One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/dyads_m4/peak-motifs_dyads_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DMMPMM_drosophila/dmmpmm_PCM.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/dyads_m4/peak-motifs_dyads_m4_vs_db_DMMPMM_drosophila
One-to-n matrix alignment; reference matrix: dyads_m4_shift0 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m4_shift0 (dyads_m4) |
 |
|
|
; dyads_m4; m=0 (reference); ncol1=17; shift=0; ncol=17; GaGAGAGAGAGAGAGaG
; Alignment reference
a 1146 5072 674 6098 581 6400 516 6520 527 6554 534 6417 568 6169 757 5112 1251
c 601 904 326 610 226 569 166 521 148 520 134 571 200 633 274 1020 526
g 5388 771 6362 387 6628 275 6791 285 6812 285 6823 311 6662 380 6323 751 5329
t 505 893 278 545 205 396 167 314 153 281 149 341 210 458 286 757 534
|
| Trl_rc_shift3 (Trl_rc) |
 |
|
|
; dyads_m4 versus Trl_rc; m=1/1; ncol2=13; w=0; offset=3; strand=R; shift=3; score=0.641698; ---agaGaGAGmrmaA-
; cor=; Ncor=
a 0 0 0 42 17 46 7 50 11 62 0 40 26 30 41 57 0
c 0 0 0 14 9 6 1 9 8 11 5 27 10 24 13 0 0
g 0 0 0 3 47 16 56 12 56 0 72 3 41 19 8 10 0
t 0 0 0 18 4 9 13 6 2 4 0 7 0 4 15 10 0
|