One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/dyads_m7/peak-motifs_dyads_m7.tf -format2 tf -file2 $RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/dyads_m7/peak-motifs_dyads_m7_vs_db_FlyFactorSurvey
One-to-n matrix alignment; reference matrix: dyads_m7_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m7_shift0 (dyads_m7) |
 |
|
|
; dyads_m7; m=0 (reference); ncol1=14; shift=0; ncol=14; acAyACACACAyac
; Alignment reference
a 1763 381 2620 124 2741 84 2776 70 2703 73 2647 156 1615 405
c 455 1780 115 863 58 2638 31 2656 75 2647 89 786 455 1694
g 374 287 105 76 65 58 59 35 66 71 78 168 440 391
t 319 463 71 1848 47 131 45 150 67 120 97 1801 401 421
|
| CG16778_SANGER_5_FBgn0003715_shift5 (CG16778_SANGER_5_FBgn0003715) |
 |
|
|
; dyads_m7 versus CG16778_SANGER_5_FBgn0003715; m=1/2; ncol2=8; w=0; offset=5; strand=D; shift=5; score=0.472109; -----CACAyAYG-
; cor=; Ncor=
a 0 0 0 0 0 0 18 0 20 0 17 0 0 0
c 0 0 0 0 0 15 1 20 0 9 0 6 1 0
g 0 0 0 0 0 2 0 0 0 0 3 0 18 0
t 0 0 0 0 0 1 0 0 0 11 0 14 1 0
|
| CG5953_SANGER_5_FBgn0032587_shift4 (CG5953_SANGER_5_FBgn0032587) |
 |
|
|
; dyads_m7 versus CG5953_SANGER_5_FBgn0032587; m=2/2; ncol2=8; w=0; offset=4; strand=D; shift=4; score=0.450765; ----aCAAACAy--
; cor=; Ncor=
a 0 0 0 0 10 0 16 16 16 0 16 1 0 0
c 0 0 0 0 3 16 0 0 0 16 0 5 0 0
g 0 0 0 0 0 0 0 0 0 0 0 0 0 0
t 0 0 0 0 3 0 0 0 0 0 0 10 0 0
|