One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/dyads_m10/peak-motifs_dyads_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/dyads_m10/peak-motifs_dyads_m10_vs_db_FlyFactorSurvey
One-to-n matrix alignment; reference matrix: dyads_m10_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m10_shift0 (dyads_m10) |
 |
|
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; dyads_m10; m=0 (reference); ncol1=18; shift=0; ncol=18; ACACACACACACACrCAC
; Alignment reference
a 7238 1045 9369 539 9735 122 9879 128 9866 92 9777 133 9544 141 6688 222 6989 910
c 1135 7513 282 7314 129 9753 75 9760 58 9807 42 9764 113 9671 320 9327 744 7303
g 1101 600 342 286 208 86 171 64 179 69 269 87 355 180 2725 284 1578 877
t 739 1055 220 2074 141 252 88 261 110 245 125 229 201 221 480 380 902 1123
|
| klu_SANGER_10_FBgn0013469_rc_shift6 (klu_SANGER_10_FBgn0013469_rc) |
 |
|
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; dyads_m10 versus klu_SANGER_10_FBgn0013469_rc; m=1/1; ncol2=11; w=0; offset=6; strand=R; shift=6; score=0.463069; ------mCACCCmCrCa-
; cor=; Ncor=
a 0 0 0 0 0 0 7 0 18 0 0 0 13 0 9 0 12 0
c 0 0 0 0 0 0 11 20 0 20 20 19 7 20 0 16 2 0
g 0 0 0 0 0 0 2 0 0 0 0 0 0 0 10 0 2 0
t 0 0 0 0 0 0 0 0 2 0 0 1 0 0 1 3 2 0
|