One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/dyads_m9/peak-motifs_dyads_m9.tf -format2 tf -file2 $RSAT/public_html/motif_databases/DrosophilaTFs/DrosophilaTFs_2015-11-06.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/dyads_m9/peak-motifs_dyads_m9_vs_db_DrosophilaTFs
One-to-n matrix alignment; reference matrix: dyads_m9_shift1 ; 2 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| dyads_m9_shift1 (dyads_m9) |
 |
|
|
; dyads_m9; m=0 (reference); ncol1=13; shift=1; ncol=14; -acATACACACmca
; Alignment reference
a 0 1425 347 2251 103 2337 38 2277 26 2263 37 767 520 1082
c 0 426 1452 85 532 46 2255 72 2298 85 2267 1376 1114 522
g 0 318 252 52 45 26 51 36 34 26 65 149 430 440
t 0 266 384 47 1755 26 91 50 77 61 66 143 371 391
|
| 4935_Cf2_DrosophilaTF_1.1__rc_shift0 (4935_Cf2_DrosophilaTF_1.1__rc) |
 |
|
|
; dyads_m9 versus 4935_Cf2_DrosophilaTF_1.1__rc; m=1/1; ncol2=9; w=-1; offset=-1; strand=R; shift=0; score=0.405587; yAyATATAy-----
; cor=; Ncor=
a 5 83 5 95 0 88 0 94 1 0 0 0 0 0
c 26 2 41 0 4 4 6 0 51 0 0 0 0 0
g 6 13 3 4 2 8 0 6 15 0 0 0 0 0
t 63 2 51 1 94 0 94 0 33 0 0 0 0 0
|