/var/www/html/rsat/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_6nt_mkv4_m3/peak-motifs_oligos_6nt_mkv4_m3_vs_db_FlyFactorSurvey.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_6nt_mkv4_m3/peak-motifs_oligos_6nt_mkv4_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_6nt_mkv4_m3/peak-motifs_oligos_6nt_mkv4_m3_vs_db_FlyFactorSurvey
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_6nt_mkv4_m3/peak-motifs_oligos_6nt_mkv4_m3.tf
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_6nt_mkv4_m3/peak-motifs_oligos_6nt_mkv4_m3_vs_db_FlyFactorSurvey
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_6nt_mkv4_m3/peak-motifs_oligos_6nt_mkv4_m3_vs_db_FlyFactorSurvey_alignments_1ton.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_6nt_mkv4_m3/peak-motifs_oligos_6nt_mkv4_m3_vs_db_FlyFactorSurvey.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_6nt_mkv4_m3/peak-motifs_oligos_6nt_mkv4_m3_vs_db_FlyFactorSurvey_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_6nt_mkv4_m3/peak-motifs_oligos_6nt_mkv4_m3_vs_db_FlyFactorSurvey_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_6nt_mkv4_m3/peak-motifs_oligos_6nt_mkv4_m3_vs_db_FlyFactorSurvey.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_6nt_mkv4_m3/peak-motifs_oligos_6nt_mkv4_m3.tf
		file1	1	12	1412
	file2	652 matrices	$RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf
		file2		1		21		20
		file2		2		26		461
		file2		3		8		37
		file2		4		8		7
		file2		5		7		18
		file2		6		8		662
		file2		7		9		21
		file2		8		8		2704
		file2		9		8		19
		file2		10		8		19
		file2		11		7		23
		...	642 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv4_m3 Her_SANGER_5_FBgn0030899 oligos_6nt_mkv4_m3 Her_SANGER_5_FBgn0030899 0.899 0.674 12 9 9 12 0.7500 0.7500 1.0000 D 3
oligos_6nt_mkv4_m3 hth_SOLEXA_2_FBgn0001235 oligos_6nt_mkv4_m3 hth_SOLEXA_2_FBgn0001235 0.943 0.629 12 8 8 12 0.6667 0.6667 1.0000 R 2
oligos_6nt_mkv4_m3 Exd_Cell_FBgn0000611 oligos_6nt_mkv4_m3 Exd_Cell_FBgn0000611 0.936 0.624 12 8 8 12 0.6667 0.6667 1.0000 R 3
oligos_6nt_mkv4_m3 Exd_SOLEXA_FBgn0000611 oligos_6nt_mkv4_m3 Exd_SOLEXA_FBgn0000611 0.928 0.619 12 8 8 12 0.6667 0.6667 1.0000 R 3
oligos_6nt_mkv4_m3 Achi_Cell_FBgn0033749 oligos_6nt_mkv4_m3 Achi_Cell_FBgn0033749 0.990 0.577 12 7 7 12 0.5833 0.5833 1.0000 R 3
oligos_6nt_mkv4_m3 disco_SOLEXA_5_FBgn0000459 oligos_6nt_mkv4_m3 disco_SOLEXA_5_FBgn0000459 0.726 0.571 12 13 11 14 0.7857 0.9167 0.8462 D -2
oligos_6nt_mkv4_m3 CG3407_SANGER_2.5_FBgn0031573 oligos_6nt_mkv4_m3 CG3407_SANGER_2.5_FBgn0031573 0.758 0.568 12 9 9 12 0.7500 0.7500 1.0000 D 2
oligos_6nt_mkv4_m3 disco-r-F1-2_SOLEXA_FBgn0042650 oligos_6nt_mkv4_m3 disco-r-F1-2_SOLEXA_FBgn0042650 0.706 0.565 12 15 12 15 0.8000 1.0000 0.8000 R -1
oligos_6nt_mkv4_m3 CG11617_Cell_FBgn0031232 oligos_6nt_mkv4_m3 CG11617_Cell_FBgn0031232 0.847 0.565 12 8 8 12 0.6667 0.6667 1.0000 R 3
oligos_6nt_mkv4_m3 CG11617_SOLEXA_FBgn0031232 oligos_6nt_mkv4_m3 CG11617_SOLEXA_FBgn0031232 0.826 0.551 12 8 8 12 0.6667 0.6667 1.0000 R 3
oligos_6nt_mkv4_m3 Six4_SOLEXA_FBgn0027364 oligos_6nt_mkv4_m3 Six4_SOLEXA_FBgn0027364 0.810 0.540 12 8 8 12 0.6667 0.6667 1.0000 R 3
oligos_6nt_mkv4_m3 exd_SOLEXA_2_FBgn0000611 oligos_6nt_mkv4_m3 exd_SOLEXA_2_FBgn0000611 0.764 0.509 12 8 8 12 0.6667 0.6667 1.0000 R 2
oligos_6nt_mkv4_m3 Fer3_da_SANGER_5_FBgn0037937 oligos_6nt_mkv4_m3 Fer3_da_SANGER_5_FBgn0037937 0.721 0.499 12 10 9 13 0.6923 0.7500 0.9000 D -1
oligos_6nt_mkv4_m3 Fer3_da_SANGER_5_FBgn0000413 oligos_6nt_mkv4_m3 Fer3_da_SANGER_5_FBgn0000413 0.721 0.499 12 10 9 13 0.6923 0.7500 0.9000 D -1
oligos_6nt_mkv4_m3 Vis_SOLEXA_FBgn0033748 oligos_6nt_mkv4_m3 Vis_SOLEXA_FBgn0033748 0.993 0.496 12 6 6 12 0.5000 0.5000 1.0000 R 3
oligos_6nt_mkv4_m3 Achi_SOLEXA_FBgn0033749 oligos_6nt_mkv4_m3 Achi_SOLEXA_FBgn0033749 0.989 0.494 12 6 6 12 0.5000 0.5000 1.0000 R 3
oligos_6nt_mkv4_m3 ems_FlyReg_FBgn0000576 oligos_6nt_mkv4_m3 ems_FlyReg_FBgn0000576 0.736 0.490 12 8 8 12 0.6667 0.6667 1.0000 R 3
oligos_6nt_mkv4_m3 Hth_SOLEXA_FBgn0001235 oligos_6nt_mkv4_m3 Hth_SOLEXA_FBgn0001235 0.961 0.481 12 6 6 12 0.5000 0.5000 1.0000 R 3
oligos_6nt_mkv4_m3 Caup_Cell_FBgn0015919 oligos_6nt_mkv4_m3 Caup_Cell_FBgn0015919 0.709 0.473 12 8 8 12 0.6667 0.6667 1.0000 R 3
oligos_6nt_mkv4_m3 So_SOLEXA_FBgn0003460 oligos_6nt_mkv4_m3 So_SOLEXA_FBgn0003460 0.707 0.471 12 8 8 12 0.6667 0.6667 1.0000 R 3
oligos_6nt_mkv4_m3 HLHmgamma_SANGER_5_2_FBgn0002735 oligos_6nt_mkv4_m3 HLHmgamma_SANGER_5_2_FBgn0002735 0.799 0.466 12 7 7 12 0.5833 0.5833 1.0000 D 3
oligos_6nt_mkv4_m3 tap_da_SANGER_5_2_FBgn0015550 oligos_6nt_mkv4_m3 tap_da_SANGER_5_2_FBgn0015550 0.773 0.442 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_6nt_mkv4_m3 tap_da_SANGER_5_2_FBgn0000413 oligos_6nt_mkv4_m3 tap_da_SANGER_5_2_FBgn0000413 0.773 0.442 12 10 8 14 0.5714 0.6667 0.8000 D -2
oligos_6nt_mkv4_m3 Vis_Cell_FBgn0033748 oligos_6nt_mkv4_m3 Vis_Cell_FBgn0033748 0.999 0.416 12 5 5 12 0.4167 0.4167 1.0000 R 3
oligos_6nt_mkv4_m3 Hth_Cell_FBgn0001235 oligos_6nt_mkv4_m3 Hth_Cell_FBgn0001235 0.991 0.413 12 5 5 12 0.4167 0.4167 1.0000 R 3
oligos_6nt_mkv4_m3 Fer1_da_SANGER_10_FBgn0000413 oligos_6nt_mkv4_m3 Fer1_da_SANGER_10_FBgn0000413 0.764 0.407 12 11 8 15 0.5333 0.6667 0.7273 D -3
oligos_6nt_mkv4_m3 Fer1_da_SANGER_10_FBgn0037475 oligos_6nt_mkv4_m3 Fer1_da_SANGER_10_FBgn0037475 0.764 0.407 12 11 8 15 0.5333 0.6667 0.7273 D -3
oligos_6nt_mkv4_m3 nau_da_SANGER_5_FBgn0002922 oligos_6nt_mkv4_m3 nau_da_SANGER_5_FBgn0002922 0.747 0.402 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_6nt_mkv4_m3 nau_da_SANGER_5_FBgn0000413 oligos_6nt_mkv4_m3 nau_da_SANGER_5_FBgn0000413 0.747 0.402 12 8 7 13 0.5385 0.5833 0.8750 D -1 
 Host name	rsat
 Job started	2025-11-26.210648
 Job done	2025-11-26.210653
 Seconds	0.49
	user	0.49
	system	0.2
	cuser	4.06
;	csystem	0.67