RSAT - compare-matrices result

Analysis: result (26/11/2025 21:07)

Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/dyads_m3/peak-motifs_dyads_m3_vs_db_FlyFactorSurvey

Input files

Type	File
file1	peak-motifs_dyads_m3.tf
file2	../../../../../../../../../motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf

Output files

Type	File
match_table_txt	peak-motifs_dyads_m3_vs_db_FlyFactorSurvey.tab
match_table_html	peak-motifs_dyads_m3_vs_db_FlyFactorSurvey.html
alignments_1ton	peak-motifs_dyads_m3_vs_db_FlyFactorSurvey_alignments_1ton.tab
alignments_1ton_html	peak-motifs_dyads_m3_vs_db_FlyFactorSurvey_alignments_1ton.html

Directories

Type	Directory
output	.
aligned_logos	peak-motifs_dyads_m3_vs_db_FlyFactorSurvey_aligned_logos