_7nt_m4_shift1 (positions_7nt_m4)				; positions_6nt_m2 versus positions_7nt_m4; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989888; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233
dyads_m1_shift1 (dyads_m1)				; positions_6nt_m2 versus dyads_m1; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989545; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002
positions_7nt_m9_shift1 (positions_7nt_m9)				; positions_6nt_m2 versus positions_7nt_m9; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987055; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216
positions_7nt_m2_shift1 (positions_7nt_m2)				; positions_6nt_m2 versus positions_7nt_m2; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.986339; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894
positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)				; positions_6nt_m2 versus positions_7nt_m3_rc; m=8/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.98577; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888
positions_7nt_m1_shift1 (positions_7nt_m1)				; positions_6nt_m2 versus positions_7nt_m1; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984898; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835
positions_6nt_m7_shift1 (positions_6nt_m7)				; positions_6nt_m2 versus positions_6nt_m7; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.983399; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062
positions_6nt_m10_shift1 (positions_6nt_m10)				; positions_6nt_m2 versus positions_6nt_m10; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.978814; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785
positions_6nt_m8_shift1 (positions_6nt_m8)				; positions_6nt_m2 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.946964; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0
positions_7nt_m8_shift0 (positions_7nt_m8)				; positions_6nt_m2 versus positions_7nt_m8; m=13/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.911396; acACACACACACACACACACACac- ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 0 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 0 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 0 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444 0
positions_6nt_m4_shift0 (positions_6nt_m4)				; positions_6nt_m2 versus positions_6nt_m4; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.911324; acrCACACACACACACACACACac- ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 0 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 0 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 0 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762 0
positions_7nt_m5_shift0 (positions_7nt_m5)				; positions_6nt_m2 versus positions_7nt_m5; m=15/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908713; acaCACACACACACACACACACac- ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 0 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 0 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 0 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250 0
positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)				; positions_6nt_m2 versus positions_6nt_m5_rc; m=16/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.908298; acaCACACACACACACACACACac- ; cor=; Ncor= a 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 0 c 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 0 g 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 0 t 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346 0
positions_6nt_m6_shift0 (positions_6nt_m6)				; positions_6nt_m2 versus positions_6nt_m6; m=17/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.907272; acamACACACACACACACACACac- ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 0 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 0 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 0 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141 0
positions_7nt_m10_shift0 (positions_7nt_m10)				; positions_6nt_m2 versus positions_7nt_m10; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.906762; acACACACACACACACACACACaC- ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 0 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 0 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 0 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221 0
positions_7nt_m6_shift0 (positions_7nt_m6)				; positions_6nt_m2 versus positions_7nt_m6; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.906504; acaCACACACACACACACACACac- ; cor=; Ncor= a 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 0 c 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 0 g 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 0 t 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314 0
positions_6nt_m9_shift0 (positions_6nt_m9)				; positions_6nt_m2 versus positions_6nt_m9; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.904567; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0
positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)				; positions_6nt_m2 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.861808; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0
dyads_m10_shift4 (dyads_m10)				; positions_6nt_m2 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=3; strand=D; shift=4; score=0.737685; ----ACACACACACACACrCAC--- ; cor=; Ncor= a 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 0 0 c 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 0 0 g 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 0 0 t 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0 0 0
oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)				; positions_6nt_m2 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=7; strand=D; shift=8; score=0.662497; --------ACACACACACACACAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0
oligos_6nt_mkv4_m2_shift7 (oligos_6nt_mkv4_m2)				; positions_6nt_m2 versus oligos_6nt_mkv4_m2; m=24/33; ncol2=16; w=0; offset=6; strand=D; shift=7; score=0.608752; -------caCwCACAyACACmca-- ; cor=; Ncor= a 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 0 c 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 0 g 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 0 t 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0 0
oligos_6nt_mkv4_m5_rc_shift8 (oligos_6nt_mkv4_m5_rc)				; positions_6nt_m2 versus oligos_6nt_mkv4_m5_rc; m=25/33; ncol2=16; w=0; offset=7; strand=R; shift=8; score=0.601289; --------acAsACACrCACAsac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 c 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 g 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 t 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0
positions_6nt_m1_shift10 (positions_6nt_m1)				; positions_6nt_m2 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=9; strand=D; shift=10; score=0.565244; ----------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601
dyads_m7_shift5 (dyads_m7)				; positions_6nt_m2 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=4; strand=D; shift=5; score=0.564635; -----camACACACACrCac----- ; cor=; Ncor= a 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 c 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 g 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 t 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0
oligos_7nt_mkv5_m4_shift9 (oligos_7nt_mkv5_m4)				; positions_6nt_m2 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=8; strand=D; shift=9; score=0.526094; ---------caCACAcACACac--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 0 c 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 0 g 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 0 t 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0 0
dyads_m9_shift5 (dyads_m9)				; positions_6nt_m2 versus dyads_m9; m=29/33; ncol2=14; w=0; offset=4; strand=D; shift=5; score=0.496152; -----caAACACACACmca------ ; cor=; Ncor= a 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 c 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 g 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 t 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0
dyads_m6_shift5 (dyads_m6)				; positions_6nt_m2 versus dyads_m6; m=30/33; ncol2=13; w=0; offset=4; strand=D; shift=5; score=0.494766; -----camACACACAyac------- ; cor=; Ncor= a 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 c 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 g 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 t 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0
oligos_7nt_mkv5_m5_shift11 (oligos_7nt_mkv5_m5)				; positions_6nt_m2 versus oligos_7nt_mkv5_m5; m=31/33; ncol2=14; w=0; offset=10; strand=D; shift=11; score=0.490066; -----------caCACGCACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 c 0 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 g 0 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 t 0 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501
dyads_m4_shift5 (dyads_m4)				; positions_6nt_m2 versus dyads_m4; m=32/33; ncol2=13; w=0; offset=4; strand=D; shift=5; score=0.479571; -----camACACACrCaC------- ; cor=; Ncor= a 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 c 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 g 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 t 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0
oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)				; positions_6nt_m2 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.443916; -----------caCAsACACAAam- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m5_shift1 (dyads_m5)				; dyads_m5; m=0 (reference); ncol1=11; shift=1; ncol=12; -ccACCACCAcc ; Alignment reference a 0 849 627 3918 50 30 4141 38 14 3899 676 705 c 0 2252 2408 191 4112 4096 103 4058 4126 239 2169 2498 g 0 690 543 129 102 115 126 110 85 188 692 474 t 0 681 894 234 208 231 102 266 247 146 935 795
dyads_m5_shift1 (dyads_m5)				; dyads_m5 versus dyads_m5; m=1/4; ncol2=11; w=0; offset=0; strand=D; shift=1; score= 1; -ccACCACCAcc ; cor=; Ncor= a 0 849 627 3918 50 30 4141 38 14 3899 676 705 c 0 2252 2408 191 4112 4096 103 4058 4126 239 2169 2498 g 0 690 543 129 102 115 126 110 85 188 692 474 t 0 681 894 234 208 231 102 266 247 146 935 795
oligos_6nt_mkv4_m1_shift1 (oligos_6nt_mkv4_m1)				; dyads_m5 versus oligos_6nt_mkv4_m1; m=2/4; ncol2=11; w=0; offset=0; strand=D; shift=1; score=0.706608; -cycCCACAAmm ; cor=; Ncor= a 0 354 335 306 0 2 1250 50 1267 1364 427 379 c 0 516 530 804 1437 1382 94 1304 72 17 444 541 g 0 254 207 179 0 16 42 44 36 33 264 277 t 0 320 372 155 7 44 58 46 69 30 309 247
oligos_7nt_mkv5_m3_shift2 (oligos_7nt_mkv5_m3)				; dyads_m5 versus oligos_7nt_mkv5_m3; m=3/4; ncol2=12; w=0; offset=1; strand=D; shift=2; score=0.669122; --caCCAmCACC ; cor=; Ncor= a 0 0 537 1591 66 86 2670 1679 63 2659 69 354 c 0 0 1526 481 2678 2677 71 919 2713 103 2669 2209 g 0 0 300 368 59 42 43 104 15 52 63 104 t 0 0 489 412 49 47 68 150 61 38 51 185
oligos_6nt_mkv4_m4_shift0 (oligos_6nt_mkv4_m4)				; dyads_m5 versus oligos_6nt_mkv4_m4; m=4/4; ncol2=11; w=-1; offset=-1; strand=D; shift=0; score=0.593343; ammAACACCmc- ; cor=; Ncor= a 603 434 886 1461 1470 34 1378 0 0 542 381 0 c 379 473 435 6 49 1453 126 1550 1575 416 540 0 g 284 341 132 31 32 32 22 11 3 328 294 0 t 322 340 135 90 37 69 62 27 10 302 373 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m1_shift1 (dyads_m1)				; dyads_m1; m=0 (reference); ncol1=24; shift=1; ncol=25; -cacACACACACACACACACACaCa ; Alignment reference a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002
dyads_m1_shift1 (dyads_m1)				; dyads_m1 versus dyads_m1; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002
positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)				; dyads_m1 versus positions_7nt_m3_rc; m=2/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.995833; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888
positions_7nt_m1_shift1 (positions_7nt_m1)				; dyads_m1 versus positions_7nt_m1; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.994944; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835
positions_7nt_m7_shift1 (positions_7nt_m7)				; dyads_m1 versus positions_7nt_m7; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.993344; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231
positions_6nt_m7_shift1 (positions_6nt_m7)				; dyads_m1 versus positions_6nt_m7; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.992266; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062
positions_7nt_m4_shift1 (positions_7nt_m4)				; dyads_m1 versus positions_7nt_m4; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.992017; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233
positions_7nt_m2_shift1 (positions_7nt_m2)				; dyads_m1 versus positions_7nt_m2; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991564; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894
positions_7nt_m9_shift1 (positions_7nt_m9)				; dyads_m1 versus positions_7nt_m9; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990714; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216
dyads_m8_shift1 (dyads_m8)				; dyads_m1 versus dyads_m8; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990272; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988
positions_6nt_m2_shift1 (positions_6nt_m2)				; dyads_m1 versus positions_6nt_m2; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989545; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111
positions_6nt_m10_shift1 (positions_6nt_m10)				; dyads_m1 versus positions_6nt_m10; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.980697; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785
positions_6nt_m8_shift1 (positions_6nt_m8)				; dyads_m1 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.948907; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0
positions_7nt_m5_shift0 (positions_7nt_m5)				; dyads_m1 versus positions_7nt_m5; m=13/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.915426; acaCACACACACACACACACACac- ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 0 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 0 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 0 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250 0
positions_6nt_m6_shift0 (positions_6nt_m6)				; dyads_m1 versus positions_6nt_m6; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.912035; acamACACACACACACACACACac- ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 0 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 0 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 0 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141 0
positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)				; dyads_m1 versus positions_6nt_m5_rc; m=15/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.911728; acaCACACACACACACACACACac- ; cor=; Ncor= a 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 0 c 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 0 g 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 0 t 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346 0
positions_7nt_m10_shift0 (positions_7nt_m10)				; dyads_m1 versus positions_7nt_m10; m=16/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.911607; acACACACACACACACACACACaC- ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 0 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 0 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 0 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221 0
positions_7nt_m6_shift0 (positions_7nt_m6)				; dyads_m1 versus positions_7nt_m6; m=17/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910576; acaCACACACACACACACACACac- ; cor=; Ncor= a 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 0 c 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 0 g 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 0 t 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314 0
positions_7nt_m8_shift0 (positions_7nt_m8)				; dyads_m1 versus positions_7nt_m8; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910501; acACACACACACACACACACACac- ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 0 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 0 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 0 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444 0
positions_6nt_m4_shift0 (positions_6nt_m4)				; dyads_m1 versus positions_6nt_m4; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.909086; acrCACACACACACACACACACac- ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 0 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 0 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 0 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762 0
positions_6nt_m9_shift0 (positions_6nt_m9)				; dyads_m1 versus positions_6nt_m9; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.904482; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0
positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)				; dyads_m1 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.861749; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0
dyads_m10_shift6 (dyads_m10)				; dyads_m1 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=5; strand=D; shift=6; score=0.737525; ------ACACACACACACACrCAC- ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0
oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)				; dyads_m1 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=7; strand=D; shift=8; score=0.657608; --------ACACACACACACACAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0
oligos_6nt_mkv4_m5_rc_shift2 (oligos_6nt_mkv4_m5_rc)				; dyads_m1 versus oligos_6nt_mkv4_m5_rc; m=24/33; ncol2=16; w=0; offset=1; strand=R; shift=2; score=0.603566; --acAsACACrCACAsac------- ; cor=; Ncor= a 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 0 0 0 0 0 c 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 0 0 0 0 0 g 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 0 0 0 0 0 t 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0 0 0 0 0 0
oligos_6nt_mkv4_m2_shift9 (oligos_6nt_mkv4_m2)				; dyads_m1 versus oligos_6nt_mkv4_m2; m=25/33; ncol2=16; w=0; offset=8; strand=D; shift=9; score=0.600148; ---------caCwCACAyACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 c 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 g 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 t 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421
positions_6nt_m1_shift10 (positions_6nt_m1)				; dyads_m1 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=9; strand=D; shift=10; score=0.574286; ----------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601
dyads_m7_shift1 (dyads_m7)				; dyads_m1 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.563533; -camACACACACrCac--------- ; cor=; Ncor= a 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 0 0 c 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 0 0 g 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 0 0 t 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m4_shift9 (oligos_7nt_mkv5_m4)				; dyads_m1 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=8; strand=D; shift=9; score=0.52454; ---------caCACAcACACac--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 0 c 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 0 g 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 0 t 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0 0
oligos_7nt_mkv5_m5_shift11 (oligos_7nt_mkv5_m5)				; dyads_m1 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=10; strand=D; shift=11; score=0.497652; -----------caCACGCACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 c 0 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 g 0 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 t 0 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501
dyads_m9_shift1 (dyads_m9)				; dyads_m1 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.49394; -caAACACACACmca---------- ; cor=; Ncor= a 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 0 0 0 c 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 0 0 0 g 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 0 0 0 t 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0 0 0 0
dyads_m4_shift1 (dyads_m4)				; dyads_m1 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.491653; -camACACACrCaC----------- ; cor=; Ncor= a 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 0 0 0 c 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 0 0 0 g 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 0 0 0 t 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0 0 0 0
dyads_m6_shift1 (dyads_m6)				; dyads_m1 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.475484; -camACACACAyac----------- ; cor=; Ncor= a 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 0 0 0 c 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 0 0 0 g 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 0 0 0 t 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)				; dyads_m1 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.423886; -----------caCAsACACAAam- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m10_shift1 (positions_7nt_m10)				; positions_7nt_m10; m=0 (reference); ncol1=24; shift=1; ncol=25; -acACACACACACACACACACACaC ; Alignment reference a 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 c 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 g 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 t 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221
positions_7nt_m10_shift1 (positions_7nt_m10)				; positions_7nt_m10 versus positions_7nt_m10; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -acACACACACACACACACACACaC ; cor=; Ncor= a 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 c 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 g 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 t 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221
positions_7nt_m6_shift1 (positions_7nt_m6)				; positions_7nt_m10 versus positions_7nt_m6; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.997722; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 c 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 g 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 t 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314
positions_6nt_m6_shift1 (positions_6nt_m6)				; positions_7nt_m10 versus positions_6nt_m6; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991812; -acamACACACACACACACACACac ; cor=; Ncor= a 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141
positions_7nt_m5_shift1 (positions_7nt_m5)				; positions_7nt_m10 versus positions_7nt_m5; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.99087; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250
positions_6nt_m5_rc_shift1 (positions_6nt_m5_rc)				; positions_7nt_m10 versus positions_6nt_m5_rc; m=5/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.990757; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 c 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 g 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 t 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346
positions_7nt_m8_shift1 (positions_7nt_m8)				; positions_7nt_m10 versus positions_7nt_m8; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987749; -acACACACACACACACACACACac ; cor=; Ncor= a 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444
positions_6nt_m4_shift1 (positions_6nt_m4)				; positions_7nt_m10 versus positions_6nt_m4; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.985863; -acrCACACACACACACACACACac ; cor=; Ncor= a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762
positions_6nt_m9_shift1 (positions_6nt_m9)				; positions_7nt_m10 versus positions_6nt_m9; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.981208; -acaCacACACACACACACACACac ; cor=; Ncor= a 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244
positions_6nt_m8_shift2 (positions_6nt_m8)				; positions_7nt_m10 versus positions_6nt_m8; m=9/33; ncol2=23; w=0; offset=1; strand=D; shift=2; score=0.946684; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027
positions_6nt_m3_rc_shift1 (positions_6nt_m3_rc)				; positions_7nt_m10 versus positions_6nt_m3_rc; m=10/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.926163; -mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706
positions_7nt_m7_shift2 (positions_7nt_m7)				; positions_7nt_m10 versus positions_7nt_m7; m=11/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.912104; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313
dyads_m1_shift2 (dyads_m1)				; positions_7nt_m10 versus dyads_m1; m=12/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.911607; --cacACACACACACACACACACaC ; cor=; Ncor= a 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034
positions_7nt_m9_shift2 (positions_7nt_m9)				; positions_7nt_m10 versus positions_7nt_m9; m=13/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.91106; --caCACACACACACACACACACAC ; cor=; Ncor= a 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 c 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 g 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 t 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316
positions_7nt_m4_shift2 (positions_7nt_m4)				; positions_7nt_m10 versus positions_7nt_m4; m=14/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910278; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297
dyads_m8_shift2 (dyads_m8)				; positions_7nt_m10 versus dyads_m8; m=15/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910211; --CaCACACACACACACACACACrC ; cor=; Ncor= a 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049
positions_7nt_m3_rc_shift2 (positions_7nt_m3_rc)				; positions_7nt_m10 versus positions_7nt_m3_rc; m=16/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.908799; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 c 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 g 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 t 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963
positions_6nt_m7_shift0 (positions_6nt_m7)				; positions_7nt_m10 versus positions_6nt_m7; m=17/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908797; caCaCACACACACACACACACACa- ; cor=; Ncor= a 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 0 c 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 0 g 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 0 t 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062 0
positions_6nt_m10_shift0 (positions_6nt_m10)				; positions_7nt_m10 versus positions_6nt_m10; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908654; cacamACACACACACACACACACa- ; cor=; Ncor= a 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 0 c 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 0 g 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 0 t 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785 0
positions_7nt_m2_shift2 (positions_7nt_m2)				; positions_7nt_m10 versus positions_7nt_m2; m=19/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.908486; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 c 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 g 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 t 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970
positions_7nt_m1_shift2 (positions_7nt_m1)				; positions_7nt_m10 versus positions_7nt_m1; m=20/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.908302; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 c 0 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 g 0 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 t 0 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882
positions_6nt_m2_shift2 (positions_6nt_m2)				; positions_7nt_m10 versus positions_6nt_m2; m=21/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.906762; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256
dyads_m10_shift5 (dyads_m10)				; positions_7nt_m10 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=4; strand=D; shift=5; score=0.741032; -----ACACACACACACACrCAC-- ; cor=; Ncor= a 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 0 c 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 0 g 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 0 t 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0 0
oligos_7nt_mkv5_m8_shift5 (oligos_7nt_mkv5_m8)				; positions_7nt_m10 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=4; strand=D; shift=5; score=0.660292; -----ACACACACACACACAC---- ; cor=; Ncor= a 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 0 0 c 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 0 0 g 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 0 0 t 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0 0 0
oligos_6nt_mkv4_m2_shift4 (oligos_6nt_mkv4_m2)				; positions_7nt_m10 versus oligos_6nt_mkv4_m2; m=24/33; ncol2=16; w=0; offset=3; strand=D; shift=4; score=0.604103; ----caCwCACAyACACmca----- ; cor=; Ncor= a 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 0 0 0 0 c 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 0 0 0 0 g 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 0 0 0 0 t 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0 0 0 0 0
oligos_6nt_mkv4_m5_rc_shift9 (oligos_6nt_mkv4_m5_rc)				; positions_7nt_m10 versus oligos_6nt_mkv4_m5_rc; m=25/33; ncol2=16; w=0; offset=8; strand=R; shift=9; score=0.596522; ---------acAsACACrCACAsac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 c 0 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 g 0 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 t 0 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214
dyads_m7_shift8 (dyads_m7)				; positions_7nt_m10 versus dyads_m7; m=26/33; ncol2=15; w=0; offset=7; strand=D; shift=8; score=0.565589; --------camACACACACrCac-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 c 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 g 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 t 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0
positions_6nt_m1_shift7 (positions_6nt_m1)				; positions_7nt_m10 versus positions_6nt_m1; m=27/33; ncol2=15; w=0; offset=6; strand=D; shift=7; score=0.56547; -------acACACrCACACrca--- ; cor=; Ncor= a 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 0 0 c 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 0 0 g 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 0 0 t 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0 0 0
oligos_7nt_mkv5_m4_shift6 (oligos_7nt_mkv5_m4)				; positions_7nt_m10 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=5; strand=D; shift=6; score=0.524231; ------caCACAcACACac------ ; cor=; Ncor= a 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 0 0 0 0 c 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 0 0 0 0 g 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 0 0 0 0 t 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0 0 0 0 0
dyads_m4_shift10 (dyads_m4)				; positions_7nt_m10 versus dyads_m4; m=29/33; ncol2=13; w=0; offset=9; strand=D; shift=10; score=0.487222; ----------camACACACrCaC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 c 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 g 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 t 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0
dyads_m9_shift2 (dyads_m9)				; positions_7nt_m10 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=1; strand=D; shift=2; score=0.486302; --caAACACACACmca--------- ; cor=; Ncor= a 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 0 0 c 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 0 0 g 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 0 0 t 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m5_shift8 (oligos_7nt_mkv5_m5)				; positions_7nt_m10 versus oligos_7nt_mkv5_m5; m=31/33; ncol2=14; w=0; offset=7; strand=D; shift=8; score=0.483291; --------caCACGCACACmca--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 c 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 g 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 t 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0
dyads_m6_shift2 (dyads_m6)				; positions_7nt_m10 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.482925; --camACACACAyac---------- ; cor=; Ncor= a 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 0 0 c 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 0 0 g 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 0 0 t 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m9_shift8 (oligos_7nt_mkv5_m9)				; positions_7nt_m10 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=7; strand=D; shift=8; score=0.423493; --------caCAsACACAAam---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 0 0 c 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 0 0 g 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 0 0 t 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m1_shift9 (positions_6nt_m1)				; positions_6nt_m1; m=0 (reference); ncol1=15; shift=9; ncol=24; ---------acACACrCACACrca ; Alignment reference a 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601
positions_6nt_m1_shift9 (positions_6nt_m1)				; positions_6nt_m1 versus positions_6nt_m1; m=1/33; ncol2=15; w=0; offset=0; strand=D; shift=9; score= 1; ---------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601
oligos_7nt_mkv5_m5_shift10 (oligos_7nt_mkv5_m5)				; positions_6nt_m1 versus oligos_7nt_mkv5_m5; m=2/33; ncol2=14; w=0; offset=1; strand=D; shift=10; score=0.866036; ----------caCACGCACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 c 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 g 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 t 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501
oligos_7nt_mkv5_m8_shift9 (oligos_7nt_mkv5_m8)				; positions_6nt_m1 versus oligos_7nt_mkv5_m8; m=3/33; ncol2=16; w=0; offset=0; strand=D; shift=9; score=0.838054; ---------ACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 c 0 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 g 0 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 t 0 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929
oligos_7nt_mkv5_m4_shift10 (oligos_7nt_mkv5_m4)				; positions_6nt_m1 versus oligos_7nt_mkv5_m4; m=4/33; ncol2=13; w=0; offset=1; strand=D; shift=10; score=0.781268; ----------caCACAcACACac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 c 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 g 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 t 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0
oligos_6nt_mkv4_m2_shift8 (oligos_6nt_mkv4_m2)				; positions_6nt_m1 versus oligos_6nt_mkv4_m2; m=5/33; ncol2=16; w=-1; offset=-1; strand=D; shift=8; score=0.779902; --------caCwCACAyACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 c 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 g 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 t 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421
dyads_m10_shift7 (dyads_m10)				; positions_6nt_m1 versus dyads_m10; m=6/33; ncol2=18; w=-2; offset=-2; strand=D; shift=7; score=0.769973; -------ACACACACACACACrCA ; cor=; Ncor= a 0 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 c 0 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 g 0 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 t 0 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902
dyads_m7_shift10 (dyads_m7)				; positions_6nt_m1 versus dyads_m7; m=7/33; ncol2=15; w=0; offset=1; strand=D; shift=10; score=0.764421; ----------camACACACACrCa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 c 0 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 g 0 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 t 0 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558
oligos_6nt_mkv4_m5_rc_shift7 (oligos_6nt_mkv4_m5_rc)				; positions_6nt_m1 versus oligos_6nt_mkv4_m5_rc; m=8/33; ncol2=16; w=-2; offset=-2; strand=R; shift=7; score=0.760388; -------acAsACACrCACAsac- ; cor=; Ncor= a 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 c 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 g 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 t 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0
dyads_m9_shift10 (dyads_m9)				; positions_6nt_m1 versus dyads_m9; m=9/33; ncol2=14; w=0; offset=1; strand=D; shift=10; score=0.736034; ----------caAACACACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 c 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 g 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 t 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431
dyads_m4_shift10 (dyads_m4)				; positions_6nt_m1 versus dyads_m4; m=10/33; ncol2=13; w=0; offset=1; strand=D; shift=10; score=0.684058; ----------camACACACrCaC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 c 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 g 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 t 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0
dyads_m6_shift10 (dyads_m6)				; positions_6nt_m1 versus dyads_m6; m=11/33; ncol2=13; w=0; offset=1; strand=D; shift=10; score= 0.6762; ----------camACACACAyac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 c 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 g 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 t 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0
oligos_7nt_mkv5_m9_shift10 (oligos_7nt_mkv5_m9)				; positions_6nt_m1 versus oligos_7nt_mkv5_m9; m=12/33; ncol2=13; w=0; offset=1; strand=D; shift=10; score=0.612525; ----------caCAsACACAAam- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 c 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 g 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 t 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0
positions_6nt_m8_shift2 (positions_6nt_m8)				; positions_6nt_m1 versus positions_6nt_m8; m=13/33; ncol2=23; w=-7; offset=-7; strand=D; shift=2; score=0.609057; --caCACACACACACACACACACa ; cor=; Ncor= a 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 c 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 g 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 t 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903
positions_6nt_m9_shift1 (positions_6nt_m9)				; positions_6nt_m1 versus positions_6nt_m9; m=14/33; ncol2=24; w=-8; offset=-8; strand=D; shift=1; score=0.584313; -acaCacACACACACACACACACa ; cor=; Ncor= a 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 c 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 g 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 t 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142
dyads_m8_shift0 (dyads_m8)				; positions_6nt_m1 versus dyads_m8; m=15/33; ncol2=24; w=-9; offset=-9; strand=D; shift=0; score=0.576769; CaCACACACACACACACACACrCa ; cor=; Ncor= a 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988
dyads_m1_shift0 (dyads_m1)				; positions_6nt_m1 versus dyads_m1; m=16/33; ncol2=24; w=-9; offset=-9; strand=D; shift=0; score=0.574286; cacACACACACACACACACACaCa ; cor=; Ncor= a 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002
positions_6nt_m3_rc_shift3 (positions_6nt_m3_rc)				; positions_6nt_m1 versus positions_6nt_m3_rc; m=17/33; ncol2=24; w=-6; offset=-6; strand=R; shift=3; score=0.571575; ---mmmmmmaCACACrCACACACa ; cor=; Ncor= a 0 0 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 c 0 0 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 g 0 0 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 t 0 0 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902
positions_7nt_m7_shift0 (positions_7nt_m7)				; positions_6nt_m1 versus positions_7nt_m7; m=18/33; ncol2=24; w=-9; offset=-9; strand=D; shift=0; score=0.571444; caCACACACACACACACACACaca ; cor=; Ncor= a 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231
positions_7nt_m4_shift0 (positions_7nt_m4)				; positions_6nt_m1 versus positions_7nt_m4; m=19/33; ncol2=24; w=-9; offset=-9; strand=D; shift=0; score=0.571436; caCACACACACACACACACACaca ; cor=; Ncor= a 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233
positions_7nt_m6_shift3 (positions_7nt_m6)				; positions_6nt_m1 versus positions_7nt_m6; m=20/33; ncol2=24; w=-6; offset=-6; strand=D; shift=3; score=0.56705; ---acaCACACACACACACACACA ; cor=; Ncor= a 0 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 c 0 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 g 0 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 t 0 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508
positions_7nt_m9_shift4 (positions_7nt_m9)				; positions_6nt_m1 versus positions_7nt_m9; m=21/33; ncol2=24; w=-5; offset=-5; strand=D; shift=4; score=0.566387; ----caCACACACACACACACACA ; cor=; Ncor= a 0 0 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 c 0 0 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 g 0 0 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 t 0 0 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406
positions_7nt_m2_shift4 (positions_7nt_m2)				; positions_6nt_m1 versus positions_7nt_m2; m=22/33; ncol2=24; w=-5; offset=-5; strand=D; shift=4; score=0.565945; ----cacACACACACACACACACA ; cor=; Ncor= a 0 0 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 c 0 0 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 g 0 0 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 t 0 0 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248
positions_7nt_m10_shift3 (positions_7nt_m10)				; positions_6nt_m1 versus positions_7nt_m10; m=23/33; ncol2=24; w=-6; offset=-6; strand=D; shift=3; score=0.56547; ---acACACACACACACACACACA ; cor=; Ncor= a 0 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 c 0 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 g 0 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 t 0 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405
positions_6nt_m2_shift0 (positions_6nt_m2)				; positions_6nt_m1 versus positions_6nt_m2; m=24/33; ncol2=24; w=-9; offset=-9; strand=D; shift=0; score=0.565244; caCACACACACACACACACACaca ; cor=; Ncor= a 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111
positions_7nt_m1_shift0 (positions_7nt_m1)				; positions_6nt_m1 versus positions_7nt_m1; m=25/33; ncol2=24; w=-9; offset=-9; strand=D; shift=0; score=0.564913; cacACACACACACACACACACACa ; cor=; Ncor= a 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835
positions_7nt_m5_shift5 (positions_7nt_m5)				; positions_6nt_m1 versus positions_7nt_m5; m=26/33; ncol2=24; w=-4; offset=-4; strand=D; shift=5; score=0.564864; -----acaCACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 c 0 0 0 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 g 0 0 0 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 t 0 0 0 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287
positions_7nt_m8_shift3 (positions_7nt_m8)				; positions_6nt_m1 versus positions_7nt_m8; m=27/33; ncol2=24; w=-6; offset=-6; strand=D; shift=3; score=0.564508; ---acACACACACACACACACACA ; cor=; Ncor= a 0 0 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 c 0 0 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 g 0 0 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 t 0 0 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535
positions_6nt_m7_shift6 (positions_6nt_m7)				; positions_6nt_m1 versus positions_6nt_m7; m=28/33; ncol2=24; w=-3; offset=-3; strand=D; shift=6; score=0.563192; ------caCaCACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 c 0 0 0 0 0 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 g 0 0 0 0 0 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 t 0 0 0 0 0 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213
positions_7nt_m3_rc_shift0 (positions_7nt_m3_rc)				; positions_6nt_m1 versus positions_7nt_m3_rc; m=29/33; ncol2=24; w=-9; offset=-9; strand=R; shift=0; score=0.563148; cacACACACACACACACACACACa ; cor=; Ncor= a 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888
positions_6nt_m5_rc_shift5 (positions_6nt_m5_rc)				; positions_6nt_m1 versus positions_6nt_m5_rc; m=30/33; ncol2=24; w=-4; offset=-4; strand=R; shift=5; score=0.562444; -----acaCACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 c 0 0 0 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 g 0 0 0 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 t 0 0 0 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289
positions_6nt_m4_shift1 (positions_6nt_m4)				; positions_6nt_m1 versus positions_6nt_m4; m=31/33; ncol2=24; w=-8; offset=-8; strand=D; shift=1; score=0.560786; -acrCACACACACACACACACACa ; cor=; Ncor= a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646
positions_6nt_m10_shift0 (positions_6nt_m10)				; positions_6nt_m1 versus positions_6nt_m10; m=32/33; ncol2=24; w=-9; offset=-9; strand=D; shift=0; score=0.557954; cacamACACACACACACACACACa ; cor=; Ncor= a 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785
positions_6nt_m6_shift1 (positions_6nt_m6)				; positions_6nt_m1 versus positions_6nt_m6; m=33/33; ncol2=24; w=-8; offset=-8; strand=D; shift=1; score=0.556616; -acamACACACACACACACACACa ; cor=; Ncor= a 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 c 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 g 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 t 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m2_shift1 (positions_7nt_m2)				; positions_7nt_m2; m=0 (reference); ncol1=24; shift=1; ncol=25; -cacACACACACACACACACACACa ; Alignment reference a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894
positions_7nt_m2_shift1 (positions_7nt_m2)				; positions_7nt_m2 versus positions_7nt_m2; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894
positions_7nt_m9_shift1 (positions_7nt_m9)				; positions_7nt_m2 versus positions_7nt_m9; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.996994; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216
positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)				; positions_7nt_m2 versus positions_7nt_m3_rc; m=3/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.995373; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888
positions_7nt_m1_shift1 (positions_7nt_m1)				; positions_7nt_m2 versus positions_7nt_m1; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.992045; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835
dyads_m1_shift1 (dyads_m1)				; positions_7nt_m2 versus dyads_m1; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991564; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002
positions_7nt_m7_shift1 (positions_7nt_m7)				; positions_7nt_m2 versus positions_7nt_m7; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990022; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231
positions_6nt_m7_shift1 (positions_6nt_m7)				; positions_7nt_m2 versus positions_6nt_m7; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.988242; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062
positions_7nt_m4_shift1 (positions_7nt_m4)				; positions_7nt_m2 versus positions_7nt_m4; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987376; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233
positions_6nt_m2_shift1 (positions_6nt_m2)				; positions_7nt_m2 versus positions_6nt_m2; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.986339; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111
dyads_m8_shift1 (dyads_m8)				; positions_7nt_m2 versus dyads_m8; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.985464; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988
positions_6nt_m10_shift1 (positions_6nt_m10)				; positions_7nt_m2 versus positions_6nt_m10; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984009; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785
positions_6nt_m8_shift1 (positions_6nt_m8)				; positions_7nt_m2 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.943755; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0
positions_7nt_m5_shift2 (positions_7nt_m5)				; positions_7nt_m2 versus positions_7nt_m5; m=13/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.914548; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 c 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 g 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 t 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994
positions_6nt_m6_shift0 (positions_6nt_m6)				; positions_7nt_m2 versus positions_6nt_m6; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.912357; acamACACACACACACACACACac- ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 0 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 0 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 0 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141 0
positions_7nt_m8_shift0 (positions_7nt_m8)				; positions_7nt_m2 versus positions_7nt_m8; m=15/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.911648; acACACACACACACACACACACac- ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 0 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 0 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 0 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444 0
positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)				; positions_7nt_m2 versus positions_6nt_m5_rc; m=16/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.909032; acaCACACACACACACACACACac- ; cor=; Ncor= a 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 0 c 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 0 g 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 0 t 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346 0
positions_7nt_m6_shift2 (positions_7nt_m6)				; positions_7nt_m2 versus positions_7nt_m6; m=17/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.908983; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 c 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 g 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 t 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108
positions_7nt_m10_shift0 (positions_7nt_m10)				; positions_7nt_m2 versus positions_7nt_m10; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908486; acACACACACACACACACACACaC- ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 0 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 0 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 0 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221 0
positions_6nt_m4_shift2 (positions_6nt_m4)				; positions_7nt_m2 versus positions_6nt_m4; m=19/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.907128; --acrCACACACACACACACACACa ; cor=; Ncor= a 0 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 c 0 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 g 0 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 t 0 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646
positions_6nt_m9_shift0 (positions_6nt_m9)				; positions_7nt_m2 versus positions_6nt_m9; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.89924; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0
positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)				; positions_7nt_m2 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.865319; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0
dyads_m10_shift2 (dyads_m10)				; positions_7nt_m2 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=1; strand=D; shift=2; score=0.736123; --ACACACACACACACrCAC----- ; cor=; Ncor= a 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 0 0 0 0 c 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 0 0 0 0 g 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 0 0 0 0 t 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0 0 0 0 0
oligos_7nt_mkv5_m8_shift6 (oligos_7nt_mkv5_m8)				; positions_7nt_m2 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=5; strand=D; shift=6; score=0.656661; ------ACACACACACACACAC--- ; cor=; Ncor= a 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 0 c 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 0 g 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 0 t 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0 0
oligos_6nt_mkv4_m5_rc_shift4 (oligos_6nt_mkv4_m5_rc)				; positions_7nt_m2 versus oligos_6nt_mkv4_m5_rc; m=24/33; ncol2=16; w=0; offset=3; strand=R; shift=4; score=0.608027; ----acAsACACrCACAsac----- ; cor=; Ncor= a 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 0 0 0 c 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 0 0 0 g 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 0 0 0 t 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0 0 0 0
oligos_6nt_mkv4_m2_shift9 (oligos_6nt_mkv4_m2)				; positions_7nt_m2 versus oligos_6nt_mkv4_m2; m=25/33; ncol2=16; w=0; offset=8; strand=D; shift=9; score=0.591737; ---------caCwCACAyACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 c 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 g 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 t 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421
dyads_m7_shift1 (dyads_m7)				; positions_7nt_m2 versus dyads_m7; m=26/33; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.582325; -camACACACACrCac--------- ; cor=; Ncor= a 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 0 0 c 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 0 0 g 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 0 0 t 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0 0 0
positions_6nt_m1_shift6 (positions_6nt_m1)				; positions_7nt_m2 versus positions_6nt_m1; m=27/33; ncol2=15; w=0; offset=5; strand=D; shift=6; score=0.565945; ------acACACrCACACrca---- ; cor=; Ncor= a 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 0 0 0 c 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 0 0 0 g 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 0 0 0 t 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0 0 0 0
oligos_7nt_mkv5_m4_shift11 (oligos_7nt_mkv5_m4)				; positions_7nt_m2 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.522033; -----------caCACAcACACac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 c 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 g 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 t 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0
dyads_m9_shift1 (dyads_m9)				; positions_7nt_m2 versus dyads_m9; m=29/33; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.510435; -caAACACACACmca---------- ; cor=; Ncor= a 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 0 0 0 c 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 0 0 0 g 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 0 0 0 t 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m5_shift7 (oligos_7nt_mkv5_m5)				; positions_7nt_m2 versus oligos_7nt_mkv5_m5; m=30/33; ncol2=14; w=0; offset=6; strand=D; shift=7; score=0.50041; -------caCACGCACACmca---- ; cor=; Ncor= a 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 0 c 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 0 g 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 0 t 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0 0
dyads_m4_shift1 (dyads_m4)				; positions_7nt_m2 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.489373; -camACACACrCaC----------- ; cor=; Ncor= a 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 0 0 0 c 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 0 0 0 g 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 0 0 0 t 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0 0 0 0
dyads_m6_shift1 (dyads_m6)				; positions_7nt_m2 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.489006; -camACACACAyac----------- ; cor=; Ncor= a 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 0 0 0 c 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 0 0 0 g 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 0 0 0 t 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m9_shift9 (oligos_7nt_mkv5_m9)				; positions_7nt_m2 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=8; strand=D; shift=9; score=0.420606; ---------caCAsACACAAam--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 0 c 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 0 g 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 0 t 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)				; oligos_7nt_mkv5_m8; m=0 (reference); ncol1=16; shift=8; ncol=24; --------ACACACACACACACAC ; Alignment reference a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224
oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)				; oligos_7nt_mkv5_m8 versus oligos_7nt_mkv5_m8; m=1/33; ncol2=16; w=0; offset=0; strand=D; shift=8; score= 1; --------ACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224
oligos_6nt_mkv4_m5_rc_shift8 (oligos_6nt_mkv4_m5_rc)				; oligos_7nt_mkv5_m8 versus oligos_6nt_mkv4_m5_rc; m=2/33; ncol2=16; w=0; offset=0; strand=R; shift=8; score=0.912141; --------acAsACACrCACAsac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 c 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 g 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 t 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214
dyads_m10_shift6 (dyads_m10)				; oligos_7nt_mkv5_m8 versus dyads_m10; m=3/33; ncol2=18; w=-2; offset=-2; strand=D; shift=6; score=0.872418; ------ACACACACACACACrCAC ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123
positions_6nt_m1_shift8 (positions_6nt_m1)				; oligos_7nt_mkv5_m8 versus positions_6nt_m1; m=4/33; ncol2=15; w=0; offset=0; strand=D; shift=8; score=0.838054; --------acACACrCACACrca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 c 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 g 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 t 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0
dyads_m7_shift9 (dyads_m7)				; oligos_7nt_mkv5_m8 versus dyads_m7; m=5/33; ncol2=15; w=0; offset=1; strand=D; shift=9; score=0.826817; ---------camACACACACrCac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 c 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 g 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 t 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517
oligos_6nt_mkv4_m2_shift7 (oligos_6nt_mkv4_m2)				; oligos_7nt_mkv5_m8 versus oligos_6nt_mkv4_m2; m=6/33; ncol2=16; w=-1; offset=-1; strand=D; shift=7; score=0.807829; -------caCwCACAyACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 c 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 g 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 t 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0
oligos_7nt_mkv5_m4_shift9 (oligos_7nt_mkv5_m4)				; oligos_7nt_mkv5_m8 versus oligos_7nt_mkv5_m4; m=7/33; ncol2=13; w=0; offset=1; strand=D; shift=9; score=0.793847; ---------caCACAcACACac-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 c 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 g 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 t 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0
oligos_7nt_mkv5_m5_shift9 (oligos_7nt_mkv5_m5)				; oligos_7nt_mkv5_m8 versus oligos_7nt_mkv5_m5; m=8/33; ncol2=14; w=0; offset=1; strand=D; shift=9; score=0.731657; ---------caCACGCACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 c 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 g 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 t 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0
dyads_m9_shift9 (dyads_m9)				; oligos_7nt_mkv5_m8 versus dyads_m9; m=9/33; ncol2=14; w=0; offset=1; strand=D; shift=9; score=0.730385; ---------caAACACACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 c 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 g 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 t 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0
dyads_m6_shift11 (dyads_m6)				; oligos_7nt_mkv5_m8 versus dyads_m6; m=10/33; ncol2=13; w=0; offset=3; strand=D; shift=11; score=0.707559; -----------camACACACAyac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 c 0 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 g 0 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 t 0 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355
dyads_m4_shift9 (dyads_m4)				; oligos_7nt_mkv5_m8 versus dyads_m4; m=11/33; ncol2=13; w=0; offset=1; strand=D; shift=9; score=0.696853; ---------camACACACrCaC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 c 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 g 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 t 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0
positions_6nt_m8_shift3 (positions_6nt_m8)				; oligos_7nt_mkv5_m8 versus positions_6nt_m8; m=12/33; ncol2=23; w=-5; offset=-5; strand=D; shift=3; score=0.686766; ---caCACACACACACACACACAC ; cor=; Ncor= a 0 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 c 0 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 g 0 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 t 0 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470
positions_6nt_m4_shift0 (positions_6nt_m4)				; oligos_7nt_mkv5_m8 versus positions_6nt_m4; m=13/33; ncol2=24; w=-8; offset=-8; strand=D; shift=0; score=0.663169; acrCACACACACACACACACACac ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762
positions_6nt_m2_shift1 (positions_6nt_m2)				; oligos_7nt_mkv5_m8 versus positions_6nt_m2; m=14/33; ncol2=24; w=-7; offset=-7; strand=D; shift=1; score=0.662497; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256
positions_6nt_m10_shift3 (positions_6nt_m10)				; oligos_7nt_mkv5_m8 versus positions_6nt_m10; m=15/33; ncol2=24; w=-5; offset=-5; strand=D; shift=3; score=0.66245; ---cacamACACACACACACACAC ; cor=; Ncor= a 0 0 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 c 0 0 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 g 0 0 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 t 0 0 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506
positions_6nt_m6_shift4 (positions_6nt_m6)				; oligos_7nt_mkv5_m8 versus positions_6nt_m6; m=16/33; ncol2=24; w=-4; offset=-4; strand=D; shift=4; score=0.662311; ----acamACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 c 0 0 0 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 g 0 0 0 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 t 0 0 0 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618
positions_7nt_m7_shift1 (positions_7nt_m7)				; oligos_7nt_mkv5_m8 versus positions_7nt_m7; m=17/33; ncol2=24; w=-7; offset=-7; strand=D; shift=1; score=0.661346; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313
oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)				; oligos_7nt_mkv5_m8 versus oligos_7nt_mkv5_m9; m=18/33; ncol2=13; w=0; offset=3; strand=D; shift=11; score=0.66036; -----------caCAsACACAAam ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270
positions_7nt_m10_shift4 (positions_7nt_m10)				; oligos_7nt_mkv5_m8 versus positions_7nt_m10; m=19/33; ncol2=24; w=-4; offset=-4; strand=D; shift=4; score=0.660292; ----acACACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 c 0 0 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 g 0 0 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 t 0 0 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507
dyads_m8_shift1 (dyads_m8)				; oligos_7nt_mkv5_m8 versus dyads_m8; m=20/33; ncol2=24; w=-7; offset=-7; strand=D; shift=1; score=0.660292; -CaCACACACACACACACACACrC ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049
positions_7nt_m6_shift4 (positions_7nt_m6)				; oligos_7nt_mkv5_m8 versus positions_7nt_m6; m=21/33; ncol2=24; w=-4; offset=-4; strand=D; shift=4; score=0.659955; ----acaCACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 c 0 0 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 g 0 0 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 t 0 0 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613
positions_6nt_m5_rc_shift6 (positions_6nt_m5_rc)				; oligos_7nt_mkv5_m8 versus positions_6nt_m5_rc; m=22/33; ncol2=24; w=-2; offset=-2; strand=R; shift=6; score=0.659423; ------acaCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 c 0 0 0 0 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 g 0 0 0 0 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 t 0 0 0 0 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514
positions_7nt_m4_shift3 (positions_7nt_m4)				; oligos_7nt_mkv5_m8 versus positions_7nt_m4; m=23/33; ncol2=24; w=-5; offset=-5; strand=D; shift=3; score=0.659132; ---caCACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 c 0 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 g 0 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 t 0 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528
positions_7nt_m8_shift0 (positions_7nt_m8)				; oligos_7nt_mkv5_m8 versus positions_7nt_m8; m=24/33; ncol2=24; w=-8; offset=-8; strand=D; shift=0; score=0.658481; acACACACACACACACACACACac ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444
dyads_m1_shift1 (dyads_m1)				; oligos_7nt_mkv5_m8 versus dyads_m1; m=25/33; ncol2=24; w=-7; offset=-7; strand=D; shift=1; score=0.657608; -cacACACACACACACACACACaC ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034
positions_6nt_m9_shift2 (positions_6nt_m9)				; oligos_7nt_mkv5_m8 versus positions_6nt_m9; m=26/33; ncol2=24; w=-6; offset=-6; strand=D; shift=2; score=0.657234; --acaCacACACACACACACACAC ; cor=; Ncor= a 0 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 c 0 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 g 0 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 t 0 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820
positions_7nt_m9_shift3 (positions_7nt_m9)				; oligos_7nt_mkv5_m8 versus positions_7nt_m9; m=27/33; ncol2=24; w=-5; offset=-5; strand=D; shift=3; score=0.656961; ---caCACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 c 0 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 g 0 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 t 0 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783
positions_7nt_m2_shift3 (positions_7nt_m2)				; oligos_7nt_mkv5_m8 versus positions_7nt_m2; m=28/33; ncol2=24; w=-5; offset=-5; strand=D; shift=3; score=0.656661; ---cacACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 c 0 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 g 0 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 t 0 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564
positions_7nt_m3_rc_shift3 (positions_7nt_m3_rc)				; oligos_7nt_mkv5_m8 versus positions_7nt_m3_rc; m=29/33; ncol2=24; w=-5; offset=-5; strand=R; shift=3; score=0.656356; ---cacACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 c 0 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 g 0 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 t 0 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536
positions_7nt_m5_shift4 (positions_7nt_m5)				; oligos_7nt_mkv5_m8 versus positions_7nt_m5; m=30/33; ncol2=24; w=-4; offset=-4; strand=D; shift=4; score=0.655631; ----acaCACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 c 0 0 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 g 0 0 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 t 0 0 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493
positions_7nt_m1_shift5 (positions_7nt_m1)				; oligos_7nt_mkv5_m8 versus positions_7nt_m1; m=31/33; ncol2=24; w=-3; offset=-3; strand=D; shift=5; score=0.65508; -----cacACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 c 0 0 0 0 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 g 0 0 0 0 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 t 0 0 0 0 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307
positions_6nt_m7_shift1 (positions_6nt_m7)				; oligos_7nt_mkv5_m8 versus positions_6nt_m7; m=32/33; ncol2=24; w=-7; offset=-7; strand=D; shift=1; score=0.65446; -caCaCACACACACACACACACAC ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139
positions_6nt_m3_rc_shift2 (positions_6nt_m3_rc)				; oligos_7nt_mkv5_m8 versus positions_6nt_m3_rc; m=33/33; ncol2=24; w=-6; offset=-6; strand=R; shift=2; score=0.652173; --mmmmmmaCACACrCACACACaC ; cor=; Ncor= a 0 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 c 0 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 g 0 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 t 0 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m1_shift1 (positions_7nt_m1)				; positions_7nt_m1; m=0 (reference); ncol1=24; shift=1; ncol=25; -cacACACACACACACACACACACa ; Alignment reference a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835
positions_7nt_m1_shift1 (positions_7nt_m1)				; positions_7nt_m1 versus positions_7nt_m1; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835
positions_6nt_m7_shift1 (positions_6nt_m7)				; positions_7nt_m1 versus positions_6nt_m7; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.996777; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062
dyads_m1_shift1 (dyads_m1)				; positions_7nt_m1 versus dyads_m1; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.994944; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002
positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)				; positions_7nt_m1 versus positions_7nt_m3_rc; m=4/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.994441; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888
positions_7nt_m2_shift1 (positions_7nt_m2)				; positions_7nt_m1 versus positions_7nt_m2; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.992045; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894
positions_7nt_m7_shift1 (positions_7nt_m7)				; positions_7nt_m1 versus positions_7nt_m7; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989526; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231
positions_7nt_m9_shift1 (positions_7nt_m9)				; positions_7nt_m1 versus positions_7nt_m9; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989155; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216
positions_7nt_m4_shift1 (positions_7nt_m4)				; positions_7nt_m1 versus positions_7nt_m4; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987347; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233
dyads_m8_shift1 (dyads_m8)				; positions_7nt_m1 versus dyads_m8; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.98522; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988
positions_6nt_m2_shift1 (positions_6nt_m2)				; positions_7nt_m1 versus positions_6nt_m2; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984898; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111
positions_6nt_m10_shift1 (positions_6nt_m10)				; positions_7nt_m1 versus positions_6nt_m10; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.981816; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785
positions_6nt_m8_shift1 (positions_6nt_m8)				; positions_7nt_m1 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.942915; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0
positions_7nt_m5_shift0 (positions_7nt_m5)				; positions_7nt_m1 versus positions_7nt_m5; m=13/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.915553; acaCACACACACACACACACACac- ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 0 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 0 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 0 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250 0
positions_6nt_m6_shift0 (positions_6nt_m6)				; positions_7nt_m1 versus positions_6nt_m6; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.912482; acamACACACACACACACACACac- ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 0 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 0 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 0 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141 0
positions_6nt_m4_shift2 (positions_6nt_m4)				; positions_7nt_m1 versus positions_6nt_m4; m=15/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910878; --acrCACACACACACACACACACa ; cor=; Ncor= a 0 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 c 0 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 g 0 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 t 0 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646
positions_6nt_m5_rc_shift2 (positions_6nt_m5_rc)				; positions_7nt_m1 versus positions_6nt_m5_rc; m=16/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.909991; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 c 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 g 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 t 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032
positions_7nt_m8_shift2 (positions_7nt_m8)				; positions_7nt_m1 versus positions_7nt_m8; m=17/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.909199; --acACACACACACACACACACACa ; cor=; Ncor= a 0 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 c 0 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 g 0 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 t 0 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222
positions_7nt_m6_shift2 (positions_7nt_m6)				; positions_7nt_m1 versus positions_7nt_m6; m=18/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.909154; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 c 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 g 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 t 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108
positions_7nt_m10_shift0 (positions_7nt_m10)				; positions_7nt_m1 versus positions_7nt_m10; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908302; acACACACACACACACACACACaC- ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 0 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 0 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 0 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221 0
positions_6nt_m9_shift0 (positions_6nt_m9)				; positions_7nt_m1 versus positions_6nt_m9; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.899516; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0
positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)				; positions_7nt_m1 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.860104; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0
dyads_m10_shift6 (dyads_m10)				; positions_7nt_m1 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=5; strand=D; shift=6; score=0.734497; ------ACACACACACACACrCAC- ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0
oligos_7nt_mkv5_m8_shift4 (oligos_7nt_mkv5_m8)				; positions_7nt_m1 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=3; strand=D; shift=4; score=0.65508; ----ACACACACACACACAC----- ; cor=; Ncor= a 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 0 0 0 c 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 0 0 0 g 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 0 0 0 t 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0 0 0 0
oligos_6nt_mkv4_m2_shift9 (oligos_6nt_mkv4_m2)				; positions_7nt_m1 versus oligos_6nt_mkv4_m2; m=24/33; ncol2=16; w=0; offset=8; strand=D; shift=9; score=0.610085; ---------caCwCACAyACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 c 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 g 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 t 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421
oligos_6nt_mkv4_m5_rc_shift2 (oligos_6nt_mkv4_m5_rc)				; positions_7nt_m1 versus oligos_6nt_mkv4_m5_rc; m=25/33; ncol2=16; w=0; offset=1; strand=R; shift=2; score=0.607777; --acAsACACrCACAsac------- ; cor=; Ncor= a 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 0 0 0 0 0 c 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 0 0 0 0 0 g 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 0 0 0 0 0 t 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0 0 0 0 0 0
dyads_m7_shift1 (dyads_m7)				; positions_7nt_m1 versus dyads_m7; m=26/33; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.567138; -camACACACACrCac--------- ; cor=; Ncor= a 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 0 0 c 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 0 0 g 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 0 0 t 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0 0 0
positions_6nt_m1_shift10 (positions_6nt_m1)				; positions_7nt_m1 versus positions_6nt_m1; m=27/33; ncol2=15; w=0; offset=9; strand=D; shift=10; score=0.564913; ----------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601
oligos_7nt_mkv5_m4_shift11 (oligos_7nt_mkv5_m4)				; positions_7nt_m1 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.526163; -----------caCACAcACACac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 c 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 g 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 t 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0
dyads_m9_shift1 (dyads_m9)				; positions_7nt_m1 versus dyads_m9; m=29/33; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.500735; -caAACACACACmca---------- ; cor=; Ncor= a 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 0 0 0 c 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 0 0 0 g 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 0 0 0 t 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m5_shift5 (oligos_7nt_mkv5_m5)				; positions_7nt_m1 versus oligos_7nt_mkv5_m5; m=30/33; ncol2=14; w=0; offset=4; strand=D; shift=5; score=0.499369; -----caCACGCACACmca------ ; cor=; Ncor= a 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 0 0 0 c 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 0 0 0 g 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 0 0 0 t 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0 0 0 0
dyads_m4_shift1 (dyads_m4)				; positions_7nt_m1 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.498469; -camACACACrCaC----------- ; cor=; Ncor= a 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 0 0 0 c 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 0 0 0 g 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 0 0 0 t 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0 0 0 0
dyads_m6_shift1 (dyads_m6)				; positions_7nt_m1 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.481126; -camACACACAyac----------- ; cor=; Ncor= a 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 0 0 0 c 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 0 0 0 g 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 0 0 0 t 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m9_shift7 (oligos_7nt_mkv5_m9)				; positions_7nt_m1 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=6; strand=D; shift=7; score=0.418029; -------caCAsACACAAam----- ; cor=; Ncor= a 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 0 0 0 c 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 0 0 0 g 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 0 0 0 t 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m5_shift7 (oligos_6nt_mkv4_m5)				; oligos_6nt_mkv4_m5; m=0 (reference); ncol1=16; shift=7; ncol=23; -------gtsTGTGyGTGTsTgt ; Alignment reference a 0 0 0 0 0 0 0 214 180 62 30 40 21 22 21 20 16 41 12 98 13 202 129 c 0 0 0 0 0 0 0 294 260 792 62 50 39 43 1077 48 32 62 38 611 57 217 297 g 0 0 0 0 0 0 0 895 280 760 38 1580 14 1604 24 1593 23 1556 28 898 67 1041 211 t 0 0 0 0 0 0 0 294 977 83 1567 27 1623 28 575 36 1626 38 1619 90 1560 237 1060
oligos_6nt_mkv4_m5_shift7 (oligos_6nt_mkv4_m5)				; oligos_6nt_mkv4_m5 versus oligos_6nt_mkv4_m5; m=1/33; ncol2=16; w=0; offset=0; strand=D; shift=7; score= 1; -------gtsTGTGyGTGTsTgt ; cor=; Ncor= a 0 0 0 0 0 0 0 214 180 62 30 40 21 22 21 20 16 41 12 98 13 202 129 c 0 0 0 0 0 0 0 294 260 792 62 50 39 43 1077 48 32 62 38 611 57 217 297 g 0 0 0 0 0 0 0 895 280 760 38 1580 14 1604 24 1593 23 1556 28 898 67 1041 211 t 0 0 0 0 0 0 0 294 977 83 1567 27 1623 28 575 36 1626 38 1619 90 1560 237 1060
oligos_7nt_mkv5_m8_rc_shift7 (oligos_7nt_mkv5_m8_rc)				; oligos_6nt_mkv4_m5 versus oligos_7nt_mkv5_m8_rc; m=2/33; ncol2=16; w=0; offset=0; strand=R; shift=7; score=0.912141; -------GTGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 1224 929 839 201 176 67 180 73 1978 55 133 73 155 65 855 646 c 0 0 0 0 0 0 0 1137 1414 1684 216 131 141 98 144 261 127 82 126 68 157 434 1252 g 0 0 0 0 0 0 0 7805 1031 8182 199 10841 68 10901 61 8641 55 10953 81 10941 72 9006 930 t 0 0 0 0 0 0 0 1079 7871 540 10629 97 10969 66 10967 365 11008 77 10965 81 10951 950 8417
dyads_m10_rc_shift5 (dyads_m10_rc)				; oligos_6nt_mkv4_m5 versus dyads_m10_rc; m=3/33; ncol2=18; w=-2; offset=-2; strand=R; shift=5; score=0.802024; -----GTGyGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 1123 902 380 480 221 201 229 125 245 110 261 88 252 141 2074 220 1055 739 c 0 0 0 0 0 877 1578 284 2725 180 355 87 269 69 179 64 171 86 208 286 342 600 1101 g 0 0 0 0 0 7303 744 9327 320 9671 113 9764 42 9807 58 9760 75 9753 129 7314 282 7513 1135 t 0 0 0 0 0 910 6989 222 6688 141 9544 133 9777 92 9866 128 9879 122 9735 539 9369 1045 7238
dyads_m7_rc_shift7 (dyads_m7_rc)				; oligos_6nt_mkv4_m5 versus dyads_m7_rc; m=4/33; ncol2=15; w=0; offset=0; strand=R; shift=7; score=0.767286; -------gtGyGTGTGTGTktg- ; cor=; Ncor= a 0 0 0 0 0 0 0 517 558 135 252 91 114 108 66 93 41 140 90 360 465 523 0 c 0 0 0 0 0 0 0 435 757 151 2268 81 139 38 113 52 94 64 100 139 495 453 0 g 0 0 0 0 0 0 0 2402 446 3437 176 3585 79 3616 30 3629 51 3543 97 1297 728 2128 0 t 0 0 0 0 0 0 0 496 2089 127 1154 93 3518 88 3641 76 3664 103 3563 2054 2162 746 0
positions_6nt_m1_rc_shift6 (positions_6nt_m1_rc)				; oligos_6nt_mkv4_m5 versus positions_6nt_m1_rc; m=5/33; ncol2=15; w=-1; offset=-1; strand=R; shift=6; score=0.760388; ------tgyGTGTGyGTGTgt-- ; cor=; Ncor= a 0 0 0 0 0 0 601 605 225 67 97 116 76 116 173 108 91 120 116 572 350 0 0 c 0 0 0 0 0 0 858 565 2345 89 179 54 193 61 2125 74 121 63 179 284 560 0 0 g 0 0 0 0 0 0 601 2074 237 3576 91 3556 25 3555 73 3551 54 3524 54 2532 435 0 0 t 0 0 0 0 0 0 1745 561 998 73 3438 79 3511 73 1434 72 3539 98 3456 417 2460 0 0
oligos_7nt_mkv5_m4_rc_shift9 (oligos_7nt_mkv5_m4_rc)				; oligos_6nt_mkv4_m5 versus oligos_7nt_mkv5_m4_rc; m=6/33; ncol2=13; w=0; offset=2; strand=R; shift=9; score=0.711097; ---------gtGTGTgTGTGtg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1279 913 50 29 50 48 740 84 53 42 83 726 1242 0 c 0 0 0 0 0 0 0 0 0 1022 1381 57 101 17 96 257 67 42 67 47 1558 663 0 g 0 0 0 0 0 0 0 0 0 5541 804 8808 48 8906 99 5812 265 8848 44 8776 794 5506 0 t 0 0 0 0 0 0 0 0 0 1185 5929 112 8849 54 8784 2218 8611 84 8874 121 5949 1616 0
dyads_m9_rc_shift8 (dyads_m9_rc)				; oligos_6nt_mkv4_m5 versus dyads_m9_rc; m=7/33; ncol2=14; w=0; offset=1; strand=R; shift=8; score=0.699925; --------tgkGTGTGTGTTtg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 431 373 145 79 87 64 61 91 50 108 86 176 374 356 0 c 0 0 0 0 0 0 0 0 441 464 152 70 30 32 47 48 57 43 67 63 345 367 0 g 0 0 0 0 0 0 0 0 555 1329 1505 2482 99 2538 87 2487 56 2450 94 478 637 1305 0 t 0 0 0 0 0 0 0 0 1266 527 891 62 2477 59 2498 67 2530 92 2446 1976 1337 665 0
oligos_6nt_mkv4_m2_rc_shift6 (oligos_6nt_mkv4_m2_rc)				; oligos_6nt_mkv4_m5 versus oligos_6nt_mkv4_m2_rc; m=8/33; ncol2=16; w=-1; offset=-1; strand=R; shift=6; score=0.697932; ------tgkGTGTrTGTGwGtg- ; cor=; Ncor= a 0 0 0 0 0 0 421 362 158 100 83 79 61 1618 50 69 71 78 840 208 394 410 0 c 0 0 0 0 0 0 432 382 215 95 70 38 26 41 50 23 68 33 231 117 379 219 0 g 0 0 0 0 0 0 465 1338 1092 2225 94 2331 75 757 70 2376 82 2340 137 1970 351 1513 0 t 0 0 0 0 0 0 1178 414 1031 76 2249 48 2334 80 2326 28 2275 45 1288 201 1372 354 0
oligos_7nt_mkv5_m5_rc_shift6 (oligos_7nt_mkv5_m5_rc)				; oligos_6nt_mkv4_m5 versus oligos_7nt_mkv5_m5_rc; m=9/33; ncol2=14; w=-1; offset=-1; strand=R; shift=6; score=0.694767; ------tgkGTGTGCGTGtg--- ; cor=; Ncor= a 0 0 0 0 0 0 501 418 166 38 69 62 55 56 82 45 114 206 388 389 0 0 0 c 0 0 0 0 0 0 545 526 155 67 60 21 64 40 2153 48 87 123 595 280 0 0 0 g 0 0 0 0 0 0 628 1283 1562 2700 70 2733 45 2718 96 2713 95 2317 359 1722 0 0 0 t 0 0 0 0 0 0 1177 624 968 46 2652 35 2687 37 520 45 2555 205 1509 460 0 0 0
dyads_m4_rc_shift11 (dyads_m4_rc)				; oligos_6nt_mkv4_m5 versus dyads_m4_rc; m=10/33; ncol2=13; w=0; offset=4; strand=R; shift=11; score=0.653662; -----------GtGyGTGTGTkt ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 355 343 33 99 27 36 31 12 42 33 142 267 c 0 0 0 0 0 0 0 0 0 0 0 304 608 51 2134 21 45 18 53 25 60 68 403 g 0 0 0 0 0 0 0 0 0 0 0 2240 251 3147 50 3190 33 3160 14 3156 52 1096 667 t 0 0 0 0 0 0 0 0 0 0 0 370 2067 38 986 31 3155 60 3190 46 3124 1963 1932
dyads_m6_rc_shift9 (dyads_m6_rc)				; oligos_6nt_mkv4_m5 versus dyads_m6_rc; m=11/33; ncol2=13; w=0; offset=2; strand=R; shift=9; score=0.651583; ---------gtrTGTGTGTktg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 355 344 1805 52 47 18 44 9 38 44 144 270 345 0 c 0 0 0 0 0 0 0 0 0 351 415 98 30 24 19 21 30 15 33 48 362 346 0 g 0 0 0 0 0 0 0 0 0 1939 432 987 41 2937 28 2942 17 2945 41 936 619 1706 0 t 0 0 0 0 0 0 0 0 0 393 1847 148 2915 30 2973 31 2982 40 2920 1910 1787 641 0
positions_6nt_m8_rc_shift5 (positions_6nt_m8_rc)				; oligos_6nt_mkv4_m5 versus positions_6nt_m8_rc; m=12/33; ncol2=23; w=-2; offset=-2; strand=R; shift=5; score=0.639281; -----gtGTGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 2027 1903 1470 1957 604 497 484 365 524 569 504 339 344 386 416 450 498 1550 c 0 0 0 0 0 1746 2595 1257 1950 373 939 152 663 182 2809 217 484 129 687 144 545 238 1753 g 0 0 0 0 0 10165 1687 11817 975 14341 246 14838 109 14777 257 14687 93 14960 95 14844 217 14478 861 t 0 0 0 0 0 1738 9491 1132 10794 358 13994 202 14539 193 12041 268 14760 243 14508 272 14464 462 11512
positions_6nt_m9_rc_shift5 (positions_6nt_m9_rc)				; oligos_6nt_mkv4_m5 versus positions_6nt_m9_rc; m=13/33; ncol2=24; w=-2; offset=-2; strand=R; shift=5; score=0.61447; -----gtGTGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 1244 1142 820 1256 194 189 204 139 193 331 227 127 141 140 223 178 300 631 c 0 0 0 0 0 1023 1499 660 1051 129 337 54 217 60 1952 105 195 49 300 61 256 151 1076 g 0 0 0 0 0 6677 1066 7825 511 9519 85 9636 49 9623 131 9499 64 9641 71 9522 169 9166 1286 t 0 0 0 0 0 1014 6251 653 7140 116 9347 64 9553 82 7544 127 9572 127 9447 152 9355 341 6965
positions_6nt_m5_shift7 (positions_6nt_m5)				; oligos_6nt_mkv4_m5 versus positions_6nt_m5; m=14/33; ncol2=24; w=0; offset=0; strand=D; shift=7; score=0.613865; -------gtGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 1346 1032 551 401 483 289 514 399 451 199 332 158 302 182 1358 236 c 0 0 0 0 0 0 0 1227 1705 484 910 233 703 215 2098 217 435 134 432 125 324 309 401 g 0 0 0 0 0 0 0 7409 910 9651 267 10093 179 10142 222 10215 79 10428 65 10505 130 8894 160 t 0 0 0 0 0 0 0 1092 7427 388 9496 265 9903 203 8355 191 10361 180 10419 142 10438 513 10277
positions_7nt_m9_rc_shift2 (positions_7nt_m9_rc)				; oligos_6nt_mkv4_m5 versus positions_7nt_m9_rc; m=15/33; ncol2=24; w=-5; offset=-5; strand=R; shift=2; score=0.608195; --tGTGTGTGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 1216 1316 715 783 406 1897 235 393 183 379 131 290 372 339 215 319 301 392 352 500 1229 c 0 0 1899 1199 1124 580 684 490 445 162 446 113 311 114 1786 152 319 121 508 126 546 258 1409 g 0 0 1299 7853 718 9602 363 8573 183 10752 97 10823 59 10909 170 10756 82 10771 118 10624 268 10214 830 t 0 0 7027 1073 8884 476 9988 481 10578 134 10715 126 10940 128 9113 194 10825 230 10514 299 10275 469 7973
positions_7nt_m2_rc_shift2 (positions_7nt_m2_rc)				; oligos_6nt_mkv4_m5 versus positions_7nt_m2_rc; m=16/33; ncol2=24; w=-5; offset=-5; strand=R; shift=2; score=0.608027; --tGTGTGTGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 894 970 487 564 248 1509 149 276 111 260 84 215 249 231 126 208 132 256 144 323 247 c 0 0 1394 902 772 424 457 379 335 105 320 82 212 68 1356 100 243 80 342 101 361 164 486 g 0 0 947 6171 492 7523 255 6600 130 8357 61 8409 35 8459 116 8362 64 8364 59 8219 166 7949 392 t 0 0 5592 784 7076 316 7867 339 8213 89 8335 76 8496 85 7106 134 8394 175 8294 251 8156 391 7702
positions_7nt_m5_rc_shift1 (positions_7nt_m5_rc)				; oligos_6nt_mkv4_m5 versus positions_7nt_m5_rc; m=17/33; ncol2=24; w=-6; offset=-6; strand=R; shift=1; score=0.607868; -gtGTGTGTGTGTGTGTGTGTGt ; cor=; Ncor= a 0 1250 994 561 341 493 287 1613 213 397 172 334 119 291 341 371 214 368 280 461 360 618 826 c 0 1186 1587 433 624 243 588 371 397 146 427 107 288 103 1667 160 370 137 524 163 587 309 1405 g 0 7163 872 9224 281 9623 225 8200 138 9935 76 10047 63 10067 195 9846 124 9804 184 9612 358 9032 1361 t 0 1002 7148 383 9355 242 9501 417 9853 123 9926 113 10131 140 8398 224 9893 292 9613 365 9296 642 7009
positions_7nt_m1_rc_shift0 (positions_7nt_m1_rc)				; oligos_6nt_mkv4_m5 versus positions_7nt_m1_rc; m=18/33; ncol2=24; w=-7; offset=-7; strand=R; shift=0; score=0.607777; tGTGTGTGTGTGTGTGTGTGTgt ; cor=; Ncor= a 835 882 469 306 163 307 147 1313 120 219 92 212 76 195 277 258 149 227 185 338 296 741 717 c 1236 789 702 195 364 142 336 247 224 102 258 48 194 64 1329 135 291 101 426 146 506 367 1070 g 847 6045 381 7681 128 7824 115 6542 74 7992 50 8052 33 8024 162 7821 93 7819 142 7519 416 5354 1145 t 5474 676 6840 210 7737 119 7794 290 7974 79 7992 80 8089 109 6624 178 7859 245 7639 389 7174 1930 5460
positions_7nt_m8_rc_shift3 (positions_7nt_m8_rc)				; oligos_6nt_mkv4_m5 versus positions_7nt_m8_rc; m=19/33; ncol2=24; w=-4; offset=-4; strand=R; shift=3; score=0.607303; ---gtGTGTGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 1444 1222 1288 535 510 246 411 166 389 172 426 358 318 186 312 216 380 313 874 626 c 0 0 0 1459 1853 1524 768 336 457 179 498 140 418 144 1997 165 363 142 547 183 542 484 976 g 0 0 0 8000 1299 8529 466 11129 175 11460 86 11558 62 11510 203 11550 81 11502 121 11271 382 8585 957 t 0 0 0 1326 7855 888 10460 254 11351 179 11479 142 11577 149 9671 196 11599 273 11345 395 10992 2286 9670
positions_6nt_m4_rc_shift7 (positions_6nt_m4_rc)				; oligos_6nt_mkv4_m5 versus positions_6nt_m4_rc; m=20/33; ncol2=24; w=0; offset=0; strand=R; shift=7; score=0.60506; -------gtGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 762 646 603 213 196 96 195 83 456 63 157 51 129 66 913 91 c 0 0 0 0 0 0 0 740 871 744 264 142 188 80 170 205 128 65 125 50 120 154 152 g 0 0 0 0 0 0 0 4259 642 4643 168 5939 80 6014 65 5114 66 6086 32 6144 58 5055 64 t 0 0 0 0 0 0 0 621 4223 392 5737 105 6018 93 6064 607 6125 74 6174 59 6138 260 6075
positions_7nt_m3_shift0 (positions_7nt_m3)				; oligos_6nt_mkv4_m5 versus positions_7nt_m3; m=21/33; ncol2=24; w=-7; offset=-7; strand=D; shift=0; score=0.604503; tGTGTGTGTGTGTGTGTGTGTgt ; cor=; Ncor= a 888 963 461 536 226 1564 180 293 127 244 96 220 105 246 267 248 144 260 184 326 294 1779 767 c 1351 874 789 386 460 344 358 128 215 77 271 55 232 87 1392 111 276 102 429 167 498 385 1201 g 905 6174 469 7546 225 6546 139 8227 64 8363 43 8415 47 8319 124 8240 82 8182 167 7963 345 5777 1038 t 5629 762 7054 305 7862 319 8096 125 8367 89 8363 83 8389 121 6990 174 8271 229 7993 317 7636 832 5767
dyads_m1_rc_shift0 (dyads_m1_rc)				; oligos_6nt_mkv4_m5 versus dyads_m1_rc; m=22/33; ncol2=24; w=-7; offset=-7; strand=R; shift=0; score=0.603566; tGtGTGTGTGTGTGTGTGTGTgt ; cor=; Ncor= a 1002 1034 1501 387 306 291 196 269 114 261 120 236 111 209 270 239 136 254 218 329 304 1781 800 c 1428 923 1040 286 452 110 335 103 242 85 347 63 223 70 1314 112 278 109 422 174 550 394 1153 g 961 6084 540 7832 172 8254 96 8296 47 8335 46 8404 42 8405 134 8271 99 8198 179 7980 362 5772 1069 t 5400 750 5710 286 7861 136 8164 123 8388 110 8278 88 8415 107 7073 169 8278 230 7972 308 7575 844 5769
positions_6nt_m7_rc_shift0 (positions_6nt_m7_rc)				; oligos_6nt_mkv4_m5 versus positions_6nt_m7_rc; m=23/33; ncol2=24; w=-7; offset=-7; strand=R; shift=0; score=0.602135; tGTGTGTGTGTGTGTGTGTGtGt ; cor=; Ncor= a 1062 1139 443 454 215 420 213 1568 170 308 147 305 157 300 422 371 346 376 454 545 1221 1008 1222 c 1569 929 638 266 464 187 432 337 321 122 358 82 271 101 1757 187 466 144 685 240 1326 586 1507 g 1035 7623 359 9528 164 9726 148 8217 116 9958 72 10013 69 9933 237 9672 182 9649 280 9231 861 7767 1373 t 6838 813 9064 256 9661 171 9711 382 9897 116 9927 104 10007 170 8088 274 9510 335 9085 488 7096 1143 6402
positions_6nt_m2_rc_shift6 (positions_6nt_m2_rc)				; oligos_6nt_mkv4_m5 versus positions_6nt_m2_rc; m=24/33; ncol2=24; w=-1; offset=-1; strand=R; shift=6; score=0.601289; ------tgtGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 0 1111 1256 1027 1006 336 335 138 322 130 1646 160 286 107 228 68 251 154 c 0 0 0 0 0 0 1827 1211 1449 814 422 201 272 128 270 304 255 102 181 87 181 80 260 g 0 0 0 0 0 0 1360 6633 1249 7183 313 9532 107 9678 117 7946 85 9760 60 9816 64 9728 189 t 0 0 0 0 0 0 5953 1151 6526 1248 9180 183 9734 123 9734 355 9751 103 9903 120 9938 192 9648
positions_7nt_m7_rc_shift6 (positions_7nt_m7_rc)				; oligos_6nt_mkv4_m5 versus positions_7nt_m7_rc; m=25/33; ncol2=24; w=-1; offset=-1; strand=R; shift=6; score=0.599476; ------tgtGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 0 1231 1313 959 554 331 436 187 401 199 817 182 314 135 304 145 334 203 c 0 0 0 0 0 0 1916 1206 1469 450 568 204 436 152 397 326 293 137 253 101 244 113 357 g 0 0 0 0 0 0 1302 7165 1248 9398 253 9946 141 10080 137 8742 120 10208 66 10219 95 10138 164 t 0 0 0 0 0 0 6347 1112 7120 394 9644 210 10032 163 10063 911 10201 137 10342 172 10312 211 10072
oligos_7nt_mkv5_m9_rc_shift7 (oligos_7nt_mkv5_m9_rc)				; oligos_6nt_mkv4_m5 versus oligos_7nt_mkv5_m9_rc; m=26/33; ncol2=13; w=0; offset=0; strand=R; shift=7; score=0.59826; -------ktTTGTGTsTGtg--- ; cor=; Ncor= a 0 0 0 0 0 0 0 270 323 42 35 26 13 49 15 96 71 140 218 284 0 0 0 c 0 0 0 0 0 0 0 324 334 71 49 57 39 68 34 1213 111 183 389 315 0 0 0 g 0 0 0 0 0 0 0 796 432 298 36 1761 23 1715 44 472 176 1425 301 845 0 0 0 t 0 0 0 0 0 0 0 494 795 1473 1764 40 1809 52 1791 103 1526 136 976 440 0 0 0
positions_7nt_m4_rc_shift6 (positions_7nt_m4_rc)				; oligos_6nt_mkv4_m5 versus positions_7nt_m4_rc; m=27/33; ncol2=24; w=-1; offset=-1; strand=R; shift=6; score=0.598245; ------tgtGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 0 1233 1297 1386 528 408 419 221 364 172 386 170 683 161 267 174 310 209 c 0 0 0 0 0 0 1807 1159 1410 418 542 189 395 129 367 149 384 285 230 110 350 102 362 g 0 0 0 0 0 0 1221 6838 792 8981 245 9472 132 9630 72 9579 113 8427 133 9771 81 9691 123 t 0 0 0 0 0 0 6019 986 6692 353 9085 200 9532 157 9669 166 9613 885 9756 132 9675 177 9586
positions_6nt_m6_rc_shift3 (positions_6nt_m6_rc)				; oligos_6nt_mkv4_m5 versus positions_6nt_m6_rc; m=28/33; ncol2=24; w=-4; offset=-4; strand=R; shift=3; score=0.597911; ---gtGTGTGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 1141 950 717 498 618 395 780 130 292 75 229 101 1501 114 239 123 247 122 347 283 c 0 0 0 1161 1492 605 871 391 690 410 210 131 182 86 192 236 209 102 223 100 302 144 454 g 0 0 0 6364 924 7757 467 8244 354 7685 119 9116 51 9244 98 7597 92 9166 88 9073 157 8796 453 t 0 0 0 997 6297 584 7827 410 8224 788 9204 124 9355 104 9272 329 9248 156 9229 243 9082 376 8473
positions_6nt_m10_rc_shift4 (positions_6nt_m10_rc)				; oligos_6nt_mkv4_m5 versus positions_6nt_m10_rc; m=29/33; ncol2=24; w=-3; offset=-3; strand=R; shift=4; score=0.597469; ----tGTGTGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 785 908 478 506 355 625 113 208 49 168 68 1366 81 175 86 169 68 256 193 c 0 0 0 0 1260 756 755 375 518 335 164 90 130 66 140 186 142 74 169 69 206 99 346 g 0 0 0 0 875 5653 483 6829 333 6383 105 7675 40 7756 67 6248 72 7720 78 7668 106 7423 329 t 0 0 0 0 5158 761 6362 368 6872 735 7696 105 7859 88 7803 278 7783 109 7745 172 7698 300 7210
positions_7nt_m10_rc_shift7 (positions_7nt_m10_rc)				; oligos_6nt_mkv4_m5 versus positions_7nt_m10_rc; m=30/33; ncol2=24; w=0; offset=0; strand=R; shift=7; score=0.596522; -------GtGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 1221 1023 527 405 507 468 450 219 349 128 317 146 1478 154 334 249 c 0 0 0 0 0 0 0 1193 1920 393 861 230 2409 206 485 127 434 115 277 269 305 113 332 g 0 0 0 0 0 0 0 7628 898 9811 279 10121 280 10266 108 10453 63 10565 121 8961 100 10487 139 t 0 0 0 0 0 0 0 1077 7278 388 9574 261 7962 197 10307 190 10494 122 10575 411 10560 185 10399
dyads_m8_rc_shift6 (dyads_m8_rc)				; oligos_6nt_mkv4_m5 versus dyads_m8_rc; m=31/33; ncol2=24; w=-1; offset=-1; strand=R; shift=6; score=0.596216; ------tGyGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 0 988 1049 644 404 281 324 145 289 144 1269 131 238 112 194 102 230 146 c 0 0 0 0 0 0 1578 909 2296 346 518 155 430 135 327 255 292 103 168 59 258 66 279 g 0 0 0 0 0 0 944 5955 537 7677 211 8040 91 8166 96 6905 80 8262 52 8374 44 8298 71 t 0 0 0 0 0 0 5206 803 5239 289 7706 197 8050 126 8149 287 8213 113 8384 89 8312 122 8220
positions_7nt_m6_rc_shift7 (positions_7nt_m6_rc)				; oligos_6nt_mkv4_m5 versus positions_7nt_m6_rc; m=32/33; ncol2=24; w=0; offset=0; strand=R; shift=7; score=0.595916; -------gtGTGTGTGTGTGTGT ; cor=; Ncor= a 0 0 0 0 0 0 0 1314 1108 658 508 613 555 529 276 426 168 364 178 1359 192 368 226 c 0 0 0 0 0 0 0 1321 2020 523 984 308 2529 270 577 151 527 144 329 263 351 141 309 g 0 0 0 0 0 0 0 7534 1002 9649 365 10096 354 10279 137 10526 78 10687 120 9276 117 10610 121 t 0 0 0 0 0 0 0 1149 7188 488 9461 301 7880 240 10328 215 10545 123 10691 420 10658 199 10662
positions_6nt_m3_shift3 (positions_6nt_m3)				; oligos_6nt_mkv4_m5 versus positions_6nt_m3; m=33/33; ncol2=24; w=-4; offset=-4; strand=D; shift=3; score=0.591733; ---gtGtGTGTGTGyGTGTGtkk ; cor=; Ncor= a 0 0 0 706 680 497 902 143 113 101 66 117 72 126 244 108 119 146 143 227 472 711 663 c 0 0 0 591 913 397 618 94 134 36 175 33 117 58 1474 68 153 60 282 133 842 437 698 g 0 0 0 3680 646 4351 350 5253 63 5414 32 5399 30 5324 123 5316 75 5255 126 4915 1228 2606 1991 t 0 0 0 625 3363 357 3732 112 5292 51 5329 53 5383 94 3761 110 5255 141 5051 327 3060 1848 2250

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m10_shift1 (positions_6nt_m10)				; positions_6nt_m10; m=0 (reference); ncol1=24; shift=1; ncol=25; -cacamACACACACACACACACACa ; Alignment reference a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785
positions_6nt_m10_shift1 (positions_6nt_m10)				; positions_6nt_m10 versus positions_6nt_m10; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785
positions_7nt_m9_shift1 (positions_7nt_m9)				; positions_6nt_m10 versus positions_7nt_m9; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984224; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216
positions_7nt_m2_shift1 (positions_7nt_m2)				; positions_6nt_m10 versus positions_7nt_m2; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984009; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894
positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)				; positions_6nt_m10 versus positions_7nt_m3_rc; m=4/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.982075; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888
positions_6nt_m7_shift1 (positions_6nt_m7)				; positions_6nt_m10 versus positions_6nt_m7; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.981924; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062
positions_7nt_m1_shift1 (positions_7nt_m1)				; positions_6nt_m10 versus positions_7nt_m1; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.981816; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835
dyads_m1_shift1 (dyads_m1)				; positions_6nt_m10 versus dyads_m1; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.980697; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002
positions_6nt_m2_shift1 (positions_6nt_m2)				; positions_6nt_m10 versus positions_6nt_m2; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.978814; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111
positions_7nt_m7_shift1 (positions_7nt_m7)				; positions_6nt_m10 versus positions_7nt_m7; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.978567; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231
positions_7nt_m4_shift1 (positions_7nt_m4)				; positions_6nt_m10 versus positions_7nt_m4; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.977977; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233
dyads_m8_shift1 (dyads_m8)				; positions_6nt_m10 versus dyads_m8; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.971999; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988
positions_6nt_m8_shift1 (positions_6nt_m8)				; positions_6nt_m10 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.938883; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0
positions_6nt_m6_shift2 (positions_6nt_m6)				; positions_6nt_m10 versus positions_6nt_m6; m=13/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.918987; --acamACACACACACACACACACa ; cor=; Ncor= a 0 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 c 0 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 g 0 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 t 0 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950
positions_7nt_m10_shift2 (positions_7nt_m10)				; positions_6nt_m10 versus positions_7nt_m10; m=14/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.908654; --acACACACACACACACACACACa ; cor=; Ncor= a 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 c 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 g 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 t 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023
positions_7nt_m6_shift2 (positions_7nt_m6)				; positions_6nt_m10 versus positions_7nt_m6; m=15/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.908471; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 c 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 g 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 t 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108
positions_7nt_m5_shift2 (positions_7nt_m5)				; positions_6nt_m10 versus positions_7nt_m5; m=16/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.907244; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 c 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 g 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 t 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994
positions_7nt_m8_shift0 (positions_7nt_m8)				; positions_6nt_m10 versus positions_7nt_m8; m=17/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.905922; acACACACACACACACACACACac- ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 0 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 0 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 0 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444 0
positions_6nt_m9_shift0 (positions_6nt_m9)				; positions_6nt_m10 versus positions_6nt_m9; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.905504; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0
positions_6nt_m5_rc_shift2 (positions_6nt_m5_rc)				; positions_6nt_m10 versus positions_6nt_m5_rc; m=19/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.903768; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 c 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 g 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 t 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032
positions_6nt_m4_shift2 (positions_6nt_m4)				; positions_6nt_m10 versus positions_6nt_m4; m=20/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.903193; --acrCACACACACACACACACACa ; cor=; Ncor= a 0 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 c 0 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 g 0 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 t 0 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646
positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)				; positions_6nt_m10 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.886195; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0
dyads_m10_shift6 (dyads_m10)				; positions_6nt_m10 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=5; strand=D; shift=6; score=0.736308; ------ACACACACACACACrCAC- ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0
oligos_7nt_mkv5_m8_shift6 (oligos_7nt_mkv5_m8)				; positions_6nt_m10 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=5; strand=D; shift=6; score=0.66245; ------ACACACACACACACAC--- ; cor=; Ncor= a 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 0 c 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 0 g 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 0 t 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0 0
oligos_6nt_mkv4_m2_shift5 (oligos_6nt_mkv4_m2)				; positions_6nt_m10 versus oligos_6nt_mkv4_m2; m=24/33; ncol2=16; w=0; offset=4; strand=D; shift=5; score=0.603636; -----caCwCACAyACACmca---- ; cor=; Ncor= a 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 0 0 0 c 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 0 0 0 g 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 0 0 0 t 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0 0 0 0
oligos_6nt_mkv4_m5_rc_shift6 (oligos_6nt_mkv4_m5_rc)				; positions_6nt_m10 versus oligos_6nt_mkv4_m5_rc; m=25/33; ncol2=16; w=0; offset=5; strand=R; shift=6; score=0.597469; ------acAsACACrCACAsac--- ; cor=; Ncor= a 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 0 c 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 0 g 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 0 t 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0 0
dyads_m7_shift3 (dyads_m7)				; positions_6nt_m10 versus dyads_m7; m=26/33; ncol2=15; w=0; offset=2; strand=D; shift=3; score=0.569813; ---camACACACACrCac------- ; cor=; Ncor= a 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 c 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 g 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 t 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0
positions_6nt_m1_shift10 (positions_6nt_m1)				; positions_6nt_m10 versus positions_6nt_m1; m=27/33; ncol2=15; w=0; offset=9; strand=D; shift=10; score=0.557954; ----------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601
oligos_7nt_mkv5_m4_shift7 (oligos_7nt_mkv5_m4)				; positions_6nt_m10 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=6; strand=D; shift=7; score=0.526214; -------caCACAcACACac----- ; cor=; Ncor= a 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 0 0 0 c 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 0 0 0 g 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 0 0 0 t 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0 0 0 0
dyads_m9_shift3 (dyads_m9)				; positions_6nt_m10 versus dyads_m9; m=29/33; ncol2=14; w=0; offset=2; strand=D; shift=3; score=0.507538; ---caAACACACACmca-------- ; cor=; Ncor= a 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 0 c 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 0 g 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 0 t 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0 0
dyads_m6_shift3 (dyads_m6)				; positions_6nt_m10 versus dyads_m6; m=30/33; ncol2=13; w=0; offset=2; strand=D; shift=3; score=0.503549; ---camACACACAyac--------- ; cor=; Ncor= a 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 0 c 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 0 g 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 0 t 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0 0
dyads_m4_shift3 (dyads_m4)				; positions_6nt_m10 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=2; strand=D; shift=3; score=0.485405; ---camACACACrCaC--------- ; cor=; Ncor= a 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 0 c 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 0 g 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 0 t 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m5_shift11 (oligos_7nt_mkv5_m5)				; positions_6nt_m10 versus oligos_7nt_mkv5_m5; m=32/33; ncol2=14; w=0; offset=10; strand=D; shift=11; score=0.485047; -----------caCACGCACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 c 0 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 g 0 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 t 0 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501
oligos_7nt_mkv5_m9_shift9 (oligos_7nt_mkv5_m9)				; positions_6nt_m10 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=8; strand=D; shift=9; score=0.435597; ---------caCAsACACAAam--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 0 c 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 0 g 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 0 t 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m4_shift10 (dyads_m4)				; dyads_m4; m=0 (reference); ncol1=13; shift=10; ncol=23; ----------camACACACrCaC ; Alignment reference a 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 c 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 g 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 t 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355
dyads_m4_shift10 (dyads_m4)				; dyads_m4 versus dyads_m4; m=1/33; ncol2=13; w=0; offset=0; strand=D; shift=10; score= 1; ----------camACACACrCaC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 c 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 g 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 t 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355
dyads_m6_shift10 (dyads_m6)				; dyads_m4 versus dyads_m6; m=2/33; ncol2=13; w=0; offset=0; strand=D; shift=10; score=0.86598; ----------camACACACAyac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 c 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 g 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 t 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355
oligos_7nt_mkv5_m4_shift10 (oligos_7nt_mkv5_m4)				; dyads_m4 versus oligos_7nt_mkv5_m4; m=3/33; ncol2=13; w=0; offset=0; strand=D; shift=10; score=0.857484; ----------caCACAcACACac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 c 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 g 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 t 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279
dyads_m9_shift10 (dyads_m9)				; dyads_m4 versus dyads_m9; m=4/33; ncol2=14; w=0; offset=0; strand=D; shift=10; score=0.827828; ----------caAACACACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 c 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 g 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 t 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373
dyads_m7_shift8 (dyads_m7)				; dyads_m4 versus dyads_m7; m=5/33; ncol2=15; w=-2; offset=-2; strand=D; shift=8; score=0.793844; --------camACACACACrCac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 c 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 g 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 t 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517
oligos_7nt_mkv5_m5_shift10 (oligos_7nt_mkv5_m5)				; dyads_m4 versus oligos_7nt_mkv5_m5; m=6/33; ncol2=14; w=0; offset=0; strand=D; shift=10; score=0.699014; ----------caCACGCACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 c 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 g 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 t 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418
oligos_7nt_mkv5_m8_shift9 (oligos_7nt_mkv5_m8)				; dyads_m4 versus oligos_7nt_mkv5_m8; m=7/33; ncol2=16; w=-1; offset=-1; strand=D; shift=9; score=0.696853; ---------ACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 c 0 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 g 0 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 t 0 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839
positions_6nt_m1_shift9 (positions_6nt_m1)				; dyads_m4 versus positions_6nt_m1; m=8/33; ncol2=15; w=-1; offset=-1; strand=D; shift=9; score=0.684058; ---------acACACrCACACrc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 c 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 g 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 t 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605
oligos_6nt_mkv4_m5_rc_shift11 (oligos_6nt_mkv4_m5_rc)				; dyads_m4 versus oligos_6nt_mkv4_m5_rc; m=9/33; ncol2=16; w=0; offset=1; strand=R; shift=11; score=0.653662; -----------acAsACACrCAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 c 0 0 0 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 g 0 0 0 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 t 0 0 0 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40
dyads_m10_shift5 (dyads_m10)				; dyads_m4 versus dyads_m10; m=10/33; ncol2=18; w=-5; offset=-5; strand=D; shift=5; score=0.648784; -----ACACACACACACACrCAC ; cor=; Ncor= a 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 c 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 g 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 t 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123
oligos_6nt_mkv4_m2_shift10 (oligos_6nt_mkv4_m2)				; dyads_m4 versus oligos_6nt_mkv4_m2; m=11/33; ncol2=16; w=0; offset=0; strand=D; shift=10; score=0.632586; ----------caCwCACAyACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 c 0 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 g 0 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 t 0 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100
oligos_7nt_mkv5_m9_shift8 (oligos_7nt_mkv5_m9)				; dyads_m4 versus oligos_7nt_mkv5_m9; m=12/33; ncol2=13; w=-2; offset=-2; strand=D; shift=8; score=0.535514; --------caCAsACACAAam-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 c 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 g 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 t 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0
positions_6nt_m8_shift6 (positions_6nt_m8)				; dyads_m4 versus positions_6nt_m8; m=13/33; ncol2=23; w=-4; offset=-4; strand=D; shift=6; score=0.506523; ------caCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 c 0 0 0 0 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 g 0 0 0 0 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 t 0 0 0 0 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484
positions_7nt_m1_shift10 (positions_7nt_m1)				; dyads_m4 versus positions_7nt_m1; m=14/33; ncol2=24; w=0; offset=0; strand=D; shift=10; score=0.498469; ----------cacACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 c 0 0 0 0 0 0 0 0 0 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 g 0 0 0 0 0 0 0 0 0 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 t 0 0 0 0 0 0 0 0 0 0 1042 717 741 296 338 185 227 149 258 277 195 76 212
positions_7nt_m8_shift7 (positions_7nt_m8)				; dyads_m4 versus positions_7nt_m8; m=15/33; ncol2=24; w=-3; offset=-3; strand=D; shift=7; score=0.496196; -------acACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 c 0 0 0 0 0 0 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 g 0 0 0 0 0 0 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 t 0 0 0 0 0 0 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389
positions_6nt_m3_rc_shift7 (positions_6nt_m3_rc)				; dyads_m4 versus positions_6nt_m3_rc; m=16/33; ncol2=24; w=-3; offset=-3; strand=R; shift=7; score=0.494638; -------mmmmmmaCACACrCAC ; cor=; Ncor= a 0 0 0 0 0 0 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 c 0 0 0 0 0 0 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 g 0 0 0 0 0 0 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 t 0 0 0 0 0 0 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117
positions_7nt_m3_rc_shift10 (positions_7nt_m3_rc)				; dyads_m4 versus positions_7nt_m3_rc; m=17/33; ncol2=24; w=0; offset=0; strand=R; shift=10; score=0.492329; ----------cacACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 c 0 0 0 0 0 0 0 0 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 g 0 0 0 0 0 0 0 0 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 t 0 0 0 0 0 0 0 0 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220
dyads_m1_shift10 (dyads_m1)				; dyads_m4 versus dyads_m1; m=18/33; ncol2=24; w=0; offset=0; strand=D; shift=10; score=0.491653; ----------cacACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 c 0 0 0 0 0 0 0 0 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 g 0 0 0 0 0 0 0 0 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 t 0 0 0 0 0 0 0 0 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236
positions_6nt_m9_shift5 (positions_6nt_m9)				; dyads_m4 versus positions_6nt_m9; m=19/33; ncol2=24; w=-5; offset=-5; strand=D; shift=5; score=0.489762; -----acaCacACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 c 0 0 0 0 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 g 0 0 0 0 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 t 0 0 0 0 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204
positions_7nt_m2_shift10 (positions_7nt_m2)				; dyads_m4 versus positions_7nt_m2; m=20/33; ncol2=24; w=0; offset=0; strand=D; shift=10; score=0.489373; ----------cacACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 c 0 0 0 0 0 0 0 0 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 g 0 0 0 0 0 0 0 0 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 t 0 0 0 0 0 0 0 0 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215
positions_7nt_m10_shift1 (positions_7nt_m10)				; dyads_m4 versus positions_7nt_m10; m=21/33; ncol2=24; w=-9; offset=-9; strand=D; shift=1; score=0.487222; -acACACACACACACACACACAC ; cor=; Ncor= a 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 c 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 g 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 t 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527
positions_7nt_m6_shift1 (positions_7nt_m6)				; dyads_m4 versus positions_7nt_m6; m=22/33; ncol2=24; w=-9; offset=-9; strand=D; shift=1; score=0.486965; -acaCACACACACACACACACAC ; cor=; Ncor= a 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 c 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 g 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 t 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658
positions_7nt_m5_shift9 (positions_7nt_m5)				; dyads_m4 versus positions_7nt_m5; m=23/33; ncol2=24; w=-1; offset=-1; strand=D; shift=9; score=0.486415; ---------acaCACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 c 0 0 0 0 0 0 0 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 g 0 0 0 0 0 0 0 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 t 0 0 0 0 0 0 0 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334
positions_6nt_m5_rc_shift3 (positions_6nt_m5_rc)				; dyads_m4 versus positions_6nt_m5_rc; m=24/33; ncol2=24; w=-7; offset=-7; strand=R; shift=3; score=0.486102; ---acaCACACACACACACACAC ; cor=; Ncor= a 0 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 c 0 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 g 0 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 t 0 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483
positions_6nt_m10_shift8 (positions_6nt_m10)				; dyads_m4 versus positions_6nt_m10; m=25/33; ncol2=24; w=-2; offset=-2; strand=D; shift=8; score=0.485405; --------cacamACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 c 0 0 0 0 0 0 0 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 g 0 0 0 0 0 0 0 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 t 0 0 0 0 0 0 0 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168
positions_6nt_m7_shift10 (positions_6nt_m7)				; dyads_m4 versus positions_6nt_m7; m=26/33; ncol2=24; w=0; offset=0; strand=D; shift=10; score=0.485205; ----------caCaCACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 c 0 0 0 0 0 0 0 0 0 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 g 0 0 0 0 0 0 0 0 0 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 t 0 0 0 0 0 0 0 0 0 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305
positions_7nt_m9_shift8 (positions_7nt_m9)				; dyads_m4 versus positions_7nt_m9; m=27/33; ncol2=24; w=-2; offset=-2; strand=D; shift=8; score=0.484641; --------caCACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 c 0 0 0 0 0 0 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 g 0 0 0 0 0 0 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 t 0 0 0 0 0 0 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379
positions_6nt_m6_shift9 (positions_6nt_m6)				; dyads_m4 versus positions_6nt_m6; m=28/33; ncol2=24; w=-1; offset=-1; strand=D; shift=9; score=0.484611; ---------acamACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 c 0 0 0 0 0 0 0 0 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 g 0 0 0 0 0 0 0 0 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 t 0 0 0 0 0 0 0 0 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229
positions_6nt_m2_shift6 (positions_6nt_m2)				; dyads_m4 versus positions_6nt_m2; m=29/33; ncol2=24; w=-4; offset=-4; strand=D; shift=6; score=0.479571; ------caCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 c 0 0 0 0 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 g 0 0 0 0 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 t 0 0 0 0 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322
positions_7nt_m4_shift0 (positions_7nt_m4)				; dyads_m4 versus positions_7nt_m4; m=30/33; ncol2=24; w=-10; offset=-10; strand=D; shift=0; score=0.475945; caCACACACACACACACACACac ; cor=; Ncor= a 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297
positions_7nt_m7_shift6 (positions_7nt_m7)				; dyads_m4 versus positions_7nt_m7; m=31/33; ncol2=24; w=-4; offset=-4; strand=D; shift=6; score=0.472799; ------caCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 c 0 0 0 0 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 g 0 0 0 0 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 t 0 0 0 0 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401
positions_6nt_m4_shift3 (positions_6nt_m4)				; dyads_m4 versus positions_6nt_m4; m=32/33; ncol2=24; w=-7; offset=-7; strand=D; shift=3; score=0.470146; ---acrCACACACACACACACAC ; cor=; Ncor= a 0 0 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 c 0 0 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 g 0 0 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 t 0 0 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196
dyads_m8_shift10 (dyads_m8)				; dyads_m4 versus dyads_m8; m=33/33; ncol2=24; w=0; offset=0; strand=D; shift=10; score=0.468881; ----------CaCACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 c 0 0 0 0 0 0 0 0 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 g 0 0 0 0 0 0 0 0 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 t 0 0 0 0 0 0 0 0 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m6_shift1 (positions_7nt_m6)				; positions_7nt_m6; m=0 (reference); ncol1=24; shift=1; ncol=25; -acaCACACACACACACACACACac ; Alignment reference a 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 c 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 g 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 t 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314
positions_7nt_m6_shift1 (positions_7nt_m6)				; positions_7nt_m6 versus positions_7nt_m6; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 c 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 g 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 t 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314
positions_7nt_m10_shift1 (positions_7nt_m10)				; positions_7nt_m6 versus positions_7nt_m10; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.997722; -acACACACACACACACACACACaC ; cor=; Ncor= a 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 c 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 g 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 t 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221
positions_6nt_m5_rc_shift1 (positions_6nt_m5_rc)				; positions_7nt_m6 versus positions_6nt_m5_rc; m=3/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.99287; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 c 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 g 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 t 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346
positions_7nt_m5_shift1 (positions_7nt_m5)				; positions_7nt_m6 versus positions_7nt_m5; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.992659; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250
positions_6nt_m6_shift1 (positions_6nt_m6)				; positions_7nt_m6 versus positions_6nt_m6; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991185; -acamACACACACACACACACACac ; cor=; Ncor= a 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141
positions_6nt_m4_shift1 (positions_6nt_m4)				; positions_7nt_m6 versus positions_6nt_m4; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989443; -acrCACACACACACACACACACac ; cor=; Ncor= a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762
positions_7nt_m8_shift1 (positions_7nt_m8)				; positions_7nt_m6 versus positions_7nt_m8; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987064; -acACACACACACACACACACACac ; cor=; Ncor= a 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444
positions_6nt_m9_shift1 (positions_6nt_m9)				; positions_7nt_m6 versus positions_6nt_m9; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.976935; -acaCacACACACACACACACACac ; cor=; Ncor= a 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244
positions_6nt_m8_shift2 (positions_6nt_m8)				; positions_7nt_m6 versus positions_6nt_m8; m=9/33; ncol2=23; w=0; offset=1; strand=D; shift=2; score=0.945761; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027
positions_6nt_m3_rc_shift1 (positions_6nt_m3_rc)				; positions_7nt_m6 versus positions_6nt_m3_rc; m=10/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.913476; -mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706
positions_7nt_m7_shift2 (positions_7nt_m7)				; positions_7nt_m6 versus positions_7nt_m7; m=11/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.912285; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313
dyads_m8_shift2 (dyads_m8)				; positions_7nt_m6 versus dyads_m8; m=12/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.911584; --CaCACACACACACACACACACrC ; cor=; Ncor= a 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049
positions_7nt_m4_shift2 (positions_7nt_m4)				; positions_7nt_m6 versus positions_7nt_m4; m=13/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.911044; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297
positions_7nt_m9_shift0 (positions_7nt_m9)				; positions_7nt_m6 versus positions_7nt_m9; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910989; caCACACACACACACACACACACa- ; cor=; Ncor= a 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 0 c 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 0 g 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 0 t 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216 0
positions_6nt_m7_shift0 (positions_6nt_m7)				; positions_7nt_m6 versus positions_6nt_m7; m=15/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.91088; caCaCACACACACACACACACACa- ; cor=; Ncor= a 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 0 c 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 0 g 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 0 t 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062 0
dyads_m1_shift2 (dyads_m1)				; positions_7nt_m6 versus dyads_m1; m=16/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910576; --cacACACACACACACACACACaC ; cor=; Ncor= a 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034
positions_7nt_m1_shift0 (positions_7nt_m1)				; positions_7nt_m6 versus positions_7nt_m1; m=17/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.909154; cacACACACACACACACACACACa- ; cor=; Ncor= a 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 0 c 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 0 g 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 0 t 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835 0
positions_7nt_m2_shift0 (positions_7nt_m2)				; positions_7nt_m6 versus positions_7nt_m2; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908983; cacACACACACACACACACACACa- ; cor=; Ncor= a 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 0 c 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 0 g 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 0 t 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894 0
positions_7nt_m3_rc_shift0 (positions_7nt_m3_rc)				; positions_7nt_m6 versus positions_7nt_m3_rc; m=19/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.908923; cacACACACACACACACACACACa- ; cor=; Ncor= a 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 0 c 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 0 g 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 0 t 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888 0
positions_6nt_m10_shift0 (positions_6nt_m10)				; positions_7nt_m6 versus positions_6nt_m10; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908471; cacamACACACACACACACACACa- ; cor=; Ncor= a 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 0 c 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 0 g 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 0 t 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785 0
positions_6nt_m2_shift2 (positions_6nt_m2)				; positions_7nt_m6 versus positions_6nt_m2; m=21/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.906504; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256
dyads_m10_shift5 (dyads_m10)				; positions_7nt_m6 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=4; strand=D; shift=5; score=0.740579; -----ACACACACACACACrCAC-- ; cor=; Ncor= a 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 0 c 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 0 g 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 0 t 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0 0
oligos_7nt_mkv5_m8_shift5 (oligos_7nt_mkv5_m8)				; positions_7nt_m6 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=4; strand=D; shift=5; score=0.659955; -----ACACACACACACACAC---- ; cor=; Ncor= a 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 0 0 c 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 0 0 g 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 0 0 t 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0 0 0
oligos_6nt_mkv4_m2_shift4 (oligos_6nt_mkv4_m2)				; positions_7nt_m6 versus oligos_6nt_mkv4_m2; m=24/33; ncol2=16; w=0; offset=3; strand=D; shift=4; score=0.600229; ----caCwCACAyACACmca----- ; cor=; Ncor= a 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 0 0 0 0 c 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 0 0 0 0 g 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 0 0 0 0 t 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0 0 0 0 0
oligos_6nt_mkv4_m5_rc_shift9 (oligos_6nt_mkv4_m5_rc)				; positions_7nt_m6 versus oligos_6nt_mkv4_m5_rc; m=25/33; ncol2=16; w=0; offset=8; strand=R; shift=9; score=0.595916; ---------acAsACACrCACAsac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 c 0 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 g 0 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 t 0 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214
positions_6nt_m1_shift7 (positions_6nt_m1)				; positions_7nt_m6 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=6; strand=D; shift=7; score=0.56705; -------acACACrCACACrca--- ; cor=; Ncor= a 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 0 0 c 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 0 0 g 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 0 0 t 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0 0 0
dyads_m7_shift8 (dyads_m7)				; positions_7nt_m6 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=7; strand=D; shift=8; score=0.566228; --------camACACACACrCac-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 c 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 g 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 t 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0
oligos_7nt_mkv5_m4_shift6 (oligos_7nt_mkv5_m4)				; positions_7nt_m6 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=5; strand=D; shift=6; score=0.523899; ------caCACAcACACac------ ; cor=; Ncor= a 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 0 0 0 0 c 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 0 0 0 0 g 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 0 0 0 0 t 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0 0 0 0 0
dyads_m4_shift10 (dyads_m4)				; positions_7nt_m6 versus dyads_m4; m=29/33; ncol2=13; w=0; offset=9; strand=D; shift=10; score=0.486965; ----------camACACACrCaC-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 c 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 g 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 t 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0
dyads_m9_shift2 (dyads_m9)				; positions_7nt_m6 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=1; strand=D; shift=2; score=0.486855; --caAACACACACmca--------- ; cor=; Ncor= a 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 0 0 c 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 0 0 g 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 0 0 t 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m5_shift8 (oligos_7nt_mkv5_m5)				; positions_7nt_m6 versus oligos_7nt_mkv5_m5; m=31/33; ncol2=14; w=0; offset=7; strand=D; shift=8; score=0.484316; --------caCACGCACACmca--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 c 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 g 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 t 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0
dyads_m6_shift2 (dyads_m6)				; positions_7nt_m6 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.482192; --camACACACAyac---------- ; cor=; Ncor= a 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 0 0 c 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 0 0 g 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 0 0 t 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m9_shift2 (oligos_7nt_mkv5_m9)				; positions_7nt_m6 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.423777; --caCAsACACAAam---------- ; cor=; Ncor= a 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 0 0 0 0 0 0 0 0 c 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 0 0 0 0 0 0 0 0 g 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 0 0 0 0 0 0 0 0 t 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0 0 0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m9_shift0 (positions_6nt_m9)				; positions_6nt_m9; m=0 (reference); ncol1=24; shift=0; ncol=24; acaCacACACACACACACACACac ; Alignment reference a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244
positions_6nt_m9_shift0 (positions_6nt_m9)				; positions_6nt_m9 versus positions_6nt_m9; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=0; score= 1; acaCacACACACACACACACACac ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244
positions_7nt_m8_shift0 (positions_7nt_m8)				; positions_6nt_m9 versus positions_7nt_m8; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=0; score=0.987893; acACACACACACACACACACACac ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444
positions_7nt_m10_shift0 (positions_7nt_m10)				; positions_6nt_m9 versus positions_7nt_m10; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=0; score=0.981208; acACACACACACACACACACACaC ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221
positions_7nt_m5_shift0 (positions_7nt_m5)				; positions_6nt_m9 versus positions_7nt_m5; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=0; score=0.979142; acaCACACACACACACACACACac ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250
positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)				; positions_6nt_m9 versus positions_6nt_m5_rc; m=5/33; ncol2=24; w=0; offset=0; strand=R; shift=0; score=0.978278; acaCACACACACACACACACACac ; cor=; Ncor= a 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 c 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 g 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 t 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346
positions_6nt_m6_shift0 (positions_6nt_m6)				; positions_6nt_m9 versus positions_6nt_m6; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=0; score=0.977112; acamACACACACACACACACACac ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141
positions_7nt_m6_shift0 (positions_7nt_m6)				; positions_6nt_m9 versus positions_7nt_m6; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=0; score=0.976935; acaCACACACACACACACACACac ; cor=; Ncor= a 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 c 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 g 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 t 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314
positions_6nt_m4_shift0 (positions_6nt_m4)				; positions_6nt_m9 versus positions_6nt_m4; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=0; score=0.974739; acrCACACACACACACACACACac ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762
positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)				; positions_6nt_m9 versus positions_6nt_m3_rc; m=9/33; ncol2=24; w=0; offset=0; strand=R; shift=0; score=0.959767; mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706
positions_6nt_m8_shift1 (positions_6nt_m8)				; positions_6nt_m9 versus positions_6nt_m8; m=10/33; ncol2=23; w=0; offset=1; strand=D; shift=1; score=0.954408; -caCACACACACACACACACACac ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027
positions_7nt_m4_shift1 (positions_7nt_m4)				; positions_6nt_m9 versus positions_7nt_m4; m=11/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.906407; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297
positions_6nt_m10_shift1 (positions_6nt_m10)				; positions_6nt_m9 versus positions_6nt_m10; m=12/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.905504; -cacamACACACACACACACACAC ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908
positions_6nt_m2_shift1 (positions_6nt_m2)				; positions_6nt_m9 versus positions_6nt_m2; m=13/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.904567; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256
dyads_m1_shift1 (dyads_m1)				; positions_6nt_m9 versus dyads_m1; m=14/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.904482; -cacACACACACACACACACACaC ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034
dyads_m8_shift1 (dyads_m8)				; positions_6nt_m9 versus dyads_m8; m=15/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.903809; -CaCACACACACACACACACACrC ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049
positions_7nt_m7_shift1 (positions_7nt_m7)				; positions_6nt_m9 versus positions_7nt_m7; m=16/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.903631; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313
positions_7nt_m9_shift1 (positions_7nt_m9)				; positions_6nt_m9 versus positions_7nt_m9; m=17/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.903082; -caCACACACACACACACACACAC ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316
positions_6nt_m7_shift1 (positions_6nt_m7)				; positions_6nt_m9 versus positions_6nt_m7; m=18/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.901559; -caCaCACACACACACACACACAC ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139
positions_7nt_m1_shift1 (positions_7nt_m1)				; positions_6nt_m9 versus positions_7nt_m1; m=19/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.899516; -cacACACACACACACACACACAC ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882
positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)				; positions_6nt_m9 versus positions_7nt_m3_rc; m=20/33; ncol2=24; w=0; offset=1; strand=R; shift=1; score=0.899242; -cacACACACACACACACACACAC ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963
positions_7nt_m2_shift1 (positions_7nt_m2)				; positions_6nt_m9 versus positions_7nt_m2; m=21/33; ncol2=24; w=0; offset=1; strand=D; shift=1; score=0.89924; -cacACACACACACACACACACAC ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970
dyads_m10_shift6 (dyads_m10)				; positions_6nt_m9 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=6; strand=D; shift=6; score=0.738978; ------ACACACACACACACrCAC ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123
oligos_7nt_mkv5_m8_shift6 (oligos_7nt_mkv5_m8)				; positions_6nt_m9 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=6; strand=D; shift=6; score=0.657234; ------ACACACACACACACAC-- ; cor=; Ncor= a 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 c 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 g 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 t 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0
oligos_6nt_mkv4_m5_rc_shift6 (oligos_6nt_mkv4_m5_rc)				; positions_6nt_m9 versus oligos_6nt_mkv4_m5_rc; m=24/33; ncol2=16; w=0; offset=6; strand=R; shift=6; score=0.61447; ------acAsACACrCACAsac-- ; cor=; Ncor= a 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 c 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 g 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 t 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0
oligos_6nt_mkv4_m2_shift7 (oligos_6nt_mkv4_m2)				; positions_6nt_m9 versus oligos_6nt_mkv4_m2; m=25/33; ncol2=16; w=0; offset=7; strand=D; shift=7; score=0.592896; -------caCwCACAyACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 c 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 g 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 t 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0
positions_6nt_m1_shift8 (positions_6nt_m1)				; positions_6nt_m9 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=8; strand=D; shift=8; score=0.584313; --------acACACrCACACrca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 c 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 g 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 t 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0
dyads_m7_shift3 (dyads_m7)				; positions_6nt_m9 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=3; strand=D; shift=3; score=0.580494; ---camACACACACrCac------ ; cor=; Ncor= a 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 c 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 g 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 t 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0
oligos_7nt_mkv5_m4_shift9 (oligos_7nt_mkv5_m4)				; positions_6nt_m9 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=9; strand=D; shift=9; score=0.521506; ---------caCACAcACACac-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 c 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 g 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 t 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0
oligos_7nt_mkv5_m5_shift9 (oligos_7nt_mkv5_m5)				; positions_6nt_m9 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=9; strand=D; shift=9; score=0.517106; ---------caCACGCACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 c 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 g 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 t 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0
dyads_m9_shift3 (dyads_m9)				; positions_6nt_m9 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=3; strand=D; shift=3; score=0.505689; ---caAACACACACmca------- ; cor=; Ncor= a 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 c 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 g 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 t 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0
dyads_m4_shift5 (dyads_m4)				; positions_6nt_m9 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=5; strand=D; shift=5; score=0.489762; -----camACACACrCaC------ ; cor=; Ncor= a 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 c 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 g 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 t 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0
dyads_m6_shift3 (dyads_m6)				; positions_6nt_m9 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=3; strand=D; shift=3; score=0.483325; ---camACACACAyac-------- ; cor=; Ncor= a 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 c 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 g 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 t 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)				; positions_6nt_m9 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=11; strand=D; shift=11; score=0.418999; -----------caCAsACACAAam ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m4_shift1 (positions_7nt_m4)				; positions_7nt_m4; m=0 (reference); ncol1=24; shift=1; ncol=25; -caCACACACACACACACACACaca ; Alignment reference a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233
positions_7nt_m4_shift1 (positions_7nt_m4)				; positions_7nt_m4 versus positions_7nt_m4; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233
dyads_m8_shift1 (dyads_m8)				; positions_7nt_m4 versus dyads_m8; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.996557; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988
positions_7nt_m7_shift1 (positions_7nt_m7)				; positions_7nt_m4 versus positions_7nt_m7; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.993574; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231
dyads_m1_shift1 (dyads_m1)				; positions_7nt_m4 versus dyads_m1; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.992017; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002
positions_6nt_m2_shift1 (positions_6nt_m2)				; positions_7nt_m4 versus positions_6nt_m2; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989888; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111
positions_7nt_m9_shift1 (positions_7nt_m9)				; positions_7nt_m4 versus positions_7nt_m9; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.989389; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216
positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)				; positions_7nt_m4 versus positions_7nt_m3_rc; m=7/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.988097; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888
positions_7nt_m2_shift1 (positions_7nt_m2)				; positions_7nt_m4 versus positions_7nt_m2; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987376; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894
positions_6nt_m7_shift1 (positions_6nt_m7)				; positions_7nt_m4 versus positions_6nt_m7; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987375; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062
positions_7nt_m1_shift1 (positions_7nt_m1)				; positions_7nt_m4 versus positions_7nt_m1; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987347; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835
positions_6nt_m10_shift1 (positions_6nt_m10)				; positions_7nt_m4 versus positions_6nt_m10; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.977977; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785
positions_6nt_m8_shift1 (positions_6nt_m8)				; positions_7nt_m4 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.950584; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0
positions_7nt_m5_shift0 (positions_7nt_m5)				; positions_7nt_m4 versus positions_7nt_m5; m=13/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.913133; acaCACACACACACACACACACac- ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 0 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 0 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 0 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250 0
positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)				; positions_7nt_m4 versus positions_6nt_m5_rc; m=14/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.912568; acaCACACACACACACACACACac- ; cor=; Ncor= a 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 0 c 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 0 g 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 0 t 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346 0
positions_7nt_m6_shift0 (positions_7nt_m6)				; positions_7nt_m4 versus positions_7nt_m6; m=15/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.911044; acaCACACACACACACACACACac- ; cor=; Ncor= a 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 0 c 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 0 g 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 0 t 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314 0
positions_6nt_m4_shift0 (positions_6nt_m4)				; positions_7nt_m4 versus positions_6nt_m4; m=16/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910866; acrCACACACACACACACACACac- ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 0 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 0 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 0 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762 0
positions_7nt_m10_shift0 (positions_7nt_m10)				; positions_7nt_m4 versus positions_7nt_m10; m=17/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910278; acACACACACACACACACACACaC- ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 0 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 0 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 0 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221 0
positions_7nt_m8_shift0 (positions_7nt_m8)				; positions_7nt_m4 versus positions_7nt_m8; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.909686; acACACACACACACACACACACac- ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 0 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 0 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 0 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444 0
positions_6nt_m6_shift0 (positions_6nt_m6)				; positions_7nt_m4 versus positions_6nt_m6; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.906854; acamACACACACACACACACACac- ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 0 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 0 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 0 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141 0
positions_6nt_m9_shift0 (positions_6nt_m9)				; positions_7nt_m4 versus positions_6nt_m9; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.906407; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0
positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)				; positions_7nt_m4 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.858196; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0
dyads_m10_shift6 (dyads_m10)				; positions_7nt_m4 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=5; strand=D; shift=6; score=0.739009; ------ACACACACACACACrCAC- ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0
oligos_7nt_mkv5_m8_shift6 (oligos_7nt_mkv5_m8)				; positions_7nt_m4 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=5; strand=D; shift=6; score=0.659132; ------ACACACACACACACAC--- ; cor=; Ncor= a 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 0 c 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 0 g 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 0 t 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0 0
oligos_6nt_mkv4_m5_rc_shift8 (oligos_6nt_mkv4_m5_rc)				; positions_7nt_m4 versus oligos_6nt_mkv4_m5_rc; m=24/33; ncol2=16; w=0; offset=7; strand=R; shift=8; score=0.598245; --------acAsACACrCACAsac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 c 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 g 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 t 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0
oligos_6nt_mkv4_m2_shift5 (oligos_6nt_mkv4_m2)				; positions_7nt_m4 versus oligos_6nt_mkv4_m2; m=25/33; ncol2=16; w=0; offset=4; strand=D; shift=5; score=0.595027; -----caCwCACAyACACmca---- ; cor=; Ncor= a 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 0 0 0 c 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 0 0 0 g 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 0 0 0 t 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0 0 0 0
positions_6nt_m1_shift10 (positions_6nt_m1)				; positions_7nt_m4 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=9; strand=D; shift=10; score=0.571436; ----------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601
dyads_m7_shift9 (dyads_m7)				; positions_7nt_m4 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=8; strand=D; shift=9; score=0.555879; ---------camACACACACrCac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 c 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 g 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 t 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0
oligos_7nt_mkv5_m4_shift7 (oligos_7nt_mkv5_m4)				; positions_7nt_m4 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=6; strand=D; shift=7; score=0.523928; -------caCACAcACACac----- ; cor=; Ncor= a 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 0 0 0 c 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 0 0 0 g 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 0 0 0 t 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0 0 0 0
oligos_7nt_mkv5_m5_shift1 (oligos_7nt_mkv5_m5)				; positions_7nt_m4 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.503422; -caCACGCACACmca---------- ; cor=; Ncor= a 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 0 0 0 0 0 0 0 c 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 0 0 0 0 0 0 0 g 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 0 0 0 0 0 0 0 t 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0 0 0 0 0 0 0 0
dyads_m9_shift11 (dyads_m9)				; positions_7nt_m4 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=10; strand=D; shift=11; score=0.502794; -----------caAACACACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 c 0 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 g 0 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 t 0 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431
dyads_m6_shift11 (dyads_m6)				; positions_7nt_m4 versus dyads_m6; m=31/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.47715; -----------camACACACAyac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 c 0 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 g 0 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 t 0 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0
dyads_m4_shift11 (dyads_m4)				; positions_7nt_m4 versus dyads_m4; m=32/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.475945; -----------camACACACrCaC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 c 0 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 g 0 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 t 0 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0
oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)				; positions_7nt_m4 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.422951; -----------caCAsACACAAam- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m8_shift1 (positions_6nt_m8)				; positions_6nt_m8; m=0 (reference); ncol1=23; shift=1; ncol=24; -caCACACACACACACACACACac ; Alignment reference a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027
positions_6nt_m8_shift1 (positions_6nt_m8)				; positions_6nt_m8 versus positions_6nt_m8; m=1/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score= 1; -caCACACACACACACACACACac ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027
positions_6nt_m9_shift0 (positions_6nt_m9)				; positions_6nt_m8 versus positions_6nt_m9; m=2/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.954408; acaCacACACACACACACACACac ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244
positions_7nt_m4_shift1 (positions_7nt_m4)				; positions_6nt_m8 versus positions_7nt_m4; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.950584; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297
dyads_m8_shift1 (dyads_m8)				; positions_6nt_m8 versus dyads_m8; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.948915; -CaCACACACACACACACACACrC ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049
dyads_m1_shift1 (dyads_m1)				; positions_6nt_m8 versus dyads_m1; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.948907; -cacACACACACACACACACACaC ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034
positions_7nt_m8_shift0 (positions_7nt_m8)				; positions_6nt_m8 versus positions_7nt_m8; m=6/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.948782; acACACACACACACACACACACac ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444
positions_7nt_m7_shift1 (positions_7nt_m7)				; positions_6nt_m8 versus positions_7nt_m7; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.947773; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313
positions_6nt_m2_shift1 (positions_6nt_m2)				; positions_6nt_m8 versus positions_6nt_m2; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.946964; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256
positions_7nt_m10_shift0 (positions_7nt_m10)				; positions_6nt_m8 versus positions_7nt_m10; m=9/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.946684; acACACACACACACACACACACaC ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221
positions_7nt_m5_shift0 (positions_7nt_m5)				; positions_6nt_m8 versus positions_7nt_m5; m=10/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.946429; acaCACACACACACACACACACac ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250
positions_7nt_m9_shift1 (positions_7nt_m9)				; positions_6nt_m8 versus positions_7nt_m9; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.946372; -caCACACACACACACACACACAC ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316
positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)				; positions_6nt_m8 versus positions_6nt_m5_rc; m=12/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.946007; acaCACACACACACACACACACac ; cor=; Ncor= a 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 c 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 g 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 t 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346
positions_7nt_m6_shift0 (positions_7nt_m6)				; positions_6nt_m8 versus positions_7nt_m6; m=13/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.945761; acaCACACACACACACACACACac ; cor=; Ncor= a 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 c 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 g 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 t 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314
positions_6nt_m6_shift0 (positions_6nt_m6)				; positions_6nt_m8 versus positions_6nt_m6; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.944443; acamACACACACACACACACACac ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141
positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)				; positions_6nt_m8 versus positions_7nt_m3_rc; m=15/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.944211; -cacACACACACACACACACACAC ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963
positions_6nt_m4_shift0 (positions_6nt_m4)				; positions_6nt_m8 versus positions_6nt_m4; m=16/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.943956; acrCACACACACACACACACACac ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762
positions_7nt_m2_shift1 (positions_7nt_m2)				; positions_6nt_m8 versus positions_7nt_m2; m=17/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.943755; -cacACACACACACACACACACAC ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970
positions_6nt_m7_shift1 (positions_6nt_m7)				; positions_6nt_m8 versus positions_6nt_m7; m=18/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.943095; -caCaCACACACACACACACACAC ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139
positions_7nt_m1_shift1 (positions_7nt_m1)				; positions_6nt_m8 versus positions_7nt_m1; m=19/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.942915; -cacACACACACACACACACACAC ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882
positions_6nt_m10_shift1 (positions_6nt_m10)				; positions_6nt_m8 versus positions_6nt_m10; m=20/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.938883; -cacamACACACACACACACACAC ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908
positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)				; positions_6nt_m8 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.908608; mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706
dyads_m10_shift6 (dyads_m10)				; positions_6nt_m8 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=5; strand=D; shift=6; score=0.770595; ------ACACACACACACACrCAC ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123
oligos_7nt_mkv5_m8_shift6 (oligos_7nt_mkv5_m8)				; positions_6nt_m8 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=5; strand=D; shift=6; score=0.686766; ------ACACACACACACACAC-- ; cor=; Ncor= a 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 c 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 g 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 t 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0
oligos_6nt_mkv4_m5_rc_shift6 (oligos_6nt_mkv4_m5_rc)				; positions_6nt_m8 versus oligos_6nt_mkv4_m5_rc; m=24/33; ncol2=16; w=0; offset=5; strand=R; shift=6; score=0.639281; ------acAsACACrCACAsac-- ; cor=; Ncor= a 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 c 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 g 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 t 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0
oligos_6nt_mkv4_m2_shift7 (oligos_6nt_mkv4_m2)				; positions_6nt_m8 versus oligos_6nt_mkv4_m2; m=25/33; ncol2=16; w=0; offset=6; strand=D; shift=7; score=0.619664; -------caCwCACAyACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 c 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 g 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 t 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0
positions_6nt_m1_shift8 (positions_6nt_m1)				; positions_6nt_m8 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=7; strand=D; shift=8; score=0.609057; --------acACACrCACACrca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 c 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 g 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 t 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0
dyads_m7_shift3 (dyads_m7)				; positions_6nt_m8 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=2; strand=D; shift=3; score=0.597214; ---camACACACACrCac------ ; cor=; Ncor= a 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 c 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 g 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 t 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0
oligos_7nt_mkv5_m4_shift3 (oligos_7nt_mkv5_m4)				; positions_6nt_m8 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=2; strand=D; shift=3; score=0.544673; ---caCACAcACACac-------- ; cor=; Ncor= a 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 0 0 0 0 0 0 c 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 0 0 0 0 0 0 g 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 0 0 0 0 0 0 t 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m5_shift9 (oligos_7nt_mkv5_m5)				; positions_6nt_m8 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=8; strand=D; shift=9; score=0.537212; ---------caCACGCACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 c 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 g 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 t 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0
dyads_m9_shift3 (dyads_m9)				; positions_6nt_m8 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=2; strand=D; shift=3; score= 0.5152; ---caAACACACACmca------- ; cor=; Ncor= a 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 c 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 g 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 t 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0
dyads_m4_shift5 (dyads_m4)				; positions_6nt_m8 versus dyads_m4; m=31/33; ncol2=13; w=0; offset=4; strand=D; shift=5; score=0.506523; -----camACACACrCaC------ ; cor=; Ncor= a 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 c 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 g 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 t 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0
dyads_m6_shift3 (dyads_m6)				; positions_6nt_m8 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=2; strand=D; shift=3; score=0.496034; ---camACACACAyac-------- ; cor=; Ncor= a 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 0 c 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 0 g 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 0 t 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)				; positions_6nt_m8 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.435863; -----------caCAsACACAAam ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m4_shift11 (oligos_7nt_mkv5_m4)				; oligos_7nt_mkv5_m4; m=0 (reference); ncol1=13; shift=11; ncol=24; -----------caCACAcACACac ; Alignment reference a 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 c 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 g 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 t 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279
oligos_7nt_mkv5_m4_shift11 (oligos_7nt_mkv5_m4)				; oligos_7nt_mkv5_m4 versus oligos_7nt_mkv5_m4; m=1/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score= 1; -----------caCACAcACACac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 c 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 g 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 t 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279
dyads_m6_shift11 (dyads_m6)				; oligos_7nt_mkv5_m4 versus dyads_m6; m=2/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score=0.858881; -----------camACACACAyac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 c 0 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 g 0 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 t 0 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355
dyads_m4_shift11 (dyads_m4)				; oligos_7nt_mkv5_m4 versus dyads_m4; m=3/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score=0.857484; -----------camACACACrCaC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 c 0 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 g 0 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 t 0 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355
oligos_7nt_mkv5_m5_shift11 (oligos_7nt_mkv5_m5)				; oligos_7nt_mkv5_m4 versus oligos_7nt_mkv5_m5; m=4/33; ncol2=14; w=0; offset=0; strand=D; shift=11; score=0.799822; -----------caCACGCACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 c 0 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 g 0 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 t 0 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418
dyads_m9_shift11 (dyads_m9)				; oligos_7nt_mkv5_m4 versus dyads_m9; m=5/33; ncol2=14; w=0; offset=0; strand=D; shift=11; score=0.798816; -----------caAACACACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 c 0 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 g 0 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 t 0 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373
oligos_7nt_mkv5_m8_shift10 (oligos_7nt_mkv5_m8)				; oligos_7nt_mkv5_m4 versus oligos_7nt_mkv5_m8; m=6/33; ncol2=16; w=-1; offset=-1; strand=D; shift=10; score=0.793847; ----------ACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 c 0 0 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 g 0 0 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 t 0 0 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839
positions_6nt_m1_shift10 (positions_6nt_m1)				; oligos_7nt_mkv5_m4 versus positions_6nt_m1; m=7/33; ncol2=15; w=-1; offset=-1; strand=D; shift=10; score=0.781268; ----------acACACrCACACrc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 c 0 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 g 0 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 t 0 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605
dyads_m7_shift9 (dyads_m7)				; oligos_7nt_mkv5_m4 versus dyads_m7; m=8/33; ncol2=15; w=-2; offset=-2; strand=D; shift=9; score=0.780174; ---------camACACACACrCac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 c 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 g 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 t 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517
oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)				; oligos_7nt_mkv5_m4 versus oligos_7nt_mkv5_m9; m=9/33; ncol2=13; w=0; offset=0; strand=D; shift=11; score=0.779584; -----------caCAsACACAAam ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270
oligos_6nt_mkv4_m2_shift9 (oligos_6nt_mkv4_m2)				; oligos_7nt_mkv5_m4 versus oligos_6nt_mkv4_m2; m=10/33; ncol2=16; w=-2; offset=-2; strand=D; shift=9; score=0.758749; ---------caCwCACAyACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 c 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 g 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 t 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362
oligos_6nt_mkv4_m5_rc_shift10 (oligos_6nt_mkv4_m5_rc)				; oligos_7nt_mkv5_m4 versus oligos_6nt_mkv4_m5_rc; m=11/33; ncol2=16; w=-1; offset=-1; strand=R; shift=10; score=0.711097; ----------acAsACACrCACAs ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 c 0 0 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 g 0 0 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 t 0 0 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62
dyads_m10_shift8 (dyads_m10)				; oligos_7nt_mkv5_m4 versus dyads_m10; m=12/33; ncol2=18; w=-3; offset=-3; strand=D; shift=8; score=0.701278; --------ACACACACACACACrC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 c 0 0 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 g 0 0 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 t 0 0 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380
positions_6nt_m8_shift9 (positions_6nt_m8)				; oligos_7nt_mkv5_m4 versus positions_6nt_m8; m=13/33; ncol2=23; w=-2; offset=-2; strand=D; shift=9; score=0.544673; ---------caCACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 c 0 0 0 0 0 0 0 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 g 0 0 0 0 0 0 0 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 t 0 0 0 0 0 0 0 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524
positions_6nt_m4_shift2 (positions_6nt_m4)				; oligos_7nt_mkv5_m4 versus positions_6nt_m4; m=14/33; ncol2=24; w=-9; offset=-9; strand=D; shift=2; score=0.52993; --acrCACACACACACACACACAC ; cor=; Ncor= a 0 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 c 0 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 g 0 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 t 0 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603
positions_6nt_m6_shift0 (positions_6nt_m6)				; oligos_7nt_mkv5_m4 versus positions_6nt_m6; m=15/33; ncol2=24; w=-11; offset=-11; strand=D; shift=0; score=0.526805; acamACACACACACACACACACac ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141
positions_6nt_m10_shift5 (positions_6nt_m10)				; oligos_7nt_mkv5_m4 versus positions_6nt_m10; m=16/33; ncol2=24; w=-6; offset=-6; strand=D; shift=5; score=0.526214; -----cacamACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 c 0 0 0 0 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 g 0 0 0 0 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 t 0 0 0 0 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625
positions_7nt_m1_shift1 (positions_7nt_m1)				; oligos_7nt_mkv5_m4 versus positions_7nt_m1; m=17/33; ncol2=24; w=-10; offset=-10; strand=D; shift=1; score=0.526163; -cacACACACACACACACACACAC ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882
positions_6nt_m2_shift3 (positions_6nt_m2)				; oligos_7nt_mkv5_m4 versus positions_6nt_m2; m=18/33; ncol2=24; w=-8; offset=-8; strand=D; shift=3; score=0.526094; ---caCACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 c 0 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 g 0 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 t 0 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006
positions_6nt_m7_shift1 (positions_6nt_m7)				; oligos_7nt_mkv5_m4 versus positions_6nt_m7; m=19/33; ncol2=24; w=-10; offset=-10; strand=D; shift=1; score=0.525607; -caCaCACACACACACACACACAC ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139
positions_7nt_m5_shift0 (positions_7nt_m5)				; oligos_7nt_mkv5_m4 versus positions_7nt_m5; m=20/33; ncol2=24; w=-11; offset=-11; strand=D; shift=0; score=0.525534; acaCACACACACACACACACACac ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250
positions_7nt_m7_shift11 (positions_7nt_m7)				; oligos_7nt_mkv5_m4 versus positions_7nt_m7; m=21/33; ncol2=24; w=0; offset=0; strand=D; shift=11; score=0.524788; -----------caCACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 c 0 0 0 0 0 0 0 0 0 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 g 0 0 0 0 0 0 0 0 0 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 t 0 0 0 0 0 0 0 0 0 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314
positions_6nt_m5_rc_shift8 (positions_6nt_m5_rc)				; oligos_7nt_mkv5_m4 versus positions_6nt_m5_rc; m=22/33; ncol2=24; w=-3; offset=-3; strand=R; shift=8; score=0.524704; --------acaCACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 c 0 0 0 0 0 0 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 g 0 0 0 0 0 0 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 t 0 0 0 0 0 0 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451
dyads_m1_shift3 (dyads_m1)				; oligos_7nt_mkv5_m4 versus dyads_m1; m=23/33; ncol2=24; w=-8; offset=-8; strand=D; shift=3; score=0.52454; ---cacACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 c 0 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 g 0 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 t 0 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387
positions_7nt_m10_shift6 (positions_7nt_m10)				; oligos_7nt_mkv5_m4 versus positions_7nt_m10; m=24/33; ncol2=24; w=-5; offset=-5; strand=D; shift=6; score=0.524231; ------acACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 c 0 0 0 0 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 g 0 0 0 0 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 t 0 0 0 0 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450
positions_7nt_m4_shift5 (positions_7nt_m4)				; oligos_7nt_mkv5_m4 versus positions_7nt_m4; m=25/33; ncol2=24; w=-6; offset=-6; strand=D; shift=5; score=0.523928; -----caCACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 c 0 0 0 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 g 0 0 0 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 t 0 0 0 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419
positions_7nt_m6_shift6 (positions_7nt_m6)				; oligos_7nt_mkv5_m4 versus positions_7nt_m6; m=26/33; ncol2=24; w=-5; offset=-5; strand=D; shift=6; score=0.523899; ------acaCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 c 0 0 0 0 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 g 0 0 0 0 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 t 0 0 0 0 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529
dyads_m8_shift3 (dyads_m8)				; oligos_7nt_mkv5_m4 versus dyads_m8; m=27/33; ncol2=24; w=-8; offset=-8; strand=D; shift=3; score=0.523645; ---CaCACACACACACACACACAC ; cor=; Ncor= a 0 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 c 0 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 g 0 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 t 0 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404
positions_7nt_m8_shift0 (positions_7nt_m8)				; oligos_7nt_mkv5_m4 versus positions_7nt_m8; m=28/33; ncol2=24; w=-11; offset=-11; strand=D; shift=0; score=0.522508; acACACACACACACACACACACac ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444
positions_7nt_m9_shift1 (positions_7nt_m9)				; oligos_7nt_mkv5_m4 versus positions_7nt_m9; m=29/33; ncol2=24; w=-10; offset=-10; strand=D; shift=1; score=0.522281; -caCACACACACACACACACACAC ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316
positions_7nt_m2_shift1 (positions_7nt_m2)				; oligos_7nt_mkv5_m4 versus positions_7nt_m2; m=30/33; ncol2=24; w=-10; offset=-10; strand=D; shift=1; score=0.522033; -cacACACACACACACACACACAC ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970
positions_6nt_m9_shift2 (positions_6nt_m9)				; oligos_7nt_mkv5_m4 versus positions_6nt_m9; m=31/33; ncol2=24; w=-9; offset=-9; strand=D; shift=2; score=0.521506; --acaCacACACACACACACACAC ; cor=; Ncor= a 0 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 c 0 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 g 0 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 t 0 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820
positions_7nt_m3_rc_shift9 (positions_7nt_m3_rc)				; oligos_7nt_mkv5_m4 versus positions_7nt_m3_rc; m=32/33; ncol2=24; w=-2; offset=-2; strand=R; shift=9; score=0.521049; ---------cacACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 c 0 0 0 0 0 0 0 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 g 0 0 0 0 0 0 0 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 t 0 0 0 0 0 0 0 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244
positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)				; oligos_7nt_mkv5_m4 versus positions_6nt_m3_rc; m=33/33; ncol2=24; w=-11; offset=-11; strand=R; shift=0; score=0.519472; mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_6nt_m7_shift1 (positions_6nt_m7)				; positions_6nt_m7; m=0 (reference); ncol1=24; shift=1; ncol=25; -caCaCACACACACACACACACACa ; Alignment reference a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062
positions_6nt_m7_shift1 (positions_6nt_m7)				; positions_6nt_m7 versus positions_6nt_m7; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062
positions_7nt_m1_shift1 (positions_7nt_m1)				; positions_6nt_m7 versus positions_7nt_m1; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.996777; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835
positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)				; positions_6nt_m7 versus positions_7nt_m3_rc; m=3/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score= 0.9925; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888
dyads_m1_shift1 (dyads_m1)				; positions_6nt_m7 versus dyads_m1; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.992266; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002
positions_7nt_m9_shift1 (positions_7nt_m9)				; positions_6nt_m7 versus positions_7nt_m9; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991115; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216
positions_7nt_m7_shift1 (positions_7nt_m7)				; positions_6nt_m7 versus positions_7nt_m7; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.988506; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231
positions_7nt_m2_shift1 (positions_7nt_m2)				; positions_6nt_m7 versus positions_7nt_m2; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.988242; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894
positions_7nt_m4_shift1 (positions_7nt_m4)				; positions_6nt_m7 versus positions_7nt_m4; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987375; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233
dyads_m8_shift1 (dyads_m8)				; positions_6nt_m7 versus dyads_m8; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984395; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988
positions_6nt_m2_shift1 (positions_6nt_m2)				; positions_6nt_m7 versus positions_6nt_m2; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.983399; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111
positions_6nt_m10_shift1 (positions_6nt_m10)				; positions_6nt_m7 versus positions_6nt_m10; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.981924; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785
positions_6nt_m8_shift1 (positions_6nt_m8)				; positions_6nt_m7 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.943095; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0
positions_7nt_m5_shift0 (positions_7nt_m5)				; positions_6nt_m7 versus positions_7nt_m5; m=13/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.914459; acaCACACACACACACACACACac- ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 0 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 0 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 0 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250 0
positions_6nt_m4_shift2 (positions_6nt_m4)				; positions_6nt_m7 versus positions_6nt_m4; m=14/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.914283; --acrCACACACACACACACACACa ; cor=; Ncor= a 0 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 c 0 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 g 0 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 t 0 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646
positions_6nt_m5_rc_shift2 (positions_6nt_m5_rc)				; positions_6nt_m7 versus positions_6nt_m5_rc; m=15/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.912174; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 c 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 g 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 t 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032
positions_7nt_m6_shift2 (positions_7nt_m6)				; positions_6nt_m7 versus positions_7nt_m6; m=16/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.91088; --acaCACACACACACACACACACa ; cor=; Ncor= a 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 c 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 g 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 t 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108
positions_7nt_m8_shift2 (positions_7nt_m8)				; positions_6nt_m7 versus positions_7nt_m8; m=17/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.910129; --acACACACACACACACACACACa ; cor=; Ncor= a 0 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 c 0 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 g 0 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 t 0 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222
positions_7nt_m10_shift2 (positions_7nt_m10)				; positions_6nt_m7 versus positions_7nt_m10; m=18/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.908797; --acACACACACACACACACACACa ; cor=; Ncor= a 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 c 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 g 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 t 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023
positions_6nt_m6_shift0 (positions_6nt_m6)				; positions_6nt_m7 versus positions_6nt_m6; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.906723; acamACACACACACACACACACac- ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 0 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 0 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 0 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141 0
positions_6nt_m9_shift0 (positions_6nt_m9)				; positions_6nt_m7 versus positions_6nt_m9; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.901559; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0
positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)				; positions_6nt_m7 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.86155; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0
dyads_m10_shift6 (dyads_m10)				; positions_6nt_m7 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=5; strand=D; shift=6; score=0.734244; ------ACACACACACACACrCAC- ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0
oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)				; positions_6nt_m7 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=7; strand=D; shift=8; score=0.65446; --------ACACACACACACACAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0
oligos_6nt_mkv4_m2_shift9 (oligos_6nt_mkv4_m2)				; positions_6nt_m7 versus oligos_6nt_mkv4_m2; m=24/33; ncol2=16; w=0; offset=8; strand=D; shift=9; score=0.608179; ---------caCwCACAyACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 c 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 g 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 t 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421
oligos_6nt_mkv4_m5_rc_shift2 (oligos_6nt_mkv4_m5_rc)				; positions_6nt_m7 versus oligos_6nt_mkv4_m5_rc; m=25/33; ncol2=16; w=0; offset=1; strand=R; shift=2; score=0.602135; --acAsACACrCACAsac------- ; cor=; Ncor= a 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 0 0 0 0 0 c 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 0 0 0 0 0 g 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 0 0 0 0 0 t 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0 0 0 0 0 0
positions_6nt_m1_shift4 (positions_6nt_m1)				; positions_6nt_m7 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=3; strand=D; shift=4; score=0.563192; ----acACACrCACACrca------ ; cor=; Ncor= a 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 0 0 0 0 0 c 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 0 0 0 0 0 g 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 0 0 0 0 0 t 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0 0 0 0 0 0
dyads_m7_shift3 (dyads_m7)				; positions_6nt_m7 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=2; strand=D; shift=3; score=0.556779; ---camACACACACrCac------- ; cor=; Ncor= a 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 c 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 g 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 t 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0
oligos_7nt_mkv5_m4_shift11 (oligos_7nt_mkv5_m4)				; positions_6nt_m7 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.525607; -----------caCACAcACACac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 c 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 g 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 t 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0
oligos_7nt_mkv5_m5_shift5 (oligos_7nt_mkv5_m5)				; positions_6nt_m7 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=4; strand=D; shift=5; score=0.500263; -----caCACGCACACmca------ ; cor=; Ncor= a 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 0 0 0 c 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 0 0 0 g 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 0 0 0 t 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0 0 0 0
dyads_m4_shift1 (dyads_m4)				; positions_6nt_m7 versus dyads_m4; m=30/33; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.485205; -camACACACrCaC----------- ; cor=; Ncor= a 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 0 0 0 c 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 0 0 0 g 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 0 0 0 t 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0 0 0 0
dyads_m9_shift11 (dyads_m9)				; positions_6nt_m7 versus dyads_m9; m=31/33; ncol2=14; w=0; offset=10; strand=D; shift=11; score=0.482782; -----------caAACACACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 c 0 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 g 0 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 t 0 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431
dyads_m6_shift7 (dyads_m6)				; positions_6nt_m7 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=6; strand=D; shift=7; score=0.474485; -------camACACACAyac----- ; cor=; Ncor= a 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 c 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 g 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 t 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0
oligos_7nt_mkv5_m9_shift7 (oligos_7nt_mkv5_m9)				; positions_6nt_m7 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=6; strand=D; shift=7; score=0.417777; -------caCAsACACAAam----- ; cor=; Ncor= a 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 0 0 0 c 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 0 0 0 g 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 0 0 0 t 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m1_shift0 (oligos_6nt_mkv4_m1)				; oligos_6nt_mkv4_m1; m=0 (reference); ncol1=11; shift=0; ncol=11; cycCCACAAmm ; Alignment reference a 354 335 306 0 2 1250 50 1267 1364 427 379 c 516 530 804 1437 1382 94 1304 72 17 444 541 g 254 207 179 0 16 42 44 36 33 264 277 t 320 372 155 7 44 58 46 69 30 309 247
oligos_6nt_mkv4_m1_shift0 (oligos_6nt_mkv4_m1)				; oligos_6nt_mkv4_m1 versus oligos_6nt_mkv4_m1; m=1/3; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 1; cycCCACAAmm ; cor=; Ncor= a 354 335 306 0 2 1250 50 1267 1364 427 379 c 516 530 804 1437 1382 94 1304 72 17 444 541 g 254 207 179 0 16 42 44 36 33 264 277 t 320 372 155 7 44 58 46 69 30 309 247
oligos_6nt_mkv4_m9_shift0 (oligos_6nt_mkv4_m9)				; oligos_6nt_mkv4_m1 versus oligos_6nt_mkv4_m9; m=2/3; ncol2=11; w=0; offset=0; strand=D; shift=0; score=0.771457; mycCCACAGcv ; cor=; Ncor= a 351 293 194 0 22 1229 47 1193 25 335 370 c 446 514 929 1366 1252 59 1259 95 36 476 370 g 285 244 167 14 74 64 49 67 1298 267 380 t 320 351 112 22 54 50 47 47 43 324 282
dyads_m5_shift0 (dyads_m5)				; oligos_6nt_mkv4_m1 versus dyads_m5; m=3/3; ncol2=11; w=0; offset=0; strand=D; shift=0; score=0.706608; ccACCACCAcc ; cor=; Ncor= a 849 627 3918 50 30 4141 38 14 3899 676 705 c 2252 2408 191 4112 4096 103 4058 4126 239 2169 2498 g 690 543 129 102 115 126 110 85 188 692 474 t 681 894 234 208 231 102 266 247 146 935 795

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m7_shift9 (dyads_m7)				; dyads_m7; m=0 (reference); ncol1=15; shift=9; ncol=24; ---------camACACACACrCac ; Alignment reference a 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 c 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 g 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 t 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517
dyads_m7_shift9 (dyads_m7)				; dyads_m7 versus dyads_m7; m=1/33; ncol2=15; w=0; offset=0; strand=D; shift=9; score= 1; ---------camACACACACrCac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 c 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 g 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 t 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517
dyads_m9_shift9 (dyads_m9)				; dyads_m7 versus dyads_m9; m=2/33; ncol2=14; w=0; offset=0; strand=D; shift=9; score=0.867024; ---------caAACACACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 c 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 g 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 t 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0
oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)				; dyads_m7 versus oligos_7nt_mkv5_m8; m=3/33; ncol2=16; w=-1; offset=-1; strand=D; shift=8; score=0.826817; --------ACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224
dyads_m4_shift11 (dyads_m4)				; dyads_m7 versus dyads_m4; m=4/33; ncol2=13; w=0; offset=2; strand=D; shift=11; score=0.793844; -----------camACACACrCaC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 c 0 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 g 0 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 t 0 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355
dyads_m6_shift9 (dyads_m6)				; dyads_m7 versus dyads_m6; m=5/33; ncol2=13; w=0; offset=0; strand=D; shift=9; score=0.786561; ---------camACACACAyac-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 c 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 g 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 t 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0
oligos_7nt_mkv5_m4_shift11 (oligos_7nt_mkv5_m4)				; dyads_m7 versus oligos_7nt_mkv5_m4; m=6/33; ncol2=13; w=0; offset=2; strand=D; shift=11; score=0.780174; -----------caCACAcACACac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 c 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 g 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 t 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279
dyads_m10_shift6 (dyads_m10)				; dyads_m7 versus dyads_m10; m=7/33; ncol2=18; w=-3; offset=-3; strand=D; shift=6; score=0.771763; ------ACACACACACACACrCAC ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123
oligos_6nt_mkv4_m5_rc_shift8 (oligos_6nt_mkv4_m5_rc)				; dyads_m7 versus oligos_6nt_mkv4_m5_rc; m=8/33; ncol2=16; w=-1; offset=-1; strand=R; shift=8; score=0.767286; --------acAsACACrCACAsac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 c 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 g 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 t 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214
oligos_6nt_mkv4_m2_shift9 (oligos_6nt_mkv4_m2)				; dyads_m7 versus oligos_6nt_mkv4_m2; m=9/33; ncol2=16; w=0; offset=0; strand=D; shift=9; score=0.765845; ---------caCwCACAyACACmc ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 c 0 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 g 0 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 t 0 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362
positions_6nt_m1_shift8 (positions_6nt_m1)				; dyads_m7 versus positions_6nt_m1; m=10/33; ncol2=15; w=-1; offset=-1; strand=D; shift=8; score=0.764421; --------acACACrCACACrca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 c 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 g 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 t 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0
oligos_7nt_mkv5_m5_shift9 (oligos_7nt_mkv5_m5)				; dyads_m7 versus oligos_7nt_mkv5_m5; m=11/33; ncol2=14; w=0; offset=0; strand=D; shift=9; score=0.746311; ---------caCACGCACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 c 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 g 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 t 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0
oligos_7nt_mkv5_m9_shift9 (oligos_7nt_mkv5_m9)				; dyads_m7 versus oligos_7nt_mkv5_m9; m=12/33; ncol2=13; w=0; offset=0; strand=D; shift=9; score=0.634936; ---------caCAsACACAAam-- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 c 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 g 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 t 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0
positions_6nt_m8_shift7 (positions_6nt_m8)				; dyads_m7 versus positions_6nt_m8; m=13/33; ncol2=23; w=-2; offset=-2; strand=D; shift=7; score=0.597214; -------caCACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 c 0 0 0 0 0 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 g 0 0 0 0 0 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 t 0 0 0 0 0 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484
positions_7nt_m2_shift9 (positions_7nt_m2)				; dyads_m7 versus positions_7nt_m2; m=14/33; ncol2=24; w=0; offset=0; strand=D; shift=9; score=0.582325; ---------cacACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 c 0 0 0 0 0 0 0 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 g 0 0 0 0 0 0 0 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 t 0 0 0 0 0 0 0 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260
positions_6nt_m9_shift6 (positions_6nt_m9)				; dyads_m7 versus positions_6nt_m9; m=15/33; ncol2=24; w=-3; offset=-3; strand=D; shift=6; score=0.580494; ------acaCacACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 c 0 0 0 0 0 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 g 0 0 0 0 0 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 t 0 0 0 0 0 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204
positions_7nt_m9_shift9 (positions_7nt_m9)				; dyads_m7 versus positions_7nt_m9; m=16/33; ncol2=24; w=0; offset=0; strand=D; shift=9; score=0.570422; ---------caCACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 c 0 0 0 0 0 0 0 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 g 0 0 0 0 0 0 0 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 t 0 0 0 0 0 0 0 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379
positions_6nt_m10_shift7 (positions_6nt_m10)				; dyads_m7 versus positions_6nt_m10; m=17/33; ncol2=24; w=-2; offset=-2; strand=D; shift=7; score=0.569813; -------cacamACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 c 0 0 0 0 0 0 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 g 0 0 0 0 0 0 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 t 0 0 0 0 0 0 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208
positions_6nt_m6_shift8 (positions_6nt_m6)				; dyads_m7 versus positions_6nt_m6; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=8; score=0.569307; --------acamACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 c 0 0 0 0 0 0 0 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 g 0 0 0 0 0 0 0 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 t 0 0 0 0 0 0 0 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292
positions_7nt_m8_shift8 (positions_7nt_m8)				; dyads_m7 versus positions_7nt_m8; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=8; score=0.568594; --------acACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 c 0 0 0 0 0 0 0 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 g 0 0 0 0 0 0 0 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 t 0 0 0 0 0 0 0 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389
positions_7nt_m1_shift9 (positions_7nt_m1)				; dyads_m7 versus positions_7nt_m1; m=20/33; ncol2=24; w=0; offset=0; strand=D; shift=9; score=0.567138; ---------cacACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 c 0 0 0 0 0 0 0 0 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 g 0 0 0 0 0 0 0 0 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 t 0 0 0 0 0 0 0 0 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219
positions_7nt_m6_shift2 (positions_7nt_m6)				; dyads_m7 versus positions_7nt_m6; m=21/33; ncol2=24; w=-7; offset=-7; strand=D; shift=2; score=0.566228; --acaCACACACACACACACACAC ; cor=; Ncor= a 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 c 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 g 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 t 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658
positions_7nt_m10_shift2 (positions_7nt_m10)				; dyads_m7 versus positions_7nt_m10; m=22/33; ncol2=24; w=-7; offset=-7; strand=D; shift=2; score=0.565589; --acACACACACACACACACACAC ; cor=; Ncor= a 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 c 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 g 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 t 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527
positions_6nt_m2_shift5 (positions_6nt_m2)				; dyads_m7 versus positions_6nt_m2; m=23/33; ncol2=24; w=-4; offset=-4; strand=D; shift=5; score=0.564635; -----caCACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 c 0 0 0 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 g 0 0 0 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 t 0 0 0 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335
positions_6nt_m5_rc_shift4 (positions_6nt_m5_rc)				; dyads_m7 versus positions_6nt_m5_rc; m=24/33; ncol2=24; w=-5; offset=-5; strand=R; shift=4; score=0.564339; ----acaCACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 c 0 0 0 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 g 0 0 0 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 t 0 0 0 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483
dyads_m1_shift9 (dyads_m1)				; dyads_m7 versus dyads_m1; m=25/33; ncol2=24; w=0; offset=0; strand=D; shift=9; score=0.563533; ---------cacACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 c 0 0 0 0 0 0 0 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 g 0 0 0 0 0 0 0 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 t 0 0 0 0 0 0 0 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261
positions_7nt_m3_rc_shift9 (positions_7nt_m3_rc)				; dyads_m7 versus positions_7nt_m3_rc; m=26/33; ncol2=24; w=0; offset=0; strand=R; shift=9; score=0.562944; ---------cacACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 c 0 0 0 0 0 0 0 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 g 0 0 0 0 0 0 0 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 t 0 0 0 0 0 0 0 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244
positions_7nt_m7_shift5 (positions_7nt_m7)				; dyads_m7 versus positions_7nt_m7; m=27/33; ncol2=24; w=-4; offset=-4; strand=D; shift=5; score=0.559271; -----caCACACACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 c 0 0 0 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 g 0 0 0 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 t 0 0 0 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436
positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)				; dyads_m7 versus positions_6nt_m3_rc; m=28/33; ncol2=24; w=-9; offset=-9; strand=R; shift=0; score=0.559038; mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706
positions_6nt_m4_shift2 (positions_6nt_m4)				; dyads_m7 versus positions_6nt_m4; m=29/33; ncol2=24; w=-7; offset=-7; strand=D; shift=2; score=0.557893; --acrCACACACACACACACACAC ; cor=; Ncor= a 0 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 c 0 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 g 0 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 t 0 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603
positions_7nt_m5_shift8 (positions_7nt_m5)				; dyads_m7 versus positions_7nt_m5; m=30/33; ncol2=24; w=-1; offset=-1; strand=D; shift=8; score=0.557424; --------acaCACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 c 0 0 0 0 0 0 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 g 0 0 0 0 0 0 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 t 0 0 0 0 0 0 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397
positions_6nt_m7_shift7 (positions_6nt_m7)				; dyads_m7 versus positions_6nt_m7; m=31/33; ncol2=24; w=-2; offset=-2; strand=D; shift=7; score=0.556779; -------caCaCACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 c 0 0 0 0 0 0 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 g 0 0 0 0 0 0 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 t 0 0 0 0 0 0 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568
dyads_m8_shift9 (dyads_m8)				; dyads_m7 versus dyads_m8; m=32/33; ncol2=24; w=0; offset=0; strand=D; shift=9; score=0.556166; ---------CaCACACACACACAC ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 c 0 0 0 0 0 0 0 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 g 0 0 0 0 0 0 0 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 t 0 0 0 0 0 0 0 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269
positions_7nt_m4_shift1 (positions_7nt_m4)				; dyads_m7 versus positions_7nt_m4; m=33/33; ncol2=24; w=-8; offset=-8; strand=D; shift=1; score=0.555879; -caCACACACACACACACACACac ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
dyads_m8_shift1 (dyads_m8)				; dyads_m8; m=0 (reference); ncol1=24; shift=1; ncol=25; -CaCACACACACACACACACACrCa ; Alignment reference a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988
dyads_m8_shift1 (dyads_m8)				; dyads_m8 versus dyads_m8; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -CaCACACACACACACACACACrCa ; cor=; Ncor= a 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 5206 c 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 944 g 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 1578 t 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049 988
positions_7nt_m4_shift1 (positions_7nt_m4)				; dyads_m8 versus positions_7nt_m4; m=2/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.996557; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 6019 c 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 1221 g 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 1807 t 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297 1233
positions_7nt_m7_shift1 (positions_7nt_m7)				; dyads_m8 versus positions_7nt_m7; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.994701; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231
positions_6nt_m2_shift1 (positions_6nt_m2)				; dyads_m8 versus positions_6nt_m2; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.991818; -caCACACACACACACACACACaca ; cor=; Ncor= a 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111
dyads_m1_shift1 (dyads_m1)				; dyads_m8 versus dyads_m1; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990272; -cacACACACACACACACACACaCa ; cor=; Ncor= a 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002
positions_7nt_m9_shift1 (positions_7nt_m9)				; dyads_m8 versus positions_7nt_m9; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.987385; -caCACACACACACACACACACACa ; cor=; Ncor= a 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 c 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 g 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 t 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216
positions_7nt_m3_rc_shift1 (positions_7nt_m3_rc)				; dyads_m8 versus positions_7nt_m3_rc; m=7/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.986108; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 5629 c 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 905 g 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 1351 t 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963 888
positions_7nt_m2_shift1 (positions_7nt_m2)				; dyads_m8 versus positions_7nt_m2; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.985464; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 c 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 g 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 t 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894
positions_7nt_m1_shift1 (positions_7nt_m1)				; dyads_m8 versus positions_7nt_m1; m=9/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.98522; -cacACACACACACACACACACACa ; cor=; Ncor= a 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 5474 c 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 847 g 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 1236 t 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882 835
positions_6nt_m7_shift1 (positions_6nt_m7)				; dyads_m8 versus positions_6nt_m7; m=10/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.984395; -caCaCACACACACACACACACACa ; cor=; Ncor= a 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 6838 c 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 1035 g 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 1569 t 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139 1062
positions_6nt_m10_shift1 (positions_6nt_m10)				; dyads_m8 versus positions_6nt_m10; m=11/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.971999; -cacamACACACACACACACACACa ; cor=; Ncor= a 0 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 0 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 0 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 0 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785
positions_6nt_m8_shift1 (positions_6nt_m8)				; dyads_m8 versus positions_6nt_m8; m=12/33; ncol2=23; w=0; offset=0; strand=D; shift=1; score=0.948915; -caCACACACACACACACACACac- ; cor=; Ncor= a 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 0 c 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 0 g 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 0 t 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027 0
positions_7nt_m5_shift0 (positions_7nt_m5)				; dyads_m8 versus positions_7nt_m5; m=13/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.912672; acaCACACACACACACACACACac- ; cor=; Ncor= a 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 0 c 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 0 g 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 0 t 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250 0
positions_6nt_m5_rc_shift0 (positions_6nt_m5_rc)				; dyads_m8 versus positions_6nt_m5_rc; m=14/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.912591; acaCACACACACACACACACACac- ; cor=; Ncor= a 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 0 c 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 0 g 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 0 t 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346 0
positions_6nt_m4_shift0 (positions_6nt_m4)				; dyads_m8 versus positions_6nt_m4; m=15/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.912271; acrCACACACACACACACACACac- ; cor=; Ncor= a 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 0 c 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 0 g 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 0 t 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762 0
positions_7nt_m6_shift0 (positions_7nt_m6)				; dyads_m8 versus positions_7nt_m6; m=16/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.911584; acaCACACACACACACACACACac- ; cor=; Ncor= a 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 0 c 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 0 g 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 0 t 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314 0
positions_7nt_m10_shift0 (positions_7nt_m10)				; dyads_m8 versus positions_7nt_m10; m=17/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.910211; acACACACACACACACACACACaC- ; cor=; Ncor= a 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 0 c 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 0 g 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 0 t 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221 0
positions_7nt_m8_shift0 (positions_7nt_m8)				; dyads_m8 versus positions_7nt_m8; m=18/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.908447; acACACACACACACACACACACac- ; cor=; Ncor= a 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 0 c 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 0 g 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 0 t 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444 0
positions_6nt_m6_shift0 (positions_6nt_m6)				; dyads_m8 versus positions_6nt_m6; m=19/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.906305; acamACACACACACACACACACac- ; cor=; Ncor= a 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 0 c 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 0 g 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 0 t 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141 0
positions_6nt_m9_shift0 (positions_6nt_m9)				; dyads_m8 versus positions_6nt_m9; m=20/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.903809; acaCacACACACACACACACACac- ; cor=; Ncor= a 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 0 c 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 0 g 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 0 t 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244 0
positions_6nt_m3_rc_shift0 (positions_6nt_m3_rc)				; dyads_m8 versus positions_6nt_m3_rc; m=21/33; ncol2=24; w=-1; offset=-1; strand=R; shift=0; score=0.852709; mmmmmmaCACACrCACACACaCac- ; cor=; Ncor= a 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 0 c 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 0 g 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 0 t 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706 0
dyads_m10_shift6 (dyads_m10)				; dyads_m8 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=5; strand=D; shift=6; score=0.737754; ------ACACACACACACACrCAC- ; cor=; Ncor= a 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 0 c 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 0 g 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 0 t 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123 0
oligos_7nt_mkv5_m8_shift8 (oligos_7nt_mkv5_m8)				; dyads_m8 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=7; strand=D; shift=8; score=0.660292; --------ACACACACACACACAC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 c 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 g 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 t 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0
oligos_6nt_mkv4_m2_shift7 (oligos_6nt_mkv4_m2)				; dyads_m8 versus oligos_6nt_mkv4_m2; m=24/33; ncol2=16; w=0; offset=6; strand=D; shift=7; score=0.602003; -------caCwCACAyACACmca-- ; cor=; Ncor= a 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 0 c 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 0 g 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 0 t 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0 0
oligos_6nt_mkv4_m5_rc_shift8 (oligos_6nt_mkv4_m5_rc)				; dyads_m8 versus oligos_6nt_mkv4_m5_rc; m=25/33; ncol2=16; w=0; offset=7; strand=R; shift=8; score=0.596216; --------acAsACACrCACAsac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 c 0 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 g 0 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 t 0 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0
positions_6nt_m1_shift10 (positions_6nt_m1)				; dyads_m8 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=9; strand=D; shift=10; score=0.576769; ----------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601
dyads_m7_shift1 (dyads_m7)				; dyads_m8 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=0; strand=D; shift=1; score=0.556166; -camACACACACrCac--------- ; cor=; Ncor= a 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 0 0 c 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 0 0 g 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 0 0 t 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m4_shift9 (oligos_7nt_mkv5_m4)				; dyads_m8 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=8; strand=D; shift=9; score=0.523645; ---------caCACAcACACac--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 0 0 c 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 0 0 g 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 0 0 t 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0 0 0
oligos_7nt_mkv5_m5_shift1 (oligos_7nt_mkv5_m5)				; dyads_m8 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=0; strand=D; shift=1; score=0.498354; -caCACGCACACmca---------- ; cor=; Ncor= a 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 0 0 0 0 0 0 0 c 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 0 0 0 0 0 0 0 g 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 0 0 0 0 0 0 0 t 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0 0 0 0 0 0 0 0
dyads_m9_shift11 (dyads_m9)				; dyads_m8 versus dyads_m9; m=30/33; ncol2=14; w=0; offset=10; strand=D; shift=11; score=0.486624; -----------caAACACACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 c 0 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 g 0 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 t 0 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431
dyads_m6_shift5 (dyads_m6)				; dyads_m8 versus dyads_m6; m=31/33; ncol2=13; w=0; offset=4; strand=D; shift=5; score=0.480159; -----camACACACAyac------- ; cor=; Ncor= a 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 0 0 0 c 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 0 0 0 g 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 0 0 0 t 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0 0 0 0
dyads_m4_shift1 (dyads_m4)				; dyads_m8 versus dyads_m4; m=32/33; ncol2=13; w=0; offset=0; strand=D; shift=1; score=0.468881; -camACACACrCaC----------- ; cor=; Ncor= a 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 0 0 0 c 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 0 0 0 g 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 0 0 0 t 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m9_shift11 (oligos_7nt_mkv5_m9)				; dyads_m8 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=10; strand=D; shift=11; score=0.427745; -----------caCAsACACAAam- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 c 0 0 0 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 g 0 0 0 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 t 0 0 0 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
positions_7nt_m5_shift1 (positions_7nt_m5)				; positions_7nt_m5; m=0 (reference); ncol1=24; shift=1; ncol=25; -acaCACACACACACACACACACac ; Alignment reference a 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250
positions_7nt_m5_shift1 (positions_7nt_m5)				; positions_7nt_m5 versus positions_7nt_m5; m=1/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score= 1; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 242 9355 383 7148 1002 c 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 9623 281 9224 872 7163 g 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 243 624 433 1587 1186 t 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287 493 341 561 994 1250
positions_6nt_m5_rc_shift1 (positions_6nt_m5_rc)				; positions_7nt_m5 versus positions_6nt_m5_rc; m=2/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.993497; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 1092 c 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 7409 g 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 1227 t 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032 1346
positions_7nt_m6_shift1 (positions_7nt_m6)				; positions_7nt_m5 versus positions_7nt_m6; m=3/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.992659; -acaCACACACACACACACACACac ; cor=; Ncor= a 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 488 7188 1149 c 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 9649 1002 7534 g 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 523 2020 1321 t 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508 658 1108 1314
positions_6nt_m4_shift1 (positions_6nt_m4)				; positions_7nt_m5 versus positions_6nt_m4; m=4/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990877; -acrCACACACACACACACACACac ; cor=; Ncor= a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 621 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 4259 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 740 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646 762
positions_7nt_m10_shift1 (positions_7nt_m10)				; positions_7nt_m5 versus positions_7nt_m10; m=5/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.99087; -acACACACACACACACACACACaC ; cor=; Ncor= a 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 388 7278 1077 c 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 9811 898 7628 g 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 393 1920 1193 t 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405 527 1023 1221
positions_6nt_m6_shift1 (positions_6nt_m6)				; positions_7nt_m5 versus positions_6nt_m6; m=6/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.990352; -acamACACACACACACACACACac ; cor=; Ncor= a 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 997 c 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 6364 g 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 1161 t 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950 1141
positions_7nt_m8_shift1 (positions_7nt_m8)				; positions_7nt_m5 versus positions_7nt_m8; m=7/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.988633; -acACACACACACACACACACACac ; cor=; Ncor= a 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 888 7855 1326 c 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 8529 1299 8000 g 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 1524 1853 1459 t 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535 1288 1222 1444
positions_6nt_m9_shift1 (positions_6nt_m9)				; positions_7nt_m5 versus positions_6nt_m9; m=8/33; ncol2=24; w=0; offset=0; strand=D; shift=1; score=0.979142; -acaCacACACACACACACACACac ; cor=; Ncor= a 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 1014 c 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 6677 g 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 1023 t 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142 1244
positions_6nt_m8_shift2 (positions_6nt_m8)				; positions_7nt_m5 versus positions_6nt_m8; m=9/33; ncol2=23; w=0; offset=1; strand=D; shift=2; score=0.946429; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 1738 c 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 10165 g 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 1746 t 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903 2027
positions_6nt_m3_rc_shift1 (positions_6nt_m3_rc)				; positions_7nt_m5 versus positions_6nt_m3_rc; m=10/33; ncol2=24; w=0; offset=0; strand=R; shift=1; score=0.919201; -mmmmmmaCACACrCACACACaCac ; cor=; Ncor= a 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 357 3363 625 c 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 4351 646 3680 g 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 397 913 591 t 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902 497 680 706
positions_7nt_m9_shift0 (positions_7nt_m9)				; positions_7nt_m5 versus positions_7nt_m9; m=11/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score= 0.9162; caCACACACACACACACACACACa- ; cor=; Ncor= a 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 476 8884 1073 7027 0 c 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 9602 718 7853 1299 0 g 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 580 1124 1199 1899 0 t 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406 783 715 1316 1216 0
positions_7nt_m1_shift2 (positions_7nt_m1)				; positions_7nt_m5 versus positions_7nt_m1; m=12/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.915553; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 119 7737 210 6840 676 c 0 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 7824 128 7681 381 6045 g 0 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 142 364 195 702 789 t 0 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147 307 163 306 469 882
dyads_m1_shift2 (dyads_m1)				; positions_7nt_m5 versus dyads_m1; m=13/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.915426; --cacACACACACACACACACACaC ; cor=; Ncor= a 0 0 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 c 0 0 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 g 0 0 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 t 0 0 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034
positions_7nt_m2_shift0 (positions_7nt_m2)				; positions_7nt_m5 versus positions_7nt_m2; m=14/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.914548; cacACACACACACACACACACACa- ; cor=; Ncor= a 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 316 7076 784 5592 0 c 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 7523 492 6171 947 0 g 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 424 772 902 1394 0 t 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248 564 487 970 894 0
positions_6nt_m7_shift2 (positions_6nt_m7)				; positions_7nt_m5 versus positions_6nt_m7; m=15/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.914459; --caCaCACACACACACACACACAC ; cor=; Ncor= a 0 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 171 9661 256 9064 813 c 0 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 9726 164 9528 359 7623 g 0 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 187 464 266 638 929 t 0 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213 420 215 454 443 1139
positions_7nt_m7_shift2 (positions_7nt_m7)				; positions_7nt_m5 versus positions_7nt_m7; m=16/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.913937; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 c 0 0 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 g 0 0 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 t 0 0 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313
positions_7nt_m3_rc_shift2 (positions_7nt_m3_rc)				; positions_7nt_m5 versus positions_7nt_m3_rc; m=17/33; ncol2=24; w=0; offset=1; strand=R; shift=2; score=0.913257; --cacACACACACACACACACACAC ; cor=; Ncor= a 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 319 7862 305 7054 762 c 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 6546 225 7546 469 6174 g 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 344 460 386 789 874 t 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180 1564 226 536 461 963
positions_7nt_m4_shift2 (positions_7nt_m4)				; positions_7nt_m5 versus positions_7nt_m4; m=18/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.913133; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 166 9669 157 9532 200 9085 353 6692 986 c 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 9579 72 9630 132 9472 245 8981 792 6838 g 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 149 367 129 395 189 542 418 1410 1159 t 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170 386 172 364 221 419 408 528 1386 1297
dyads_m8_shift2 (dyads_m8)				; positions_7nt_m5 versus dyads_m8; m=19/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.912672; --CaCACACACACACACACACACrC ; cor=; Ncor= a 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 287 8149 126 8050 197 7706 289 5239 803 c 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 6905 96 8166 91 8040 211 7677 537 5955 g 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 255 327 135 430 155 518 346 2296 909 t 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131 1269 144 289 145 324 281 404 644 1049
positions_6nt_m2_shift2 (positions_6nt_m2)				; positions_7nt_m5 versus positions_6nt_m2; m=20/33; ncol2=24; w=0; offset=1; strand=D; shift=2; score=0.908713; --caCACACACACACACACACACac ; cor=; Ncor= a 0 0 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 c 0 0 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 g 0 0 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 t 0 0 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256
positions_6nt_m10_shift0 (positions_6nt_m10)				; positions_7nt_m5 versus positions_6nt_m10; m=21/33; ncol2=24; w=-1; offset=-1; strand=D; shift=0; score=0.907244; cacamACACACACACACACACACa- ; cor=; Ncor= a 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 0 c 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 0 g 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 0 t 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785 0
dyads_m10_shift7 (dyads_m10)				; positions_7nt_m5 versus dyads_m10; m=22/33; ncol2=18; w=0; offset=6; strand=D; shift=7; score=0.73514; -------ACACACACACACACrCAC ; cor=; Ncor= a 0 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910 c 0 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303 g 0 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877 t 0 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123
oligos_7nt_mkv5_m8_shift5 (oligos_7nt_mkv5_m8)				; positions_7nt_m5 versus oligos_7nt_mkv5_m8; m=23/33; ncol2=16; w=0; offset=4; strand=D; shift=5; score=0.655631; -----ACACACACACACACAC---- ; cor=; Ncor= a 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 1079 0 0 0 0 c 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 7805 0 0 0 0 g 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 1137 0 0 0 0 t 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929 1224 0 0 0 0
oligos_6nt_mkv4_m5_rc_shift3 (oligos_6nt_mkv4_m5_rc)				; positions_7nt_m5 versus oligos_6nt_mkv4_m5_rc; m=24/33; ncol2=16; w=0; offset=2; strand=R; shift=3; score=0.607868; ---acAsACACrCACAsac------ ; cor=; Ncor= a 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 0 0 0 0 0 c 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 0 0 0 0 0 g 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 0 0 0 0 0 t 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0 0 0 0 0 0
oligos_6nt_mkv4_m2_shift8 (oligos_6nt_mkv4_m2)				; positions_7nt_m5 versus oligos_6nt_mkv4_m2; m=25/33; ncol2=16; w=0; offset=7; strand=D; shift=8; score=0.589586; --------caCwCACAyACACmca- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 0 c 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 0 g 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 0 t 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421 0
positions_6nt_m1_shift5 (positions_6nt_m1)				; positions_7nt_m5 versus positions_6nt_m1; m=26/33; ncol2=15; w=0; offset=4; strand=D; shift=5; score=0.564864; -----acACACrCACACrca----- ; cor=; Ncor= a 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 0 0 0 0 0 c 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 0 0 0 0 0 g 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 0 0 0 0 0 t 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601 0 0 0 0 0
dyads_m7_shift2 (dyads_m7)				; positions_7nt_m5 versus dyads_m7; m=27/33; ncol2=15; w=0; offset=1; strand=D; shift=2; score=0.557424; --camACACACACrCac-------- ; cor=; Ncor= a 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 496 0 0 0 0 0 0 0 0 c 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 2402 0 0 0 0 0 0 0 0 g 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 435 0 0 0 0 0 0 0 0 t 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558 517 0 0 0 0 0 0 0 0
oligos_7nt_mkv5_m4_shift12 (oligos_7nt_mkv5_m4)				; positions_7nt_m5 versus oligos_7nt_mkv5_m4; m=28/33; ncol2=13; w=0; offset=11; strand=D; shift=12; score=0.525534; ------------caCACAcACACac ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 c 0 0 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 g 0 0 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 t 0 0 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279
oligos_7nt_mkv5_m5_shift6 (oligos_7nt_mkv5_m5)				; positions_7nt_m5 versus oligos_7nt_mkv5_m5; m=29/33; ncol2=14; w=0; offset=5; strand=D; shift=6; score=0.499779; ------caCACGCACACmca----- ; cor=; Ncor= a 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 0 0 0 0 0 c 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 0 0 0 0 0 g 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 0 0 0 0 0 t 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501 0 0 0 0 0
dyads_m4_shift2 (dyads_m4)				; positions_7nt_m5 versus dyads_m4; m=30/33; ncol2=13; w=0; offset=1; strand=D; shift=2; score=0.486415; --camACACACrCaC---------- ; cor=; Ncor= a 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 0 0 0 0 0 0 0 0 0 c 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 0 0 0 0 0 0 0 0 0 g 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 0 0 0 0 0 0 0 0 0 t 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0 0 0 0 0 0 0 0 0 0
dyads_m9_shift2 (dyads_m9)				; positions_7nt_m5 versus dyads_m9; m=31/33; ncol2=14; w=0; offset=1; strand=D; shift=2; score=0.485093; --caAACACACACmca--------- ; cor=; Ncor= a 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 0 0 0 0 0 0 0 0 0 c 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 0 0 0 0 0 0 0 0 0 g 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 0 0 0 0 0 0 0 0 0 t 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431 0 0 0 0 0 0 0 0 0
dyads_m6_shift8 (dyads_m6)				; positions_7nt_m5 versus dyads_m6; m=32/33; ncol2=13; w=0; offset=7; strand=D; shift=8; score=0.474462; --------camACACACAyac---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 0 0 0 c 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 0 0 0 g 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 0 0 0 t 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0 0 0 0
oligos_7nt_mkv5_m9_shift8 (oligos_7nt_mkv5_m9)				; positions_7nt_m5 versus oligos_7nt_mkv5_m9; m=33/33; ncol2=13; w=0; offset=7; strand=D; shift=8; score=0.418371; --------caCAsACACAAam---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 440 976 136 1526 103 1791 52 1809 40 1764 1473 795 494 0 0 0 0 c 0 0 0 0 0 0 0 0 845 301 1425 176 472 44 1715 23 1761 36 298 432 796 0 0 0 0 g 0 0 0 0 0 0 0 0 315 389 183 111 1213 34 68 39 57 49 71 334 324 0 0 0 0 t 0 0 0 0 0 0 0 0 284 218 140 71 96 15 49 13 26 35 42 323 270 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv5_m5_shift10 (oligos_7nt_mkv5_m5)				; oligos_7nt_mkv5_m5; m=0 (reference); ncol1=14; shift=10; ncol=24; ----------caCACGCACACmca ; Alignment reference a 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 c 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 g 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 t 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501
oligos_7nt_mkv5_m5_shift10 (oligos_7nt_mkv5_m5)				; oligos_7nt_mkv5_m5 versus oligos_7nt_mkv5_m5; m=1/32; ncol2=14; w=0; offset=0; strand=D; shift=10; score= 1; ----------caCACGCACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 460 1509 205 2555 45 520 37 2687 35 2652 46 968 624 1177 c 0 0 0 0 0 0 0 0 0 0 1722 359 2317 95 2713 96 2718 45 2733 70 2700 1562 1283 628 g 0 0 0 0 0 0 0 0 0 0 280 595 123 87 48 2153 40 64 21 60 67 155 526 545 t 0 0 0 0 0 0 0 0 0 0 389 388 206 114 45 82 56 55 62 69 38 166 418 501
positions_6nt_m1_shift9 (positions_6nt_m1)				; oligos_7nt_mkv5_m5 versus positions_6nt_m1; m=2/32; ncol2=15; w=-1; offset=-1; strand=D; shift=9; score=0.866036; ---------acACACrCACACrca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 2460 417 3456 98 3539 72 1434 73 3511 79 3438 73 998 561 1745 c 0 0 0 0 0 0 0 0 0 435 2532 54 3524 54 3551 73 3555 25 3556 91 3576 237 2074 601 g 0 0 0 0 0 0 0 0 0 560 284 179 63 121 74 2125 61 193 54 179 89 2345 565 858 t 0 0 0 0 0 0 0 0 0 350 572 116 120 91 108 173 116 76 116 97 67 225 605 601
dyads_m9_shift10 (dyads_m9)				; oligos_7nt_mkv5_m5 versus dyads_m9; m=3/32; ncol2=14; w=0; offset=0; strand=D; shift=10; score=0.82417; ----------caAACACACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 665 1337 1976 2446 92 2530 67 2498 59 2477 62 891 527 1266 c 0 0 0 0 0 0 0 0 0 0 1305 637 478 94 2450 56 2487 87 2538 99 2482 1505 1329 555 g 0 0 0 0 0 0 0 0 0 0 367 345 63 67 43 57 48 47 32 30 70 152 464 441 t 0 0 0 0 0 0 0 0 0 0 356 374 176 86 108 50 91 61 64 87 79 145 373 431
oligos_7nt_mkv5_m4_shift10 (oligos_7nt_mkv5_m4)				; oligos_7nt_mkv5_m5 versus oligos_7nt_mkv5_m4; m=4/32; ncol2=13; w=0; offset=0; strand=D; shift=10; score=0.799822; ----------caCACAcACACac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1616 5949 121 8874 84 8611 2218 8784 54 8849 112 5929 1185 0 c 0 0 0 0 0 0 0 0 0 0 5506 794 8776 44 8848 265 5812 99 8906 48 8808 804 5541 0 g 0 0 0 0 0 0 0 0 0 0 663 1558 47 67 42 67 257 96 17 101 57 1381 1022 0 t 0 0 0 0 0 0 0 0 0 0 1242 726 83 42 53 84 740 48 50 29 50 913 1279 0
dyads_m7_shift10 (dyads_m7)				; oligos_7nt_mkv5_m5 versus dyads_m7; m=5/32; ncol2=15; w=0; offset=0; strand=D; shift=10; score=0.746311; ----------camACACACACrCa ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 746 2162 2054 3563 103 3664 76 3641 88 3518 93 1154 127 2089 c 0 0 0 0 0 0 0 0 0 0 2128 728 1297 97 3543 51 3629 30 3616 79 3585 176 3437 446 g 0 0 0 0 0 0 0 0 0 0 453 495 139 100 64 94 52 113 38 139 81 2268 151 757 t 0 0 0 0 0 0 0 0 0 0 523 465 360 90 140 41 93 66 108 114 91 252 135 558
oligos_7nt_mkv5_m8_shift9 (oligos_7nt_mkv5_m8)				; oligos_7nt_mkv5_m5 versus oligos_7nt_mkv5_m8; m=6/32; ncol2=16; w=-1; offset=-1; strand=D; shift=9; score=0.731657; ---------ACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 8417 950 10951 81 10965 77 11008 365 10967 66 10969 97 10629 540 7871 c 0 0 0 0 0 0 0 0 0 930 9006 72 10941 81 10953 55 8641 61 10901 68 10841 199 8182 1031 g 0 0 0 0 0 0 0 0 0 1252 434 157 68 126 82 127 261 144 98 141 131 216 1684 1414 t 0 0 0 0 0 0 0 0 0 646 855 65 155 73 133 55 1978 73 180 67 176 201 839 929
oligos_6nt_mkv4_m2_shift8 (oligos_6nt_mkv4_m2)				; oligos_7nt_mkv5_m5 versus oligos_6nt_mkv4_m2; m=7/32; ncol2=16; w=-2; offset=-2; strand=D; shift=8; score=0.719043; --------caCwCACAyACACmca ; cor=; Ncor= a 0 0 0 0 0 0 0 0 354 1372 201 1288 45 2275 28 2326 80 2334 48 2249 76 1031 414 1178 c 0 0 0 0 0 0 0 0 1513 351 1970 137 2340 82 2376 70 757 75 2331 94 2225 1092 1338 465 g 0 0 0 0 0 0 0 0 219 379 117 231 33 68 23 50 41 26 38 70 95 215 382 432 t 0 0 0 0 0 0 0 0 410 394 208 840 78 71 69 50 1618 61 79 83 100 158 362 421
dyads_m6_shift10 (dyads_m6)				; oligos_7nt_mkv5_m5 versus dyads_m6; m=8/32; ncol2=13; w=0; offset=0; strand=D; shift=10; score=0.704792; ----------camACACACAyac- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 641 1787 1910 2920 40 2982 31 2973 30 2915 148 1847 393 0 c 0 0 0 0 0 0 0 0 0 0 1706 619 936 41 2945 17 2942 28 2937 41 987 432 1939 0 g 0 0 0 0 0 0 0 0 0 0 346 362 48 33 15 30 21 19 24 30 98 415 351 0 t 0 0 0 0 0 0 0 0 0 0 345 270 144 44 38 9 44 18 47 52 1805 344 355 0
dyads_m4_shift10 (dyads_m4)				; oligos_7nt_mkv5_m5 versus dyads_m4; m=9/32; ncol2=13; w=0; offset=0; strand=D; shift=10; score=0.699014; ----------camACACACrCaC- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 692 1932 1963 3124 46 3190 60 3155 31 986 38 2067 370 0 c 0 0 0 0 0 0 0 0 0 0 1862 667 1096 52 3156 14 3160 33 3190 50 3147 251 2240 0 g 0 0 0 0 0 0 0 0 0 0 346 403 68 60 25 53 18 45 21 2134 51 608 304 0 t 0 0 0 0 0 0 0 0 0 0 369 267 142 33 42 12 31 36 27 99 33 343 355 0
oligos_6nt_mkv4_m5_rc_shift7 (oligos_6nt_mkv4_m5_rc)				; oligos_7nt_mkv5_m5 versus oligos_6nt_mkv4_m5_rc; m=10/32; ncol2=16; w=-3; offset=-3; strand=R; shift=7; score=0.694767; -------acAsACACrCACAsac- ; cor=; Ncor= a 0 0 0 0 0 0 0 1060 237 1560 90 1619 38 1626 36 575 28 1623 27 1567 83 977 294 0 c 0 0 0 0 0 0 0 211 1041 67 898 28 1556 23 1593 24 1604 14 1580 38 760 280 895 0 g 0 0 0 0 0 0 0 297 217 57 611 38 62 32 48 1077 43 39 50 62 792 260 294 0 t 0 0 0 0 0 0 0 129 202 13 98 12 41 16 20 21 22 21 40 30 62 180 214 0
dyads_m10_shift7 (dyads_m10)				; oligos_7nt_mkv5_m5 versus dyads_m10; m=11/32; ncol2=18; w=-3; offset=-3; strand=D; shift=7; score=0.658409; -------ACACACACACACACrCA ; cor=; Ncor= a 0 0 0 0 0 0 0 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 c 0 0 0 0 0 0 0 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 g 0 0 0 0 0 0 0 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 t 0 0 0 0 0 0 0 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902
positions_6nt_m8_shift2 (positions_6nt_m8)				; oligos_7nt_mkv5_m5 versus positions_6nt_m8; m=12/32; ncol2=23; w=-8; offset=-8; strand=D; shift=2; score=0.537212; --caCACACACACACACACACACa ; cor=; Ncor= a 0 0 2460 9462 1680 11541 1245 11512 462 14464 272 14508 243 14760 268 12041 193 14539 202 13994 358 10794 1132 9491 c 0 0 9716 2041 11540 1235 12569 861 14478 217 14844 95 14960 93 14687 257 14777 109 14838 246 14341 975 11817 1687 g 0 0 1392 2346 934 1626 614 1753 238 545 144 687 129 484 217 2809 182 663 152 939 373 1950 1257 2595 t 0 0 2108 1827 1522 1274 1248 1550 498 450 416 386 344 339 504 569 524 365 484 497 604 1957 1470 1903
positions_6nt_m9_shift1 (positions_6nt_m9)				; oligos_7nt_mkv5_m5 versus positions_6nt_m9; m=13/32; ncol2=24; w=-9; offset=-9; strand=D; shift=1; score=0.517106; -acaCacACACACACACACACACa ; cor=; Ncor= a 0 5382 1628 6496 1163 6198 1950 6965 341 9355 152 9447 127 9572 127 7544 82 9553 64 9347 116 7140 653 6251 c 0 1768 5987 1310 7182 1877 6536 1286 9166 169 9522 71 9641 64 9499 131 9623 49 9636 85 9519 511 7825 1066 g 0 1480 953 1117 718 1014 540 1076 151 256 61 300 49 195 105 1952 60 217 54 337 129 1051 660 1499 t 0 1328 1390 1035 895 869 932 631 300 178 223 140 141 127 227 331 193 139 204 189 194 1256 820 1142
positions_6nt_m3_rc_shift3 (positions_6nt_m3_rc)				; oligos_7nt_mkv5_m5 versus positions_6nt_m3_rc; m=14/32; ncol2=24; w=-7; offset=-7; strand=R; shift=3; score=0.512505; ---mmmmmmaCACACrCACACACa ; cor=; Ncor= a 0 0 0 2011 1442 1854 2066 2250 1848 3060 327 5051 141 5255 110 3761 94 5383 53 5329 51 5292 112 3732 c 0 0 0 1569 2242 2228 2070 1991 2606 1228 4915 126 5255 75 5316 123 5324 30 5399 32 5414 63 5253 350 g 0 0 0 953 902 700 669 698 437 842 133 282 60 153 68 1474 58 117 33 175 36 134 94 618 t 0 0 0 1069 1016 820 797 663 711 472 227 143 146 119 108 244 126 72 117 66 101 113 143 902
positions_7nt_m4_shift10 (positions_7nt_m4)				; oligos_7nt_mkv5_m5 versus positions_7nt_m4; m=15/32; ncol2=24; w=0; offset=0; strand=D; shift=10; score=0.503422; ----------caCACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1411 6688 588 8772 382 7274 271 9586 177 9675 132 9756 885 9613 c 0 0 0 0 0 0 0 0 0 0 6774 1027 8807 397 9162 394 9474 123 9691 81 9771 133 8427 113 g 0 0 0 0 0 0 0 0 0 0 789 1594 306 670 245 2101 160 362 102 350 110 230 285 384 t 0 0 0 0 0 0 0 0 0 0 1306 971 579 441 491 511 375 209 310 174 267 161 683 170
positions_7nt_m9_shift4 (positions_7nt_m9)				; oligos_7nt_mkv5_m5 versus positions_7nt_m9; m=16/32; ncol2=24; w=-6; offset=-6; strand=D; shift=4; score=0.501169; ----caCACACACACACACACACA ; cor=; Ncor= a 0 0 0 0 1668 7209 1132 7973 469 10275 299 10514 230 10825 194 9113 128 10940 126 10715 134 10578 481 9988 c 0 0 0 0 7348 1385 8663 830 10214 268 10624 118 10771 82 10756 170 10909 59 10823 97 10752 183 8573 363 g 0 0 0 0 933 1628 564 1409 258 546 126 508 121 319 152 1786 114 311 113 446 162 445 490 684 t 0 0 0 0 1492 1219 1082 1229 500 352 392 301 319 215 339 372 290 131 379 183 393 235 1897 406
positions_7nt_m2_shift4 (positions_7nt_m2)				; oligos_7nt_mkv5_m5 versus positions_7nt_m2; m=17/32; ncol2=24; w=-6; offset=-6; strand=D; shift=4; score=0.50041; ----cacACACACACACACACACA ; cor=; Ncor= a 0 0 0 0 1371 5819 1969 7702 391 8156 251 8294 175 8394 134 7106 85 8496 76 8335 89 8213 339 7867 c 0 0 0 0 5649 1162 5719 392 7949 166 8219 59 8364 64 8362 116 8459 35 8409 61 8357 130 6600 255 g 0 0 0 0 759 1108 357 486 164 361 101 342 80 243 100 1356 68 212 82 320 105 335 379 457 t 0 0 0 0 1048 738 782 247 323 144 256 132 208 126 231 249 215 84 260 111 276 149 1509 248
positions_6nt_m7_shift6 (positions_6nt_m7)				; oligos_7nt_mkv5_m5 versus positions_6nt_m7; m=18/32; ncol2=24; w=-4; offset=-4; strand=D; shift=6; score=0.500263; ------caCaCACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 1601 6402 1143 7096 488 9085 335 9510 274 8088 170 10007 104 9927 116 9897 382 9711 c 0 0 0 0 0 0 6562 1373 7767 861 9231 280 9649 182 9672 237 9933 69 10013 72 9958 116 8217 148 g 0 0 0 0 0 0 886 1507 586 1326 240 685 144 466 187 1757 101 271 82 358 122 321 337 432 t 0 0 0 0 0 0 1455 1222 1008 1221 545 454 376 346 371 422 300 157 305 147 308 170 1568 213
positions_7nt_m5_shift5 (positions_7nt_m5)				; oligos_7nt_mkv5_m5 versus positions_7nt_m5; m=19/32; ncol2=24; w=-5; offset=-5; strand=D; shift=5; score=0.499779; -----acaCACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 6409 1437 7009 642 9296 365 9613 292 9893 224 8398 140 10131 113 9926 123 9853 417 9501 c 0 0 0 0 0 1519 7006 1361 9032 358 9612 184 9804 124 9846 195 10067 63 10047 76 9935 138 8200 225 g 0 0 0 0 0 1482 770 1405 309 587 163 524 137 370 160 1667 103 288 107 427 146 397 371 588 t 0 0 0 0 0 1191 1388 826 618 360 461 280 368 214 371 341 291 119 334 172 397 213 1613 287
positions_7nt_m1_shift6 (positions_7nt_m1)				; oligos_7nt_mkv5_m5 versus positions_7nt_m1; m=20/32; ncol2=24; w=-4; offset=-4; strand=D; shift=6; score=0.499369; ------cacACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 1325 5460 1930 7174 389 7639 245 7859 178 6624 109 8089 80 7992 79 7974 290 7794 c 0 0 0 0 0 0 5326 1145 5354 416 7519 142 7819 93 7821 162 8024 33 8052 50 7992 74 6542 115 g 0 0 0 0 0 0 699 1070 367 506 146 426 101 291 135 1329 64 194 48 258 102 224 247 336 t 0 0 0 0 0 0 1042 717 741 296 338 185 227 149 258 277 195 76 212 92 219 120 1313 147
positions_7nt_m8_shift3 (positions_7nt_m8)				; oligos_7nt_mkv5_m5 versus positions_7nt_m8; m=21/32; ncol2=24; w=-7; offset=-7; strand=D; shift=3; score= 0.4984; ---acACACACACACACACACACA ; cor=; Ncor= a 0 0 0 7169 1889 8823 1248 9670 2286 10992 395 11345 273 11599 196 9671 149 11577 142 11479 179 11351 254 10460 c 0 0 0 1858 7685 1241 9320 957 8585 382 11271 121 11502 81 11550 203 11510 62 11558 86 11460 175 11129 466 g 0 0 0 1814 1023 1273 688 976 484 542 183 547 142 363 165 1997 144 418 140 498 179 457 336 768 t 0 0 0 1388 1632 892 973 626 874 313 380 216 312 186 318 358 426 172 389 166 411 246 510 535
dyads_m8_shift10 (dyads_m8)				; oligos_7nt_mkv5_m5 versus dyads_m8; m=22/32; ncol2=24; w=0; offset=0; strand=D; shift=10; score=0.498354; ----------CaCACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 1110 5902 478 7622 282 6458 220 8220 122 8312 89 8384 113 8213 c 0 0 0 0 0 0 0 0 0 0 6008 782 7630 263 7977 259 8105 71 8298 44 8374 52 8262 80 g 0 0 0 0 0 0 0 0 0 0 588 1258 212 524 156 1646 115 279 66 258 59 168 103 292 t 0 0 0 0 0 0 0 0 0 0 1010 774 396 307 301 353 276 146 230 102 194 112 238 131
positions_7nt_m7_shift0 (positions_7nt_m7)				; oligos_7nt_mkv5_m5 versus positions_7nt_m7; m=23/32; ncol2=24; w=-10; offset=-10; strand=D; shift=0; score=0.497746; caCACACACACACACACACACaca ; cor=; Ncor= a 1565 7144 877 8992 421 9754 633 10072 211 10312 172 10342 137 10201 911 10063 163 10032 210 9644 394 7120 1112 6347 c 7015 1199 8738 527 9700 284 8324 164 10138 95 10219 66 10208 120 8742 137 10080 141 9946 253 9398 1248 7165 1302 g 847 1512 404 828 227 489 318 357 113 244 101 253 137 293 326 397 152 436 204 568 450 1469 1206 1916 t 1369 941 777 449 448 269 1521 203 334 145 304 135 314 182 817 199 401 187 436 331 554 959 1313 1231
dyads_m1_shift0 (dyads_m1)				; oligos_7nt_mkv5_m5 versus dyads_m1; m=24/32; ncol2=24; w=-10; offset=-10; strand=D; shift=0; score=0.497652; cacACACACACACACACACACaCa ; cor=; Ncor= a 1280 5769 844 7575 308 7972 230 8278 169 7073 107 8415 88 8278 110 8388 123 8164 136 7861 286 5710 750 5400 c 5685 1069 5772 362 7980 179 8198 99 8271 134 8405 42 8404 46 8335 47 8296 96 8254 172 7832 540 6084 961 g 699 1153 394 550 174 422 109 278 112 1314 70 223 63 347 85 242 103 335 110 452 286 1040 923 1428 t 1127 800 1781 304 329 218 254 136 239 270 209 111 236 120 261 114 269 196 291 306 387 1501 1034 1002
positions_7nt_m3_rc_shift6 (positions_7nt_m3_rc)				; oligos_7nt_mkv5_m5 versus positions_7nt_m3_rc; m=25/32; ncol2=24; w=-4; offset=-4; strand=R; shift=6; score=0.495603; ------cacACACACACACACACA ; cor=; Ncor= a 0 0 0 0 0 0 1294 5767 832 7636 317 7993 229 8271 174 6990 121 8389 83 8363 89 8367 125 8096 c 0 0 0 0 0 0 5670 1038 5777 345 7963 167 8182 82 8240 124 8319 47 8415 43 8363 64 8227 139 g 0 0 0 0 0 0 700 1201 385 498 167 429 102 276 111 1392 87 232 55 271 77 215 128 358 t 0 0 0 0 0 0 1109 767 1779 294 326 184 260 144 248 267 246 105 220 96 244 127 293 180
positions_6nt_m2_shift0 (positions_6nt_m2)				; oligos_7nt_mkv5_m5 versus positions_6nt_m2; m=26/32; ncol2=24; w=-10; offset=-10; strand=D; shift=0; score=0.490066; caCACACACACACACACACACaca ; cor=; Ncor= a 1674 6587 1131 8301 728 8673 1754 9648 192 9938 120 9903 103 9751 355 9734 123 9734 183 9180 1248 6526 1151 5953 c 6338 1249 7674 663 8487 566 7492 189 9728 64 9816 60 9760 85 7946 117 9678 107 9532 313 7183 1249 6633 1360 g 900 1442 542 747 409 633 322 260 80 181 87 181 102 255 304 270 128 272 201 422 814 1449 1211 1827 t 1339 973 904 540 627 379 683 154 251 68 228 107 286 160 1646 130 322 138 335 336 1006 1027 1256 1111
positions_6nt_m4_shift1 (positions_6nt_m4)				; oligos_7nt_mkv5_m5 versus positions_6nt_m4; m=27/32; ncol2=24; w=-9; offset=-9; strand=D; shift=1; score=0.490035; -acrCACACACACACACACACACa ; cor=; Ncor= a 0 4036 756 3843 178 5863 121 6020 118 6075 260 6138 59 6174 74 6125 607 6064 93 6018 105 5737 392 4223 c 0 793 4330 425 5818 127 6019 77 6040 64 5055 58 6144 32 6086 66 5114 65 6014 80 5939 168 4643 642 g 0 917 462 1750 117 281 64 194 72 152 154 120 50 125 65 128 205 170 80 188 142 264 744 871 t 0 636 834 364 269 111 178 91 152 91 913 66 129 51 157 63 456 83 195 96 196 213 603 646
positions_6nt_m10_shift0 (positions_6nt_m10)				; oligos_7nt_mkv5_m5 versus positions_6nt_m10; m=28/32; ncol2=24; w=-10; offset=-10; strand=D; shift=0; score=0.485047; cacamACACACACACACACACACa ; cor=; Ncor= a 1644 4757 1897 5009 2242 7210 300 7698 172 7745 109 7783 278 7803 88 7859 105 7696 735 6872 368 6362 761 5158 c 4474 1435 4643 1675 4819 329 7423 106 7668 78 7720 72 6248 67 7756 40 7675 105 6383 333 6829 483 5653 875 g 852 984 678 841 352 346 99 206 69 169 74 142 186 140 66 130 90 164 335 518 375 755 756 1260 t 1108 902 860 553 665 193 256 68 169 86 175 81 1366 68 168 49 208 113 625 355 506 478 908 785
positions_6nt_m5_rc_shift1 (positions_6nt_m5_rc)				; oligos_7nt_mkv5_m5 versus positions_6nt_m5_rc; m=29/32; ncol2=24; w=-9; offset=-9; strand=R; shift=1; score=0.48472; -acaCACACACACACACACACACa ; cor=; Ncor= a 0 6654 1486 7374 578 9705 350 10107 293 10277 513 10438 142 10419 180 10361 191 8355 203 9903 265 9496 388 7427 c 0 1580 7325 1033 9570 367 10110 223 10240 160 8894 130 10505 65 10428 79 10215 222 10142 179 10093 267 9651 910 g 0 1562 812 1478 309 606 171 435 164 401 309 324 125 432 134 435 217 2098 215 703 233 910 484 1705 t 0 1278 1451 1189 617 396 443 309 377 236 1358 182 302 158 332 199 451 399 514 289 483 401 551 1032
positions_7nt_m6_shift3 (positions_7nt_m6)				; oligos_7nt_mkv5_m5 versus positions_7nt_m6; m=30/32; ncol2=24; w=-7; offset=-7; strand=D; shift=3; score=0.484316; ---acaCACACACACACACACACA ; cor=; Ncor= a 0 0 0 6927 1517 7621 592 9961 331 10438 252 10662 199 10658 420 10691 123 10545 215 10328 240 7880 301 9461 c 0 0 0 1570 7570 1019 9778 336 10366 168 10549 121 10610 117 9276 120 10687 78 10526 137 10279 354 10096 365 g 0 0 0 1571 809 1492 291 604 175 451 140 309 141 351 263 329 144 527 151 577 270 2529 308 984 t 0 0 0 1250 1422 1186 657 417 446 261 377 226 368 192 1359 178 364 168 426 276 529 555 613 508
positions_7nt_m10_shift3 (positions_7nt_m10)				; oligos_7nt_mkv5_m5 versus positions_7nt_m10; m=31/32; ncol2=24; w=-7; offset=-7; strand=D; shift=3; score=0.483291; ---acACACACACACACACACACA ; cor=; Ncor= a 0 0 0 6553 1564 7828 1025 8021 374 10121 241 10399 185 10560 411 10575 122 10494 190 10307 197 7962 261 9574 c 0 0 0 1631 7310 1069 8605 752 10095 213 10395 139 10487 100 8961 121 10565 63 10453 108 10266 280 10121 279 g 0 0 0 1602 838 1290 509 1255 212 481 115 332 113 305 269 277 115 434 127 485 206 2409 230 861 t 0 0 0 1333 1407 932 980 1091 438 304 368 249 334 154 1478 146 317 128 349 219 450 468 507 405
positions_6nt_m6_shift1 (positions_6nt_m6)				; oligos_7nt_mkv5_m5 versus positions_6nt_m6; m=32/32; ncol2=24; w=-9; offset=-9; strand=D; shift=1; score=0.482922; -acamACACACACACACACACACa ; cor=; Ncor= a 0 5708 1651 5995 2436 8473 376 9082 243 9229 156 9248 329 9272 104 9355 124 9204 788 8224 410 7827 584 6297 c 0 1600 5883 1781 5914 453 8796 157 9073 88 9166 92 7597 98 9244 51 9116 119 7685 354 8244 467 7757 924 g 0 1261 919 1147 438 454 144 302 100 223 102 209 236 192 86 182 131 210 410 690 391 871 605 1492 t 0 1094 1210 740 875 283 347 122 247 123 239 114 1501 101 229 75 292 130 780 395 618 498 717 950