One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_6nt_mkv4_m3/peak-motifs_oligos_6nt_mkv4_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/FlyFactorSurvey/PWM_FlyFactorSurvey_2016.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/11/26/peak-motifs.2025-11-26.205219_2025-11-26.205219_vuDZlG/results/discovered_motifs/oligos_6nt_mkv4_m3/peak-motifs_oligos_6nt_mkv4_m3_vs_db_FlyFactorSurvey

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv4_m3_shift3 ; 30 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv4_m3_shift3 (oligos_6nt_mkv4_m3)
; oligos_6nt_mkv4_m3; m=0 (reference); ncol1=12; shift=3; ncol=15; ---mrCTGTCAaamg ; Alignment reference a 0 0 0 526 362 41 28 74 16 39 1314 942 891 393 301 c 0 0 0 353 229 1319 34 50 45 1321 36 139 210 434 341 g 0 0 0 252 522 20 27 1237 28 21 34 168 140 278 427 t 0 0 0 281 299 32 1323 51 1323 31 28 163 171 307 343

Her_SANGER_5_FBgn0030899_shift6 (Her_SANGER_5_FBgn0030899)
; oligos_6nt_mkv4_m3 versus Her_SANGER_5_FBgn0030899; m=1/29; ncol2=9; w=0; offset=3; strand=D; shift=6; score=0.674088; ------wGTCAAvmv ; cor=; Ncor= a 0 0 0 0 0 0 5 0 0 1 18 18 5 5 5 c 0 0 0 0 0 0 0 0 0 18 1 0 6 11 8 g 0 0 0 0 0 0 2 17 1 0 0 1 7 0 6 t 0 0 0 0 0 0 12 2 18 0 0 0 1 3 0

hth_SOLEXA_2_FBgn0001235_rc_shift5 (hth_SOLEXA_2_FBgn0001235_rc)
; oligos_6nt_mkv4_m3 versus hth_SOLEXA_2_FBgn0001235_rc; m=2/29; ncol2=8; w=0; offset=2; strand=R; shift=5; score=0.628894; -----cTGTCAaa-- ; cor=; Ncor= a 0 0 0 0 0 322 13 22 0 48 2585 1115 951 0 0 c 0 0 0 0 0 783 291 0 33 2681 25 527 589 0 0 g 0 0 0 0 0 172 40 2621 0 0 69 459 586 0 0 t 0 0 0 0 0 216 2358 86 2696 0 50 618 572 0 0

Exd_Cell_FBgn0000611_rc_shift6 (Exd_Cell_FBgn0000611_rc)
; oligos_6nt_mkv4_m3 versus Exd_Cell_FBgn0000611_rc; m=3/29; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.623867; ------yRTCAAAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 5 0 0 17 17 14 5 0 c 0 0 0 0 0 0 6 0 0 17 0 0 2 4 0 g 0 0 0 0 0 0 0 12 0 0 0 0 0 4 0 t 0 0 0 0 0 0 11 0 17 0 0 0 1 4 0

Exd_SOLEXA_FBgn0000611_rc_shift6 (Exd_SOLEXA_FBgn0000611_rc)
; oligos_6nt_mkv4_m3 versus Exd_SOLEXA_FBgn0000611_rc; m=4/29; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.618812; ------yrTCAaaw- ; cor=; Ncor= a 0 0 0 0 0 0 77 323 0 0 883 541 408 266 0 c 0 0 0 0 0 0 259 0 0 883 0 168 143 207 0 g 0 0 0 0 0 0 26 505 0 0 0 40 172 152 0 t 0 0 0 0 0 0 521 55 883 0 0 134 160 258 0

Achi_Cell_FBgn0033749_rc_shift6 (Achi_Cell_FBgn0033749_rc)
; oligos_6nt_mkv4_m3 versus Achi_Cell_FBgn0033749_rc; m=5/29; ncol2=7; w=0; offset=3; strand=R; shift=6; score=0.577495; ------TGTCAwa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1 0 0 23 12 15 0 0 c 0 0 0 0 0 0 0 0 0 23 0 1 1 0 0 g 0 0 0 0 0 0 0 22 0 0 0 4 3 0 0 t 0 0 0 0 0 0 23 0 23 0 0 6 4 0 0

disco_SOLEXA_5_FBgn0000459_shift1 (disco_SOLEXA_5_FBgn0000459)
; oligos_6nt_mkv4_m3 versus disco_SOLEXA_5_FBgn0000459; m=6/29; ncol2=13; w=-2; offset=-2; strand=D; shift=1; score=0.570721; -aawwkTGTCACCy- ; cor=; Ncor= a 0 140 161 275 258 127 0 0 0 6 566 119 137 126 0 c 0 82 84 61 32 48 2 0 11 563 0 455 422 180 0 g 0 60 92 82 129 185 2 552 0 0 11 0 10 63 0 t 0 51 98 163 162 221 577 29 570 12 4 7 12 212 0

CG3407_SANGER_2.5_FBgn0031573_shift5 (CG3407_SANGER_2.5_FBgn0031573)
; oligos_6nt_mkv4_m3 versus CG3407_SANGER_2.5_FBgn0031573; m=7/29; ncol2=9; w=0; offset=2; strand=D; shift=5; score=0.568315; -----awGTCAAsm- ; cor=; Ncor= a 0 0 0 0 0 11 7 0 0 0 17 16 2 6 0 c 0 0 0 0 0 4 3 1 0 17 0 0 8 9 0 g 0 0 0 0 0 0 0 16 0 0 0 1 6 0 0 t 0 0 0 0 0 2 7 0 17 0 0 0 1 2 0

disco-r-F1-2_SOLEXA_FBgn0042650_rc_shift2 (disco-r-F1-2_SOLEXA_FBgn0042650_rc)
; oligos_6nt_mkv4_m3 versus disco-r-F1-2_SOLEXA_FBgn0042650_rc; m=8/29; ncol2=15; w=-1; offset=-1; strand=R; shift=2; score=0.565092; --aaadTGTCACCmr ; cor=; Ncor= a 0 0 931 1344 1271 809 0 1 8 1 2464 461 468 825 814 c 0 0 555 328 179 229 8 0 4 2584 41 2085 2015 848 635 g 0 0 582 446 563 782 272 2584 139 0 78 0 61 346 692 t 0 0 515 467 571 764 2305 0 2434 0 1 40 38 564 444

CG11617_Cell_FBgn0031232_rc_shift6 (CG11617_Cell_FBgn0031232_rc)
; oligos_6nt_mkv4_m3 versus CG11617_Cell_FBgn0031232_rc; m=9/29; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.564713; ------TGTtAAAw- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 4 17 16 14 7 0 c 0 0 0 0 0 0 0 0 0 3 0 0 1 3 0 g 0 0 0 0 0 0 0 17 0 0 0 0 0 0 0 t 0 0 0 0 0 0 17 0 17 10 0 1 2 7 0

CG11617_SOLEXA_FBgn0031232_rc_shift6 (CG11617_SOLEXA_FBgn0031232_rc)
; oligos_6nt_mkv4_m3 versus CG11617_SOLEXA_FBgn0031232_rc; m=10/29; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.550904; ------TGTwAwaw- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 393 839 455 359 377 0 c 0 0 0 0 0 0 9 0 0 283 20 176 257 211 0 g 0 0 0 0 0 0 2 1152 0 0 167 176 262 201 0 t 0 0 0 0 0 0 1148 7 1159 483 133 352 281 370 0

Six4_SOLEXA_FBgn0027364_rc_shift6 (Six4_SOLEXA_FBgn0027364_rc)
; oligos_6nt_mkv4_m3 versus Six4_SOLEXA_FBgn0027364_rc; m=11/29; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.53967; ------TaTCAhww- ; cor=; Ncor= a 0 0 0 0 0 0 0 383 0 38 599 194 203 181 0 c 0 0 0 0 0 0 0 126 0 556 0 167 83 116 0 g 0 0 0 0 0 0 40 128 0 0 38 84 91 93 0 t 0 0 0 0 0 0 597 0 637 43 0 192 260 247 0

exd_SOLEXA_2_FBgn0000611_rc_shift5 (exd_SOLEXA_2_FBgn0000611_rc)
; oligos_6nt_mkv4_m3 versus exd_SOLEXA_2_FBgn0000611_rc; m=12/29; ncol2=8; w=0; offset=2; strand=R; shift=5; score=0.509125; -----wyrTCAaa-- ; cor=; Ncor= a 0 0 0 0 0 483 259 1228 0 0 2672 1314 1025 0 0 c 0 0 0 0 0 145 914 86 0 2672 0 598 458 0 0 g 0 0 0 0 0 91 14 1169 0 0 0 204 568 0 0 t 0 0 0 0 0 474 1470 189 2672 0 0 539 587 0 0

Fer3_da_SANGER_5_FBgn0037937_shift2 (Fer3_da_SANGER_5_FBgn0037937)
; oligos_6nt_mkv4_m3 versus Fer3_da_SANGER_5_FBgn0037937; m=13/29; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.499373; --CAbCTGTyaC--- ; cor=; Ncor= a 0 0 2 18 1 3 0 0 3 0 11 3 0 0 0 c 0 0 17 0 5 15 1 0 2 7 4 15 0 0 0 g 0 0 0 1 8 1 0 19 0 4 2 0 0 0 0 t 0 0 0 0 5 0 18 0 14 8 2 1 0 0 0

Fer3_da_SANGER_5_FBgn0000413_shift2 (Fer3_da_SANGER_5_FBgn0000413)
; oligos_6nt_mkv4_m3 versus Fer3_da_SANGER_5_FBgn0000413; m=14/29; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.499373; --CAbCTGTyaC--- ; cor=; Ncor= a 0 0 2 18 1 3 0 0 3 0 11 3 0 0 0 c 0 0 17 0 5 15 1 0 2 7 4 15 0 0 0 g 0 0 0 1 8 1 0 19 0 4 2 0 0 0 0 t 0 0 0 0 5 0 18 0 14 8 2 1 0 0 0

Vis_SOLEXA_FBgn0033748_rc_shift6 (Vis_SOLEXA_FBgn0033748_rc)
; oligos_6nt_mkv4_m3 versus Vis_SOLEXA_FBgn0033748_rc; m=15/29; ncol2=6; w=0; offset=3; strand=R; shift=6; score=0.496352; ------TGTCAa--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 13 354 199 0 0 0 c 0 0 0 0 0 0 36 0 0 341 0 34 0 0 0 g 0 0 0 0 0 0 0 354 0 0 0 53 0 0 0 t 0 0 0 0 0 0 318 0 354 0 0 68 0 0 0

Achi_SOLEXA_FBgn0033749_rc_shift6 (Achi_SOLEXA_FBgn0033749_rc)
; oligos_6nt_mkv4_m3 versus Achi_SOLEXA_FBgn0033749_rc; m=16/29; ncol2=6; w=0; offset=3; strand=R; shift=6; score=0.494328; ------TGTCAa--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 368 181 0 0 0 c 0 0 0 0 0 0 29 0 0 344 0 39 0 0 0 g 0 0 0 0 0 0 0 368 0 0 0 74 0 0 0 t 0 0 0 0 0 0 339 0 368 24 0 74 0 0 0

ems_FlyReg_FBgn0000576_rc_shift6 (ems_FlyReg_FBgn0000576_rc)
; oligos_6nt_mkv4_m3 versus ems_FlyReg_FBgn0000576_rc; m=17/29; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.490415; ------TsTmAThm- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1 3 0 1 2 0 c 0 0 0 0 0 0 0 1 0 2 0 0 1 1 0 g 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 t 0 0 0 0 0 0 3 0 3 0 0 3 1 0 0

Hth_SOLEXA_FBgn0001235_rc_shift6 (Hth_SOLEXA_FBgn0001235_rc)
; oligos_6nt_mkv4_m3 versus Hth_SOLEXA_FBgn0001235_rc; m=18/29; ncol2=6; w=0; offset=3; strand=R; shift=6; score=0.480716; ------TGTCAm--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 388 148 0 0 0 c 0 0 0 0 0 0 40 0 0 444 56 120 0 0 0 g 0 0 0 0 0 0 60 444 41 0 0 87 0 0 0 t 0 0 0 0 0 0 344 0 403 0 0 89 0 0 0

Caup_Cell_FBgn0015919_rc_shift6 (Caup_Cell_FBgn0015919_rc)
; oligos_6nt_mkv4_m3 versus Caup_Cell_FBgn0015919_rc; m=19/29; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.472683; ------TGTTawwg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 3 12 7 7 4 0 c 0 0 0 0 0 0 0 0 0 2 2 4 3 2 0 g 0 0 0 0 0 0 0 19 0 0 1 0 0 9 0 t 0 0 0 0 0 0 19 0 19 14 4 8 9 4 0

So_SOLEXA_FBgn0003460_rc_shift6 (So_SOLEXA_FBgn0003460_rc)
; oligos_6nt_mkv4_m3 versus So_SOLEXA_FBgn0003460_rc; m=20/29; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.471011; ------TATCAyww- ; cor=; Ncor= a 0 0 0 0 0 0 0 509 0 0 467 122 165 166 0 c 0 0 0 0 0 0 0 14 0 519 4 151 117 95 0 g 0 0 0 0 0 0 0 8 0 0 58 87 92 102 0 t 0 0 0 0 0 0 531 0 531 12 2 171 157 168 0

HLHmgamma_SANGER_5_2_FBgn0002735_shift6 (HLHmgamma_SANGER_5_2_FBgn0002735)
; oligos_6nt_mkv4_m3 versus HLHmgamma_SANGER_5_2_FBgn0002735; m=21/29; ncol2=7; w=0; offset=3; strand=D; shift=6; score=0.466095; ------wGTCAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 3 0 0 0 7 7 0 0 0 c 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 g 0 0 0 0 0 0 0 7 0 0 0 0 7 0 0 t 0 0 0 0 0 0 4 0 7 0 0 0 0 0 0

tap_da_SANGER_5_2_FBgn0015550_shift1 (tap_da_SANGER_5_2_FBgn0015550)
; oligos_6nt_mkv4_m3 versus tap_da_SANGER_5_2_FBgn0015550; m=22/29; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.441631; -SCAkATGTCA---- ; cor=; Ncor= a 0 0 0 13 1 11 0 0 0 0 10 0 0 0 0 c 0 9 12 0 3 3 0 0 0 11 0 0 0 0 0 g 0 3 0 1 5 0 0 14 1 1 3 0 0 0 0 t 0 0 0 0 5 0 14 0 13 2 1 0 0 0 0

tap_da_SANGER_5_2_FBgn0000413_shift1 (tap_da_SANGER_5_2_FBgn0000413)
; oligos_6nt_mkv4_m3 versus tap_da_SANGER_5_2_FBgn0000413; m=23/29; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.441631; -SCAkATGTCA---- ; cor=; Ncor= a 0 0 0 13 1 11 0 0 0 0 10 0 0 0 0 c 0 9 12 0 3 3 0 0 0 11 0 0 0 0 0 g 0 3 0 1 5 0 0 14 1 1 3 0 0 0 0 t 0 0 0 0 5 0 14 0 13 2 1 0 0 0 0

Vis_Cell_FBgn0033748_rc_shift6 (Vis_Cell_FBgn0033748_rc)
; oligos_6nt_mkv4_m3 versus Vis_Cell_FBgn0033748_rc; m=24/29; ncol2=5; w=0; offset=3; strand=R; shift=6; score=0.416374; ------TGTCA---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 22 0 0 0 0 c 0 0 0 0 0 0 0 0 0 22 0 0 0 0 0 g 0 0 0 0 0 0 0 22 0 0 0 0 0 0 0 t 0 0 0 0 0 0 22 0 22 0 0 0 0 0 0

Hth_Cell_FBgn0001235_rc_shift6 (Hth_Cell_FBgn0001235_rc)
; oligos_6nt_mkv4_m3 versus Hth_Cell_FBgn0001235_rc; m=25/29; ncol2=5; w=0; offset=3; strand=R; shift=6; score=0.412766; ------TGTCA---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 17 0 0 0 0 c 0 0 0 0 0 0 3 0 0 17 0 0 0 0 0 g 0 0 0 0 0 0 0 17 0 0 0 0 0 0 0 t 0 0 0 0 0 0 14 0 17 0 0 0 0 0 0

Fer1_da_SANGER_10_FBgn0000413_shift0 (Fer1_da_SANGER_10_FBgn0000413)
; oligos_6nt_mkv4_m3 versus Fer1_da_SANGER_10_FBgn0000413; m=26/29; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.407324; mvCAsmTGwCa---- ; cor=; Ncor= a 11 11 0 23 0 6 0 0 8 0 14 0 0 0 0 c 6 6 23 0 15 14 0 0 3 17 4 0 0 0 0 g 1 6 0 0 8 3 0 23 2 3 4 0 0 0 0 t 5 0 0 0 0 0 23 0 10 3 1 0 0 0 0

Fer1_da_SANGER_10_FBgn0037475_shift0 (Fer1_da_SANGER_10_FBgn0037475)
; oligos_6nt_mkv4_m3 versus Fer1_da_SANGER_10_FBgn0037475; m=27/29; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.407324; mvCAsmTGwCa---- ; cor=; Ncor= a 11 11 0 23 0 6 0 0 8 0 14 0 0 0 0 c 6 6 23 0 15 14 0 0 3 17 4 0 0 0 0 g 1 6 0 0 8 3 0 23 2 3 4 0 0 0 0 t 5 0 0 0 0 0 23 0 10 3 1 0 0 0 0

nau_da_SANGER_5_FBgn0002922_shift2 (nau_da_SANGER_5_FBgn0002922)
; oligos_6nt_mkv4_m3 versus nau_da_SANGER_5_FBgn0002922; m=28/29; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.402198; --CACCTGyy----- ; cor=; Ncor= a 0 0 0 22 0 0 0 0 0 1 0 0 0 0 0 c 0 0 16 0 22 22 0 0 9 14 0 0 0 0 0 g 0 0 1 0 0 0 0 22 0 1 0 0 0 0 0 t 0 0 0 0 0 0 22 0 13 6 0 0 0 0 0

nau_da_SANGER_5_FBgn0000413_shift2 (nau_da_SANGER_5_FBgn0000413)
; oligos_6nt_mkv4_m3 versus nau_da_SANGER_5_FBgn0000413; m=29/29; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.402198; --CACCTGyy----- ; cor=; Ncor= a 0 0 0 22 0 0 0 0 0 1 0 0 0 0 0 c 0 0 16 0 22 22 0 0 9 14 0 0 0 0 0 g 0 0 1 0 0 0 0 22 0 1 0 0 0 0 0 t 0 0 0 0 0 0 22 0 13 6 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv4_m3_shift3 (oligos_6nt_mkv4_m3)				; oligos_6nt_mkv4_m3; m=0 (reference); ncol1=12; shift=3; ncol=15; ---mrCTGTCAaamg ; Alignment reference a 0 0 0 526 362 41 28 74 16 39 1314 942 891 393 301 c 0 0 0 353 229 1319 34 50 45 1321 36 139 210 434 341 g 0 0 0 252 522 20 27 1237 28 21 34 168 140 278 427 t 0 0 0 281 299 32 1323 51 1323 31 28 163 171 307 343
Her_SANGER_5_FBgn0030899_shift6 (Her_SANGER_5_FBgn0030899)				; oligos_6nt_mkv4_m3 versus Her_SANGER_5_FBgn0030899; m=1/29; ncol2=9; w=0; offset=3; strand=D; shift=6; score=0.674088; ------wGTCAAvmv ; cor=; Ncor= a 0 0 0 0 0 0 5 0 0 1 18 18 5 5 5 c 0 0 0 0 0 0 0 0 0 18 1 0 6 11 8 g 0 0 0 0 0 0 2 17 1 0 0 1 7 0 6 t 0 0 0 0 0 0 12 2 18 0 0 0 1 3 0
hth_SOLEXA_2_FBgn0001235_rc_shift5 (hth_SOLEXA_2_FBgn0001235_rc)				; oligos_6nt_mkv4_m3 versus hth_SOLEXA_2_FBgn0001235_rc; m=2/29; ncol2=8; w=0; offset=2; strand=R; shift=5; score=0.628894; -----cTGTCAaa-- ; cor=; Ncor= a 0 0 0 0 0 322 13 22 0 48 2585 1115 951 0 0 c 0 0 0 0 0 783 291 0 33 2681 25 527 589 0 0 g 0 0 0 0 0 172 40 2621 0 0 69 459 586 0 0 t 0 0 0 0 0 216 2358 86 2696 0 50 618 572 0 0
Exd_Cell_FBgn0000611_rc_shift6 (Exd_Cell_FBgn0000611_rc)				; oligos_6nt_mkv4_m3 versus Exd_Cell_FBgn0000611_rc; m=3/29; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.623867; ------yRTCAAAa- ; cor=; Ncor= a 0 0 0 0 0 0 0 5 0 0 17 17 14 5 0 c 0 0 0 0 0 0 6 0 0 17 0 0 2 4 0 g 0 0 0 0 0 0 0 12 0 0 0 0 0 4 0 t 0 0 0 0 0 0 11 0 17 0 0 0 1 4 0
Exd_SOLEXA_FBgn0000611_rc_shift6 (Exd_SOLEXA_FBgn0000611_rc)				; oligos_6nt_mkv4_m3 versus Exd_SOLEXA_FBgn0000611_rc; m=4/29; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.618812; ------yrTCAaaw- ; cor=; Ncor= a 0 0 0 0 0 0 77 323 0 0 883 541 408 266 0 c 0 0 0 0 0 0 259 0 0 883 0 168 143 207 0 g 0 0 0 0 0 0 26 505 0 0 0 40 172 152 0 t 0 0 0 0 0 0 521 55 883 0 0 134 160 258 0
Achi_Cell_FBgn0033749_rc_shift6 (Achi_Cell_FBgn0033749_rc)				; oligos_6nt_mkv4_m3 versus Achi_Cell_FBgn0033749_rc; m=5/29; ncol2=7; w=0; offset=3; strand=R; shift=6; score=0.577495; ------TGTCAwa-- ; cor=; Ncor= a 0 0 0 0 0 0 0 1 0 0 23 12 15 0 0 c 0 0 0 0 0 0 0 0 0 23 0 1 1 0 0 g 0 0 0 0 0 0 0 22 0 0 0 4 3 0 0 t 0 0 0 0 0 0 23 0 23 0 0 6 4 0 0
disco_SOLEXA_5_FBgn0000459_shift1 (disco_SOLEXA_5_FBgn0000459)				; oligos_6nt_mkv4_m3 versus disco_SOLEXA_5_FBgn0000459; m=6/29; ncol2=13; w=-2; offset=-2; strand=D; shift=1; score=0.570721; -aawwkTGTCACCy- ; cor=; Ncor= a 0 140 161 275 258 127 0 0 0 6 566 119 137 126 0 c 0 82 84 61 32 48 2 0 11 563 0 455 422 180 0 g 0 60 92 82 129 185 2 552 0 0 11 0 10 63 0 t 0 51 98 163 162 221 577 29 570 12 4 7 12 212 0
CG3407_SANGER_2.5_FBgn0031573_shift5 (CG3407_SANGER_2.5_FBgn0031573)				; oligos_6nt_mkv4_m3 versus CG3407_SANGER_2.5_FBgn0031573; m=7/29; ncol2=9; w=0; offset=2; strand=D; shift=5; score=0.568315; -----awGTCAAsm- ; cor=; Ncor= a 0 0 0 0 0 11 7 0 0 0 17 16 2 6 0 c 0 0 0 0 0 4 3 1 0 17 0 0 8 9 0 g 0 0 0 0 0 0 0 16 0 0 0 1 6 0 0 t 0 0 0 0 0 2 7 0 17 0 0 0 1 2 0
disco-r-F1-2_SOLEXA_FBgn0042650_rc_shift2 (disco-r-F1-2_SOLEXA_FBgn0042650_rc)				; oligos_6nt_mkv4_m3 versus disco-r-F1-2_SOLEXA_FBgn0042650_rc; m=8/29; ncol2=15; w=-1; offset=-1; strand=R; shift=2; score=0.565092; --aaadTGTCACCmr ; cor=; Ncor= a 0 0 931 1344 1271 809 0 1 8 1 2464 461 468 825 814 c 0 0 555 328 179 229 8 0 4 2584 41 2085 2015 848 635 g 0 0 582 446 563 782 272 2584 139 0 78 0 61 346 692 t 0 0 515 467 571 764 2305 0 2434 0 1 40 38 564 444
CG11617_Cell_FBgn0031232_rc_shift6 (CG11617_Cell_FBgn0031232_rc)				; oligos_6nt_mkv4_m3 versus CG11617_Cell_FBgn0031232_rc; m=9/29; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.564713; ------TGTtAAAw- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 4 17 16 14 7 0 c 0 0 0 0 0 0 0 0 0 3 0 0 1 3 0 g 0 0 0 0 0 0 0 17 0 0 0 0 0 0 0 t 0 0 0 0 0 0 17 0 17 10 0 1 2 7 0
CG11617_SOLEXA_FBgn0031232_rc_shift6 (CG11617_SOLEXA_FBgn0031232_rc)				; oligos_6nt_mkv4_m3 versus CG11617_SOLEXA_FBgn0031232_rc; m=10/29; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.550904; ------TGTwAwaw- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 393 839 455 359 377 0 c 0 0 0 0 0 0 9 0 0 283 20 176 257 211 0 g 0 0 0 0 0 0 2 1152 0 0 167 176 262 201 0 t 0 0 0 0 0 0 1148 7 1159 483 133 352 281 370 0
Six4_SOLEXA_FBgn0027364_rc_shift6 (Six4_SOLEXA_FBgn0027364_rc)				; oligos_6nt_mkv4_m3 versus Six4_SOLEXA_FBgn0027364_rc; m=11/29; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.53967; ------TaTCAhww- ; cor=; Ncor= a 0 0 0 0 0 0 0 383 0 38 599 194 203 181 0 c 0 0 0 0 0 0 0 126 0 556 0 167 83 116 0 g 0 0 0 0 0 0 40 128 0 0 38 84 91 93 0 t 0 0 0 0 0 0 597 0 637 43 0 192 260 247 0
exd_SOLEXA_2_FBgn0000611_rc_shift5 (exd_SOLEXA_2_FBgn0000611_rc)				; oligos_6nt_mkv4_m3 versus exd_SOLEXA_2_FBgn0000611_rc; m=12/29; ncol2=8; w=0; offset=2; strand=R; shift=5; score=0.509125; -----wyrTCAaa-- ; cor=; Ncor= a 0 0 0 0 0 483 259 1228 0 0 2672 1314 1025 0 0 c 0 0 0 0 0 145 914 86 0 2672 0 598 458 0 0 g 0 0 0 0 0 91 14 1169 0 0 0 204 568 0 0 t 0 0 0 0 0 474 1470 189 2672 0 0 539 587 0 0
Fer3_da_SANGER_5_FBgn0037937_shift2 (Fer3_da_SANGER_5_FBgn0037937)				; oligos_6nt_mkv4_m3 versus Fer3_da_SANGER_5_FBgn0037937; m=13/29; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.499373; --CAbCTGTyaC--- ; cor=; Ncor= a 0 0 2 18 1 3 0 0 3 0 11 3 0 0 0 c 0 0 17 0 5 15 1 0 2 7 4 15 0 0 0 g 0 0 0 1 8 1 0 19 0 4 2 0 0 0 0 t 0 0 0 0 5 0 18 0 14 8 2 1 0 0 0
Fer3_da_SANGER_5_FBgn0000413_shift2 (Fer3_da_SANGER_5_FBgn0000413)				; oligos_6nt_mkv4_m3 versus Fer3_da_SANGER_5_FBgn0000413; m=14/29; ncol2=10; w=-1; offset=-1; strand=D; shift=2; score=0.499373; --CAbCTGTyaC--- ; cor=; Ncor= a 0 0 2 18 1 3 0 0 3 0 11 3 0 0 0 c 0 0 17 0 5 15 1 0 2 7 4 15 0 0 0 g 0 0 0 1 8 1 0 19 0 4 2 0 0 0 0 t 0 0 0 0 5 0 18 0 14 8 2 1 0 0 0
Vis_SOLEXA_FBgn0033748_rc_shift6 (Vis_SOLEXA_FBgn0033748_rc)				; oligos_6nt_mkv4_m3 versus Vis_SOLEXA_FBgn0033748_rc; m=15/29; ncol2=6; w=0; offset=3; strand=R; shift=6; score=0.496352; ------TGTCAa--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 13 354 199 0 0 0 c 0 0 0 0 0 0 36 0 0 341 0 34 0 0 0 g 0 0 0 0 0 0 0 354 0 0 0 53 0 0 0 t 0 0 0 0 0 0 318 0 354 0 0 68 0 0 0
Achi_SOLEXA_FBgn0033749_rc_shift6 (Achi_SOLEXA_FBgn0033749_rc)				; oligos_6nt_mkv4_m3 versus Achi_SOLEXA_FBgn0033749_rc; m=16/29; ncol2=6; w=0; offset=3; strand=R; shift=6; score=0.494328; ------TGTCAa--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 368 181 0 0 0 c 0 0 0 0 0 0 29 0 0 344 0 39 0 0 0 g 0 0 0 0 0 0 0 368 0 0 0 74 0 0 0 t 0 0 0 0 0 0 339 0 368 24 0 74 0 0 0
ems_FlyReg_FBgn0000576_rc_shift6 (ems_FlyReg_FBgn0000576_rc)				; oligos_6nt_mkv4_m3 versus ems_FlyReg_FBgn0000576_rc; m=17/29; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.490415; ------TsTmAThm- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 1 3 0 1 2 0 c 0 0 0 0 0 0 0 1 0 2 0 0 1 1 0 g 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 t 0 0 0 0 0 0 3 0 3 0 0 3 1 0 0
Hth_SOLEXA_FBgn0001235_rc_shift6 (Hth_SOLEXA_FBgn0001235_rc)				; oligos_6nt_mkv4_m3 versus Hth_SOLEXA_FBgn0001235_rc; m=18/29; ncol2=6; w=0; offset=3; strand=R; shift=6; score=0.480716; ------TGTCAm--- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 388 148 0 0 0 c 0 0 0 0 0 0 40 0 0 444 56 120 0 0 0 g 0 0 0 0 0 0 60 444 41 0 0 87 0 0 0 t 0 0 0 0 0 0 344 0 403 0 0 89 0 0 0
Caup_Cell_FBgn0015919_rc_shift6 (Caup_Cell_FBgn0015919_rc)				; oligos_6nt_mkv4_m3 versus Caup_Cell_FBgn0015919_rc; m=19/29; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.472683; ------TGTTawwg- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 3 12 7 7 4 0 c 0 0 0 0 0 0 0 0 0 2 2 4 3 2 0 g 0 0 0 0 0 0 0 19 0 0 1 0 0 9 0 t 0 0 0 0 0 0 19 0 19 14 4 8 9 4 0
So_SOLEXA_FBgn0003460_rc_shift6 (So_SOLEXA_FBgn0003460_rc)				; oligos_6nt_mkv4_m3 versus So_SOLEXA_FBgn0003460_rc; m=20/29; ncol2=8; w=0; offset=3; strand=R; shift=6; score=0.471011; ------TATCAyww- ; cor=; Ncor= a 0 0 0 0 0 0 0 509 0 0 467 122 165 166 0 c 0 0 0 0 0 0 0 14 0 519 4 151 117 95 0 g 0 0 0 0 0 0 0 8 0 0 58 87 92 102 0 t 0 0 0 0 0 0 531 0 531 12 2 171 157 168 0
HLHmgamma_SANGER_5_2_FBgn0002735_shift6 (HLHmgamma_SANGER_5_2_FBgn0002735)				; oligos_6nt_mkv4_m3 versus HLHmgamma_SANGER_5_2_FBgn0002735; m=21/29; ncol2=7; w=0; offset=3; strand=D; shift=6; score=0.466095; ------wGTCAAG-- ; cor=; Ncor= a 0 0 0 0 0 0 3 0 0 0 7 7 0 0 0 c 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0 g 0 0 0 0 0 0 0 7 0 0 0 0 7 0 0 t 0 0 0 0 0 0 4 0 7 0 0 0 0 0 0
tap_da_SANGER_5_2_FBgn0015550_shift1 (tap_da_SANGER_5_2_FBgn0015550)				; oligos_6nt_mkv4_m3 versus tap_da_SANGER_5_2_FBgn0015550; m=22/29; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.441631; -SCAkATGTCA---- ; cor=; Ncor= a 0 0 0 13 1 11 0 0 0 0 10 0 0 0 0 c 0 9 12 0 3 3 0 0 0 11 0 0 0 0 0 g 0 3 0 1 5 0 0 14 1 1 3 0 0 0 0 t 0 0 0 0 5 0 14 0 13 2 1 0 0 0 0
tap_da_SANGER_5_2_FBgn0000413_shift1 (tap_da_SANGER_5_2_FBgn0000413)				; oligos_6nt_mkv4_m3 versus tap_da_SANGER_5_2_FBgn0000413; m=23/29; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.441631; -SCAkATGTCA---- ; cor=; Ncor= a 0 0 0 13 1 11 0 0 0 0 10 0 0 0 0 c 0 9 12 0 3 3 0 0 0 11 0 0 0 0 0 g 0 3 0 1 5 0 0 14 1 1 3 0 0 0 0 t 0 0 0 0 5 0 14 0 13 2 1 0 0 0 0
Vis_Cell_FBgn0033748_rc_shift6 (Vis_Cell_FBgn0033748_rc)				; oligos_6nt_mkv4_m3 versus Vis_Cell_FBgn0033748_rc; m=24/29; ncol2=5; w=0; offset=3; strand=R; shift=6; score=0.416374; ------TGTCA---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 22 0 0 0 0 c 0 0 0 0 0 0 0 0 0 22 0 0 0 0 0 g 0 0 0 0 0 0 0 22 0 0 0 0 0 0 0 t 0 0 0 0 0 0 22 0 22 0 0 0 0 0 0
Hth_Cell_FBgn0001235_rc_shift6 (Hth_Cell_FBgn0001235_rc)				; oligos_6nt_mkv4_m3 versus Hth_Cell_FBgn0001235_rc; m=25/29; ncol2=5; w=0; offset=3; strand=R; shift=6; score=0.412766; ------TGTCA---- ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 0 17 0 0 0 0 c 0 0 0 0 0 0 3 0 0 17 0 0 0 0 0 g 0 0 0 0 0 0 0 17 0 0 0 0 0 0 0 t 0 0 0 0 0 0 14 0 17 0 0 0 0 0 0
Fer1_da_SANGER_10_FBgn0000413_shift0 (Fer1_da_SANGER_10_FBgn0000413)				; oligos_6nt_mkv4_m3 versus Fer1_da_SANGER_10_FBgn0000413; m=26/29; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.407324; mvCAsmTGwCa---- ; cor=; Ncor= a 11 11 0 23 0 6 0 0 8 0 14 0 0 0 0 c 6 6 23 0 15 14 0 0 3 17 4 0 0 0 0 g 1 6 0 0 8 3 0 23 2 3 4 0 0 0 0 t 5 0 0 0 0 0 23 0 10 3 1 0 0 0 0
Fer1_da_SANGER_10_FBgn0037475_shift0 (Fer1_da_SANGER_10_FBgn0037475)				; oligos_6nt_mkv4_m3 versus Fer1_da_SANGER_10_FBgn0037475; m=27/29; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.407324; mvCAsmTGwCa---- ; cor=; Ncor= a 11 11 0 23 0 6 0 0 8 0 14 0 0 0 0 c 6 6 23 0 15 14 0 0 3 17 4 0 0 0 0 g 1 6 0 0 8 3 0 23 2 3 4 0 0 0 0 t 5 0 0 0 0 0 23 0 10 3 1 0 0 0 0
nau_da_SANGER_5_FBgn0002922_shift2 (nau_da_SANGER_5_FBgn0002922)				; oligos_6nt_mkv4_m3 versus nau_da_SANGER_5_FBgn0002922; m=28/29; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.402198; --CACCTGyy----- ; cor=; Ncor= a 0 0 0 22 0 0 0 0 0 1 0 0 0 0 0 c 0 0 16 0 22 22 0 0 9 14 0 0 0 0 0 g 0 0 1 0 0 0 0 22 0 1 0 0 0 0 0 t 0 0 0 0 0 0 22 0 13 6 0 0 0 0 0
nau_da_SANGER_5_FBgn0000413_shift2 (nau_da_SANGER_5_FBgn0000413)				; oligos_6nt_mkv4_m3 versus nau_da_SANGER_5_FBgn0000413; m=29/29; ncol2=8; w=-1; offset=-1; strand=D; shift=2; score=0.402198; --CACCTGyy----- ; cor=; Ncor= a 0 0 0 22 0 0 0 0 0 1 0 0 0 0 0 c 0 0 16 0 22 22 0 0 9 14 0 0 0 0 0 g 0 0 1 0 0 0 0 22 0 1 0 0 0 0 0 t 0 0 0 0 0 0 22 0 13 6 0 0 0 0 0