compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DrosophilaTFs/DrosophilaTFs_2015-11-06.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_vs_db/peak-motifs_motifs_vs_db_DrosophilaTFs.tab Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 $RSAT/public_html/motif_databases/DrosophilaTFs/DrosophilaTFs_2015-11-06.tf Output files match_table_html $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_vs_db/peak-motifs_motifs_vs_db_DrosophilaTFs.html match_table_txt $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_vs_db/peak-motifs_motifs_vs_db_DrosophilaTFs.tab html_index $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_vs_db/peak-motifs_motifs_vs_db_DrosophilaTFs_index.html alignments_1ton $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_vs_db/peak-motifs_motifs_vs_db_DrosophilaTFs_alignments_1ton.tab prefix $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_vs_db/peak-motifs_motifs_vs_db_DrosophilaTFs alignments_1ton_html $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_vs_db/peak-motifs_motifs_vs_db_DrosophilaTFs_alignments_1ton.html Matrices file1 50 matrices $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.204716_2025-11-26.204716_g9CRAo/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 1 11 1444 file1 2 16 2496 file1 3 12 1412 file1 4 11 1588 file1 5 16 1697 file1 6 12 1239 file1 7 10 857 file1 8 10 1533 file1 9 11 1402 file1 10 12 1939 file1 11 15 3805 ... 40 more matrices file2 61 matrices $RSAT/public_html/motif_databases/DrosophilaTFs/DrosophilaTFs_2015-11-06.tf file2 1 14 100 file2 2 12 100 file2 3 6 1 file2 4 9 100 file2 5 12 100 file2 6 8 1 file2 7 15 100 file2 8 17 100 file2 9 6 1 file2 10 10 1 file2 11 11 100 ... 51 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6nt_mkv4_m6 | 4988_srp_DrosophilaTF_1.1_ | oligos_6nt_mkv4_m6 | 4988_srp_DrosophilaTF_1.1_ | 0.912 | 0.760 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | R | 0 |
| dyads_m3 | 4933_Adf1_DrosophilaTF_1.1_ | dyads_m3 | 4933_Adf1_DrosophilaTF_1.1_ | 0.823 | 0.706 | 14 | 12 | 12 | 14 | 0.8571 | 0.8571 | 1.0000 | R | 0 |
| oligos_6nt_mkv4_m6 | 4978_pnr_DrosophilaTF_1.1_ | oligos_6nt_mkv4_m6 | 4978_pnr_DrosophilaTF_1.1_ | 0.938 | 0.625 | 12 | 18 | 12 | 18 | 0.6667 | 1.0000 | 0.6667 | R | -3 |
| oligos_7nt_mkv5_m6 | 4933_Adf1_DrosophilaTF_1.1_ | oligos_7nt_mkv5_m6 | 4933_Adf1_DrosophilaTF_1.1_ | 0.806 | 0.569 | 17 | 12 | 12 | 17 | 0.7059 | 0.7059 | 1.0000 | D | 4 |
| oligos_7nt_mkv5_m2 | 4936_Dip3_DrosophilaTF_1.1_ | oligos_7nt_mkv5_m2 | 4936_Dip3_DrosophilaTF_1.1_ | 0.816 | 0.524 | 11 | 12 | 9 | 14 | 0.6429 | 0.8182 | 0.7500 | D | 2 |
| oligos_6nt_mkv4_m4 | 4954_br-Z4_DrosophilaTF_1.1_ | oligos_6nt_mkv4_m4 | 4954_br-Z4_DrosophilaTF_1.1_ | 0.812 | 0.517 | 11 | 7 | 7 | 11 | 0.6364 | 0.6364 | 1.0000 | D | 0 |
| oligos_6nt_mkv4_m8 | 4953_br-Z3_DrosophilaTF_1.1_ | oligos_6nt_mkv4_m8 | 4953_br-Z3_DrosophilaTF_1.1_ | 0.876 | 0.511 | 10 | 9 | 7 | 12 | 0.5833 | 0.7000 | 0.7778 | D | 3 |
| dyads_m6 | 4983_sd_DrosophilaTF_1.1_ | dyads_m6 | 4983_sd_DrosophilaTF_1.1_ | 0.765 | 0.437 | 13 | 9 | 8 | 14 | 0.5714 | 0.6154 | 0.8889 | R | 5 |
| oligos_6nt_mkv4_m8 | 4958_croc_DrosophilaTF_1.1_ | oligos_6nt_mkv4_m8 | 4958_croc_DrosophilaTF_1.1_ | 0.704 | 0.422 | 10 | 6 | 6 | 10 | 0.6000 | 0.6000 | 1.0000 | D | 1 |
| oligos_6nt_mkv4_m1 | 4934_Aef1_DrosophilaTF_1.1_ | oligos_6nt_mkv4_m1 | 4934_Aef1_DrosophilaTF_1.1_ | 0.762 | 0.415 | 11 | 6 | 6 | 11 | 0.5455 | 0.5455 | 1.0000 | D | 3 |
| oligos_6nt_mkv4_m6 | 4945_TFAM_DrosophilaTF_1.1_ | oligos_6nt_mkv4_m6 | 4945_TFAM_DrosophilaTF_1.1_ | 0.989 | 0.412 | 12 | 5 | 5 | 12 | 0.4167 | 0.4167 | 1.0000 | D | 3 |
Host name rsat Job started 2025-11-26.210052 Job done 2025-11-26.210058 Seconds 2.44 user 2.44 system 0.21 cuser 2.7 ; csystem 0.53